Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv22143 Davidia involucrata HOM05D005117 ORTHO05D005956 0.0e+00 1199.9 612 100.0
CSS0010464 Camellia sinensis var. sinensis HOM05D005117 ORTHO05D005956 2.8e-298 1028.1 612 84.6
Rhsim12G0002100 Rhododendron simsii HOM05D005117 ORTHO05D005956 7.9e-285 983.4 689 74.3
Actinidia23299 Actinidia chinensis HOM05D005117 ORTHO05D005956 1.7e-284 982.2 612 80.4
GSVIVG01037192001 Vitis vinifera HOM05D005117 ORTHO05D005956 9.9e-280 966.5 614 79.8
TWI12G0486 Tripterygium wilfordii HOM05D005117 ORTHO05D005956 1.9e-275 952.2 614 78.0
Hma1.2p1_0016F.1_g010920 Hydrangea macrophylla HOM05D005117 ORTHO05D005956 3.4e-272 941.4 610 79.2
Lj9A696G55 Lonicera japonica HOM05D005117 ORTHO05D005956 8.4e-271 936.8 628 77.5
QL09p001419 Quercus lobata HOM05D005117 ORTHO05D005956 1.9e-270 935.6 621 77.1
CiPaw.03G013100 Carya illinoinensis HOM05D005117 ORTHO05D005956 3.9e-268 927.9 616 77.1
Cpa.g.sc142.12 Carica papaya HOM05D005117 ORTHO05D005956 7.4e-267 923.7 614 76.1
Potri.013G096600 Populus trichocarpa HOM05D005117 ORTHO05D005956 2.1e-266 922.2 616 75.5
RcHm_v2.0_Chr6g0250391 Rosa chinensis HOM05D005117 ORTHO05D005956 2.9e-263 911.8 613 75.2
MD10G1002600 Malus domestica HOM05D005117 ORTHO05D005956 5.0e-263 911.0 614 75.7
Ciclev10019359m.g Citrus clementina HOM05D005117 ORTHO05D005956 6.5e-263 910.6 614 76.1
ClCG11G008340 Citrullus lanatus HOM05D005117 ORTHO05D005956 5.5e-262 907.5 619 75.6
Cc10_g16050 Coffea canephora HOM05D005117 ORTHO05D005956 7.2e-262 907.1 613 73.7
FAN20G0498 Fragaria x ananassa HOM05D005117 ORTHO05D005956 2.1e-261 905.6 617 74.9
Manes.18G111600 Manihot esculenta HOM05D005117 ORTHO05D005956 6.1e-261 904.0 614 74.3
Thecc.08G180900 Theobroma cacao HOM05D005117 ORTHO05D005956 6.1e-261 904.0 614 75.1
Phvul.011G215800 Phaseolus vulgaris HOM05D005117 ORTHO05D005956 6.7e-260 900.6 614 74.6
Ca_13614_v3 Cicer arietinum L. HOM05D005117 ORTHO05D005956 8.7e-260 900.2 615 74.8
arahy.Tifrunner.gnm1.ann1.T5KNPK Arachis hypogaea HOM05D005117 ORTHO05D005956 1.9e-259 899.0 624 73.6
COL.COLO4_25130 Corchorus olitorius HOM05D005117 ORTHO05D005956 1.9e-259 899.0 614 74.1
VMungo1127G0019 Vigna mungo HOM05D005117 ORTHO05D005956 1.9e-259 899.0 612 74.5
FvH4_2g00430 Fragaria vesca HOM05D005117 ORTHO05D005956 3.3e-259 898.3 617 74.4
TPR.G34118 Trifolium pratense HOM05D005117 ORTHO05D005956 4.8e-258 894.4 617 74.7
MBI06_g32153_MAGBIO Magnolia biondii HOM05D005117 ORTHO05D005956 6.3e-258 894.0 617 73.6
Gohir.A08G230500 Gossypium hirsutum HOM05D005117 ORTHO05D005956 1.1e-257 893.3 615 74.8
Gohir.D08G250900 Gossypium hirsutum HOM05D005117 ORTHO05D005956 1.1e-257 893.3 615 74.8
