Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv22036 Davidia involucrata HOM05D006097 ORTHO05D008538 0.0e+00 1152.1 576 100.0
Actinidia21518 Actinidia chinensis HOM05D006097 ORTHO05D008538 3.7e-268 927.9 577 79.2
GSVIVG01013488001 Vitis vinifera HOM05D006097 ORTHO05D008538 3.8e-265 917.9 579 78.4
QL04p017855 Quercus lobata HOM05D006097 ORTHO05D008538 1.2e-263 912.9 588 76.0
COL.COLO4_20657 Corchorus olitorius HOM05D006097 ORTHO05D008538 4.2e-256 887.9 578 73.9
Haze_03039 Corylus avellana HOM05D006097 ORTHO05D008538 5.5e-256 887.5 575 75.5
CiPaw.14G007600 Carya illinoinensis HOM05D006097 ORTHO05D008538 7.2e-256 887.1 542 78.0
Gohir.A06G175000 Gossypium hirsutum HOM05D006097 ORTHO05D008538 3.1e-251 871.7 578 73.0
Thecc.10G154600 Theobroma cacao HOM05D006097 ORTHO05D008538 3.1e-251 871.7 578 72.8
Gohir.D06G184900 Gossypium hirsutum HOM05D006097 ORTHO05D008538 4.1e-251 871.3 578 73.5
Gorai.010G216200 Gossypium raimondii HOM05D006097 ORTHO05D008538 7.0e-251 870.5 580 73.4
Cfa010917 Carpinus fangiana HOM05D006097 ORTHO05D008538 1.0e-249 866.7 606 71.8
Prupe.2G036100 Prunus persica HOM05D006097 ORTHO05D008538 3.8e-249 864.8 576 73.4
Duzib114G0946 Durio zibethinus HOM05D006097 ORTHO05D008538 3.2e-248 861.7 578 72.5
Migut.N01845 Erythranthe guttata HOM05D006097 ORTHO05D008538 4.2e-248 861.3 575 73.7
CSS0004732 Camellia sinensis var. sinensis HOM05D006097 ORTHO05D008538 2.7e-247 858.6 576 75.3
Cc02_g30220 Coffea canephora HOM05D006097 ORTHO05D008538 2.7e-247 858.6 583 72.7
SGA_v2.0_scaffold232G43504 Striga asiatica HOM05D006097 ORTHO05D008538 8.0e-247 857.1 576 72.7
Sopen08g005450 Solanum pennellii HOM05D006097 ORTHO05D008538 1.0e-246 856.7 575 72.9
Nitab4.5_0001621g0010 Nicotiana tabacum HOM05D006097 ORTHO05D008538 1.8e-246 855.9 573 74.3
Ciclev10004623m.g Citrus clementina HOM05D006097 ORTHO05D008538 5.2e-246 854.4 580 72.2
Peaxi162Scf00767g00518 Petunia axillaris HOM05D006097 ORTHO05D008538 5.2e-246 854.4 540 75.9
MD07G1040200 Malus domestica HOM05D006097 ORTHO05D008538 6.8e-246 854.0 576 72.6
Nn2g14836 Nelumbo nucifera HOM05D006097 ORTHO05D008538 3.4e-245 851.7 576 72.2
Manes.04G159300 Manihot esculenta HOM05D006097 ORTHO05D008538 1.7e-244 849.4 584 72.6
HanXRQChr04g0113861 Helianthus annuus HOM05D006097 ORTHO05D008538 2.2e-244 849.0 587 71.7
Atru.chr7.628 Acer truncatum HOM05D006097 ORTHO05D008538 2.4e-243 845.5 577 72.4
Lsat_1_v5_gn_7_31901 Lactuca sativa HOM05D006097 ORTHO05D004880 2.4e-243 845.5 555 73.3
CAN.G176.2 Capsicum annuum HOM05D006097 ORTHO05D008538 4.1e-243 844.7 578 71.8
Potri.003G196300 Populus trichocarpa HOM05D006097 ORTHO05D008538 9.1e-243 843.6 577 72.1
ECA236G3136 Erigeron canadensis HOM05D006097 ORTHO05D008538 5.9e-242 840.9 538 73.2