Gorai.004G267600 Gossypium raimondii HOM05D005117 ORTHO05D005956 1.1e-257 893.3 615 74.8
MSTRG.25503 Avicennia marina HOM05D005117 ORTHO05D005956 1.4e-257 892.9 613 74.7
CsaV3_2G033280 Cucumis sativus L. HOM05D005117 ORTHO05D005956 1.8e-257 892.5 619 74.3
Sopen11g020570 Solanum pennellii HOM05D005117 ORTHO05D005956 4.1e-257 891.3 612 73.5
Sed0010084 Sechium edule HOM05D005117 ORTHO05D005956 5.3e-257 891.0 616 72.9
Psat7g227480 Pisum sativum HOM05D005117 ORTHO05D005956 2.6e-256 888.6 615 73.3
Solyc11g045120.3 Solanum lycopersicum HOM05D005117 ORTHO05D005956 4.5e-256 887.9 612 73.4
Lalb_Chr03g0033811 Lupinus albus HOM05D005117 ORTHO05D005956 1.7e-255 885.9 614 73.9
Medtr4g030200 Medicago truncatula HOM05D005117 ORTHO05D005956 6.5e-255 884.0 618 73.3
Lj3g0005068 Lotus japonicus HOM05D005117 ORTHO05D005956 8.5e-255 883.6 614 72.0
arahy.Tifrunner.gnm1.ann1.H62643 Arachis hypogaea HOM05D005117 ORTHO05D005956 2.1e-253 879.0 614 73.5
CANSAT21G1171 Cannabis sativa HOM05D005117 ORTHO05D005956 4.6e-253 877.9 615 72.8
PGSC0003DMG401019061 Solanum tuberosum HOM05D005117 ORTHO05D005956 7.9e-253 877.1 612 72.4
Nitab4.5_0001489g0010 Nicotiana tabacum HOM05D005117 ORTHO05D005956 6.7e-252 874.0 612 71.6
Nitab4.5_0000009g0430 Nicotiana tabacum HOM05D005117 ORTHO05D005956 2.5e-251 872.1 613 72.1
PSO170G3068 Papaver somniferum HOM05D005117 ORTHO05D005956 7.4e-251 870.5 614 71.5
Aqoxy5G01861 Aquilegia oxysepala HOM05D005117 ORTHO05D005956 1.1e-249 866.7 616 71.4
SalBow7G0613 Salvia bowleyana HOM05D005117 ORTHO05D005956 1.4e-249 866.3 595 73.4
EL10Ac1g01281 Beta vulgaris HOM05D005117 ORTHO05D005956 3.1e-249 865.1 612 70.8
PSO017G2614 Papaver somniferum HOM05D005117 ORTHO05D005956 3.1e-249 865.1 614 71.3
Migut.C01395 Erythranthe guttata HOM05D005117 ORTHO05D005956 2.2e-247 859.0 612 71.4
Sc06g0000080 Simmondsia chinensis HOM05D005117 ORTHO05D005956 1.4e-246 856.3 612 70.6
CAN.G75.10 Capsicum annuum HOM05D005117 ORTHO05D005956 5.5e-246 854.4 612 70.9
Sabra13G0082800 Salix brachista HOM05D005117 ORTHO05D005956 2.1e-245 852.4 745 61.9
PGR004G2811 Punica granatum HOM05D005117 ORTHO05D005956 1.4e-244 849.7 618 70.1
THA.LOC104810302 Tarenaya hassleriana HOM05D005117 ORTHO05D005956 1.8e-244 849.4 614 69.7
HanXRQChr12g0369271 Helianthus annuus HOM05D005117 ORTHO05D005956 1.3e-242 843.2 613 71.3
Hund26940 Selenicereus undatus HOM05D005117 ORTHO05D005956 2.4e-241 839.0 604 70.5
Glyma.09G001900 Glycine max HOM05D005117 ORTHO05D005956 1.2e-240 836.6 570 74.2
ECA247G0677 Erigeron canadensis HOM05D005117 ORTHO05D005956 3.8e-239 831.6 612 70.3
Peaxi162Scf00078g01021 Petunia axillaris HOM05D005117 ORTHO05D005956 7.2e-238 827.4 607 70.5
Aa31LG4G9190 Aethionema arabicum HOM05D005117 ORTHO05D005956 1.2e-237 826.6 612 68.1
ATR1089G036 Amborella trichopoda HOM05D005117 ORTHO05D005956 1.6e-237 826.2 606 69.5
Thhalv10018306m.g Eutrema salsugineum HOM05D005117 ORTHO05D005956 3.0e-236 822.0 612 66.8
Sp5g26520 Schrenkiella parvula HOM05D005117 ORTHO05D005956 3.0e-236 822.0 612 66.5
Eucgr.A01322 Eucalyptus grandis HOM05D005117 ORTHO05D005956 6.7e-236 820.8 565 71.9
Duzib093G1290 Durio zibethinus HOM05D005117 ORTHO05D005956 2.0e-235 819.3 575 74.1
Carub.0002s1821 Capsella rubella HOM05D005117 ORTHO05D005956 3.3e-235 818.5 613 66.6
Os02g0557600 Oryza sativa ssp. japonica HOM05D005117 ORTHO05D005956 1.1e-233 813.5 614 67.9
C06p45410 Brassica napus HOM05D005117 ORTHO05D005956 1.4e-233 813.1 613 66.1
AL2G31010 Arabidopsis lyrata HOM05D005117 ORTHO05D005956 1.8e-233 812.8 613 66.4
BcaC08g46567 Brassica carinata HOM05D005117 ORTHO05D005956 4.1e-233 811.6 613 65.9
CARHR064630 Cardamine hirsuta HOM05D005117 ORTHO05D005956 7.0e-233 810.8 613 65.4
BolC6t39599H Brassica oleracea HOM05D005117 ORTHO05D005956 9.1e-233 810.4 613 65.9
BraA07t31328Z Brassica rapa HOM05D005117 ORTHO05D005956 9.1e-233 810.4 613 65.9
DCAR_003506 Daucus carota HOM05D005117 ORTHO05D005956 9.1e-233 810.4 567 74.1
A07p37640 Brassica napus HOM05D005117 ORTHO05D005956 4.5e-232 808.1 614 66.0
Lsat_1_v5_gn_1_24520 Lactuca sativa HOM05D005117 ORTHO05D005956 2.2e-231 805.8 597 69.8
Ah.05g170440 Amaranthus hybridus HOM05D005117 ORTHO05D005956 2.9e-231 805.4 612 68.3
AT1G71350 Arabidopsis thaliana HOM05D005117 ORTHO05D005956 1.1e-230 803.5 613 66.4
BcaB03g14892 Brassica carinata HOM05D005117 ORTHO05D005956 1.2e-229 800.0 613 65.6
Glyma.12G241600 Glycine max HOM05D005117 ORTHO05D005956 8.0e-229 797.3 547 74.4
HPP92_019134 Vanilla planifolia HOM05D005117 ORTHO05D005956 3.4e-227 792.0 620 65.8
MELO3C008099.2 Cucumis melo HOM05D005117 ORTHO05D005956 5.7e-227 791.2 551 73.9
HPP92_019136 Vanilla planifolia HOM05D005117 ORTHO05D005956 1.4e-225 786.6 619 65.3
Zm00001eb243900 Zea mays HOM05D005117 ORTHO05D005956 1.7e-218 763.1 614 65.0
vmacro00946 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 5.9e-208 728.0 685 60.4
Aqoxy5G01859 Aquilegia oxysepala HOM05D005117 ORTHO05D005956 3.6e-205 718.8 621 62.6
Prupe.8G004200 Prunus persica HOM05D005117 ORTHO05D005956 1.8e-204 716.5 501 74.3
CDE05G1166 Ceratophyllum demersum HOM05D005117 ORTHO05D005956 2.3e-204 716.1 614 62.5
SMO364G0365 Selaginella moellendorffii HOM05D005117 ORTHO05D005956 7.5e-195 684.5 627 57.4