THA.LOC104826726 Tarenaya hassleriana HOM05D006097 ORTHO05D008538 1.7e-241 839.3 577 70.9
SalBow6G4726 Salvia bowleyana HOM05D006097 ORTHO05D008538 2.9e-241 838.6 602 69.3
FAN01G0546 Fragaria x ananassa HOM05D006097 ORTHO05D008538 5.0e-241 837.8 566 71.9
PSO339G1331 Papaver somniferum HOM05D006097 ORTHO05D008538 6.6e-241 837.4 575 69.9
RcHm_v2.0_Chr1g0324291 Rosa chinensis HOM05D006097 ORTHO05D008538 4.2e-240 834.7 569 72.4
Hund13358 Selenicereus undatus HOM05D006097 ORTHO05D008538 4.0e-238 828.2 575 71.0
Lj3g0013868 Lotus japonicus HOM05D006097 ORTHO05D008538 1.2e-237 826.6 574 70.0
PGR031G1965 Punica granatum HOM05D006097 ORTHO05D008538 5.7e-237 824.3 579 69.6
BraA04t16135Z Brassica rapa HOM05D006097 ORTHO05D008538 1.1e-235 820.1 577 69.5
FvH4_7g03070 Fragaria vesca HOM05D006097 ORTHO05D008538 1.8e-235 819.3 532 73.5
Sabra03G0146400 Salix brachista HOM05D006097 ORTHO05D008538 1.6e-234 816.2 619 66.2
C04p36530 Brassica napus HOM05D006097 ORTHO05D008538 2.0e-234 815.8 577 69.5
Glyma.13G197200 Glycine max HOM05D006097 ORTHO05D008538 2.0e-234 815.8 572 69.6
Sp5g06630 Schrenkiella parvula HOM05D006097 ORTHO05D008538 3.5e-234 815.1 577 69.2
Thhalv10010237m.g Eutrema salsugineum HOM05D006097 ORTHO05D008538 4.5e-234 814.7 577 69.5
TPR.G17806 Trifolium pratense HOM05D006097 ORTHO05D008538 4.5e-234 814.7 581 69.0
BcaC02g09793 Brassica carinata HOM05D006097 ORTHO05D008538 2.9e-233 812.0 577 69.2
Medtr3g014750 Medicago truncatula HOM05D006097 ORTHO05D008538 6.6e-233 810.8 580 69.3
A04p04190 Brassica napus HOM05D006097 ORTHO05D008538 1.1e-232 810.1 577 68.8
CANSAT56G2143 Cannabis sativa HOM05D006097 ORTHO05D008538 1.9e-232 809.3 568 68.3
BcaB02g08396 Brassica carinata HOM05D006097 ORTHO05D008538 5.6e-232 807.7 577 68.6
BolC4t25143H Brassica oleracea HOM05D006097 ORTHO05D008538 4.7e-231 804.7 595 67.4
CsaV3_5G036770 Cucumis sativus L. HOM05D006097 ORTHO05D008538 1.8e-230 802.7 542 70.7
Ah.12g062830 Amaranthus hybridus HOM05D006097 ORTHO05D008538 8.9e-230 800.4 574 67.6
Psat5g221440 Pisum sativum HOM05D006097 ORTHO05D008538 1.2e-229 800.0 577 67.6
AL5G37140 Arabidopsis lyrata HOM05D006097 ORTHO05D008538 2.0e-229 799.3 577 68.5
Lalb_Chr19g0132421 Lupinus albus HOM05D006097 ORTHO05D008538 2.2e-228 795.8 573 68.2
Carub.0005s2263 Capsella rubella HOM05D006097 ORTHO05D008538 3.7e-228 795.0 577 67.6
Hma1.2p1_1627F.1_g294440 Hydrangea macrophylla HOM05D006097 ORTHO05D008538 2.4e-227 792.3 463 83.2
Aqoxy2G00367 Aquilegia oxysepala HOM05D006097 ORTHO05D008538 3.0e-225 785.4 514 73.2
ATR0745G019 Amborella trichopoda HOM05D006097 ORTHO05D008538 3.9e-225 785.0 572 66.8
AUR62032650 Chenopodium quinoa HOM05D006097 ORTHO05D008538 3.9e-225 785.0 570 66.8
Aa31LG10G10820 Aethionema arabicum HOM05D006097 ORTHO05D008538 9.5e-224 780.4 583 65.9