unitig_37.g13073 Utricularia gibba HOM05D005117 ORTHO05D005956 1.2e-189 667.2 612 59.0
vmacro00947 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 1.5e-187 660.2 491 70.7
CBR_g6708 Chara braunii HOM05D005117 ORTHO05D005956 2.1e-173 613.2 677 49.3
SEGI_03298 Sequoiadendron giganteum HOM05D005117 ORTHO05D005956 4.9e-170 602.1 616 55.2
Hma1.2p1_0016F.1_g010930 Hydrangea macrophylla HOM05D005117 ORTHO05D005956 1.8e-164 583.6 358 82.4
Atru.chr13.2570 Acer truncatum HOM05D005117 ORTHO05D005956 1.1e-156 557.8 387 73.4
RcHm_v2.0_Chr6g0249701 Rosa chinensis HOM05D005117 ORTHO05D005956 2.1e-152 543.5 384 71.6
AagrBONN_evm.TU.Sc2ySwM_340.48 Anthoceros agrestis HOM05D005117 ORTHO05D005956 5.7e-150 535.4 504 54.8
TAR381G0825 Trochodendron aralioides HOM05D005117 ORTHO05D005956 7.4e-150 535.0 360 75.3
Haze_13981 Corylus avellana HOM05D005117 ORTHO05D005956 4.5e-139 499.2 360 71.7
SHI04053 Sapria himalayana HOM05D005117 ORTHO05D005956 1.1e-124 451.4 439 57.2
RcHm_v2.0_Chr6g0250211 Rosa chinensis HOM05D005117 ORTHO05D005956 3.3e-118 429.9 391 61.4
SGA_v2.0_scaffold443G51687 Striga asiatica HOM05D005117 ORTHO05D005956 7.5e-118 428.7 321 69.5
Ca_30189_v3 Cicer arietinum L. HOM05D005117 ORTHO05D005956 1.1e-113 414.8 259 79.9
vmacro00948 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 1.6e-112 411.0 259 79.9
Haze_13982 Corylus avellana HOM05D005117 ORTHO05D005956 2.3e-111 407.1 257 80.9
Cre06.g303650 Chlamydomonas reinhardtii HOM05D005117 ORTHO05D005956 1.8e-103 380.9 650 37.7
Atru.chr13.2543 Acer truncatum HOM05D005117 ORTHO05D005956 1.8e-100 370.9 243 76.5
PGSC0003DMG402019061 Solanum tuberosum HOM05D005117 ORTHO05D005956 3.4e-94 350.1 231 76.6
MCO13G430 Micromonas commoda HOM05D005117 ORTHO05D005956 2.5e-81 307.4 637 34.5
Atru.chr13.2569 Acer truncatum HOM05D005117 ORTHO05D005956 2.3e-79 300.8 179 81.0
RcHm_v2.0_Chr6g0249901 Rosa chinensis HOM05D005117 ORTHO05D005956 3.3e-73 280.4 222 64.9
RcHm_v2.0_Chr6g0250191 Rosa chinensis HOM05D005117 ORTHO05D005956 1.6e-67 261.5 216 63.0
PSO541G0924 Papaver somniferum HOM05D005117 ORTHO05D005956 6.2e-56 223.0 169 69.8
Zm00001eb084470 Zea mays HOM05D005117 ORTHO05D005956 3.0e-50 204.1 157 66.9
RcHm_v2.0_Chr6g0250151 Rosa chinensis HOM05D005117 ORTHO05D005956 6.9e-47 193.0 109 85.3
FAN24G1044 Fragaria x ananassa HOM05D005117 ORTHO05D005956 4.9e-45 186.8 111 82.9
RcHm_v2.0_Chr6g0249891 Rosa chinensis HOM05D005117 ORTHO05D005956 1.1e-44 185.7 111 83.8
RcHm_v2.0_Chr6g0250001 Rosa chinensis HOM05D005117 ORTHO05D005956 3.5e-43 180.6 109 79.8
RcHm_v2.0_Chr6g0250171 Rosa chinensis HOM05D005117 ORTHO05D005956 7.9e-43 179.5 111 80.2