arahy.Tifrunner.gnm1.ann1.HF4B4K Arachis hypogaea HOM05D006097 ORTHO05D008538 2.1e-223 779.2 626 62.0
AUR62026861 Chenopodium quinoa HOM05D006097 ORTHO05D008538 5.1e-217 758.1 565 65.5
Eucgr.G03235 Eucalyptus grandis HOM05D006097 ORTHO05D008538 5.1e-217 758.1 581 65.1
ClCG05G026810 Citrullus lanatus HOM05D006097 ORTHO05D008538 2.5e-216 755.7 563 65.9
EL10Ac2g02801 Beta vulgaris HOM05D006097 ORTHO05D008538 3.3e-216 755.4 656 59.1
CARHR165960 Cardamine hirsuta HOM05D006097 ORTHO05D008538 2.1e-215 752.7 570 65.3
PGSC0003DMG400025223 Solanum tuberosum HOM05D006097 ORTHO05D008538 1.6e-207 726.5 460 75.0
Solyc08g014470.4 Solanum lycopersicum HOM05D006097 ORTHO05D008538 5.8e-205 718.0 460 73.9
HPP92_013975 Vanilla planifolia HOM05D006097 ORTHO05D008538 4.9e-204 714.9 574 61.0
Os01g0952700 Oryza sativa ssp. japonica HOM05D006097 ORTHO05D008538 1.9e-203 713.0 537 62.2
Phvul.011G206500 Phaseolus vulgaris HOM05D006097 ORTHO05D008538 1.6e-202 709.9 480 70.4
Hma1.2p1_1627F.1_g294450 Hydrangea macrophylla HOM05D006097 ORTHO05D008538 7.8e-202 707.6 463 76.2
DCAR_031244 Daucus carota HOM05D006097 ORTHO05D008538 6.6e-201 704.5 460 72.8
Sc07g0002170 Simmondsia chinensis HOM05D006097 ORTHO05D008538 4.4e-197 691.8 462 71.2
Rhsim01G0124100 Rhododendron simsii HOM05D005112 ORTHO05D006681 7.6e-197 691.0 542 66.6
SEGI_19069 Sequoiadendron giganteum HOM05D006097 ORTHO05D008538 4.2e-195 685.3 536 61.2
arahy.Tifrunner.gnm1.ann1.RMFD7W Arachis hypogaea HOM05D006097 ORTHO05D008538 1.7e-193 679.9 603 57.9
MELO3C012474.2 Cucumis melo HOM05D006097 ORTHO05D008538 1.2e-181 640.6 431 70.8
MBI19_g07612_MAGBIO Magnolia biondii HOM05D006097 ORTHO05D008538 1.2e-178 630.6 533 60.6
QL04p017846 Quercus lobata HOM05D006097 ORTHO05D008538 2.7e-178 629.4 401 75.3
AT3G55850 Arabidopsis thaliana HOM05D006097 ORTHO05D008538 2.3e-177 626.3 462 67.1
unitig_52.g17390 Utricularia gibba HOM05D006097 ORTHO05D008538 1.1e-174 617.5 511 62.4
Sed0002543 Sechium edule HOM05D006097 ORTHO05D008538 2.3e-169 599.7 584 54.3
TAR623G0406 Trochodendron aralioides HOM05D006097 ORTHO05D008538 1.9e-163 580.1 351 79.2
SMO367G1089 Selaginella moellendorffii HOM05D006097 ORTHO05D008538 5.7e-160 568.5 566 50.5
Mapoly0021s0162 Marchantia polymorpha HOM05D006097 ORTHO05D008538 9.1e-158 561.2 541 50.8
Oeu048573.1 Olea europaea HOM05D006097 ORTHO05D008538 2.0e-152 543.5 357 73.9
AagrBONN_evm.TU.Sc2ySwM_340.253 Anthoceros agrestis HOM05D006097 ORTHO05D008538 4.8e-151 538.9 576 48.3
AUR62037188 Chenopodium quinoa HOM05D006097 ORTHO05D008538 5.5e-147 525.4 395 64.6
Pp3c20_1490 Physcomitrium patens HOM05D006097 ORTHO05D008538 8.0e-146 521.5 543 49.0
Glyma.15G235400 Glycine max HOM05D006097 ORTHO05D008538 6.7e-145 518.5 514 53.5