RcHm_v2.0_Chr6g0249861 Rosa chinensis HOM05D005117 ORTHO05D005956 6.7e-42 176.4 127 72.4
AUR62038541 Chenopodium quinoa HOM05D005117 ORTHO05D005956 1.1e-41 175.6 110 76.4
RcHm_v2.0_Chr6g0249251 Rosa chinensis HOM05D005117 ORTHO05D005956 9.3e-36 156.0 129 59.7
SHI04054 Sapria himalayana HOM05D005117 ORTHO05D005956 7.9e-35 152.9 138 58.7
RcHm_v2.0_Chr6g0250321 Rosa chinensis HOM05D005117 ORTHO05D005956 8.7e-34 149.4 100 75.0
RcHm_v2.0_Chr6g0249991 Rosa chinensis HOM05D005117 ORTHO05D005956 6.9e-31 139.8 129 56.6
FAN27G2074 Fragaria x ananassa HOM05D005117 ORTHO05D005956 2.2e-29 134.8 82 79.3
RcHm_v2.0_Chr6g0249761 Rosa chinensis HOM05D005117 ORTHO05D005956 1.4e-28 132.1 83 75.9
Rhsim03G0007800 Rhododendron simsii HOM05D000003 ORTHO05D005956 2.5e-28 131.3 134 56.7
Cfa026610 Carpinus fangiana HOM05D005117 ORTHO05D005956 8.8e-26 122.9 513 26.3
RcHm_v2.0_Chr6g0249981 Rosa chinensis HOM05D005117 ORTHO05D005956 9.7e-25 119.4 69 85.5
A06p32710 Brassica napus HOM05D005117 ORTHO05D005956 2.4e-23 114.8 81 66.7
BraA06t26200Z Brassica rapa HOM05D005117 ORTHO05D005956 2.4e-23 114.8 81 66.7
RcHm_v2.0_Chr6g0249911 Rosa chinensis HOM05D005117 ORTHO05D005956 3.4e-22 110.9 72 72.2
AagrBONN_evm.TU.Sc2ySwM_340.40 Anthoceros agrestis HOM05D005117 ORTHO05D005956 7.7e-22 109.8 83 62.7
RcHm_v2.0_Chr6g0250221 Rosa chinensis HOM05D005117 ORTHO05D005956 1.1e-20 105.9 66 77.3
CDE05G1587 Ceratophyllum demersum HOM05D005117 ORTHO05D005956 6.7e-18 96.7 146 43.8
RcHm_v2.0_Chr6g0249871 Rosa chinensis HOM05D005117 ORTHO05D005956 2.0e-17 95.1 55 74.5
RcHm_v2.0_Chr6g0249791 Rosa chinensis HOM05D005117 ORTHO05D005956 1.2e-14 85.9 55 78.2
Rhsim09G0011400 Rhododendron simsii HOM05D005117 ORTHO05D005956 9.4e-12 76.3 51 74.5
Hund07108 Selenicereus undatus HOM05D005943 ORTHO05D007328 9.4e-12 76.3 176 27.8
AagrBONN_evm.TU.Sc2ySwM_228.5507 Anthoceros agrestis HOM05D005943 ORTHO05D007328 4.7e-11 73.9 185 28.1
Cc10_g13530 Coffea canephora HOM05D005117 ORTHO05D005956 1.8e-10 72.0 41 82.9
RcHm_v2.0_Chr6g0249241 Rosa chinensis HOM05D005117 ORTHO05D005956 2.3e-10 71.6 40 80.0
RcHm_v2.0_Chr6g0249851 Rosa chinensis HOM05D005117 ORTHO05D005956 3.0e-10 71.2 41 75.6
SMO169G0068 Selaginella moellendorffii HOM05D005943 ORTHO05D007328 4.4e-09 67.4 183 27.9
SHI04055 Sapria himalayana HOM05D005117 ORTHO05D005956 9.7e-09 66.2 46 73.9
SHI49642 Sapria himalayana HOM05D005117 ORTHO05D005956 8.2e-08 63.2 41 68.3
SEGI_33948 Sequoiadendron giganteum HOM05D005117 ORTHO05D005956 1.1e-07 62.8 45 71.1
RcHm_v2.0_Chr6g0249261 Rosa chinensis HOM05D005117 ORTHO05D005956 3.1e-07 61.2 46 65.2


User provided reference genes

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