CDE06G1230 Ceratophyllum demersum HOM05D006097 ORTHO05D008538 2.8e-127 459.9 354 61.6
FAN06G0154 Fragaria x ananassa HOM05D005112 ORTHO05D006681 1.0e-124 451.4 539 47.3
Ca_26912_v3 Cicer arietinum L. HOM05D006097 ORTHO05D008538 8.6e-124 448.4 296 70.3
vmacro12697 Vaccinium macrocarpon HOM05D006097 ORTHO05D008538 5.7e-120 435.6 267 78.7
Thhalv10010899m.g Eutrema salsugineum HOM05D006097 ORTHO05D008538 8.6e-116 421.8 310 66.8
VMungo1127G1698 Vigna mungo HOM05D006097 ORTHO05D008538 2.6e-112 410.2 270 72.6
Lj9A654G51 Lonicera japonica HOM05D006097 ORTHO05D008538 4.4e-112 409.5 239 81.2
FAN10G0529 Fragaria x ananassa HOM05D006097 ORTHO05D008538 6.2e-106 389.0 692 38.0
SMO367G0062 Selaginella moellendorffii HOM05D006097 ORTHO05D005621 4.4e-96 356.3 542 41.0
MCO06G284 Micromonas commoda HOM05D006097 ORTHO05D008538 2.6e-88 330.5 567 38.1
Zm00001eb140700 Zea mays HOM05D006097 ORTHO05D008538 9.9e-88 328.6 249 63.5
TAR623G0702 Trochodendron aralioides HOM05D006097 ORTHO05D008538 6.0e-77 292.7 201 72.6
Cre06.g279350 Chlamydomonas reinhardtii HOM05D006097 ORTHO05D008538 4.8e-74 283.1 450 37.6
SMO343G0029 Selaginella moellendorffii HOM05D004978 ORTHO05D005621 1.9e-70 271.2 502 37.1
VMungo1127G1548 Vigna mungo HOM05D006097 ORTHO05D008538 2.4e-70 270.8 176 70.5
Lj9A654T55 Lonicera japonica HOM05D006097 ORTHO05D008538 2.1e-61 241.1 141 79.4
Cre07.g313350 Chlamydomonas reinhardtii HOM05D006097 ORTHO05D008538 7.2e-54 216.1 593 28.5
QL04p017840 Quercus lobata HOM05D006097 ORTHO05D008538 1.3e-52 211.8 124 78.2
Pp3s32_630 Physcomitrium patens HOM05D006097 ORTHO05D008538 3.7e-50 203.8 519 29.3
PRCOL_00006109 Prasinoderma coloniale HOM05D006097 ORTHO05D008538 6.9e-49 199.5 415 34.5
CDE06G0927 Ceratophyllum demersum HOM05D006097 ORTHO05D020391 1.9e-30 138.3 133 54.1
Ca_03883_v3 Cicer arietinum L. HOM05D006097 ORTHO05D008538 1.6e-29 135.2 97 63.9
Nn2g16009 Nelumbo nucifera HOM05D006097 ORTHO05D008538 1.4e-28 132.1 90 66.7
DCAR_031243 Daucus carota HOM05D006097 ORTHO05D020391 3.0e-28 131.0 116 63.8
Medtr1224s0010 Medicago truncatula HOM05D006097 ORTHO05D008538 9.1e-25 119.4 571 25.2
CDE06G2151 Ceratophyllum demersum HOM05D006097 ORTHO05D008538 3.2e-22 110.9 82 63.4
SEGI_33421 Sequoiadendron giganteum HOM05D006097 ORTHO05D020391 7.5e-19 99.8 74 64.9
SMO197G0087 Selaginella moellendorffii HOM05D003320 ORTHO05D003941 2.2e-18 98.2 139 40.3
Carub.0002s2671 Capsella rubella HOM05D006097 ORTHO05D008538 3.7e-18 97.4 54 75.9
RcHm_v2.0_Chr6g0254811 Rosa chinensis HOM05D006097 ORTHO05D020391 3.7e-18 97.4 56 76.8
SMO005G0015 Selaginella moellendorffii HOM05D006097 ORTHO05D011308 8.3e-18 96.3 105 46.7
SMO125G0001 Selaginella moellendorffii HOM05D009261 ORTHO05D011006 7.0e-17 93.2 182 35.2
SMO274G0019 Selaginella moellendorffii HOM05D009261 ORTHO05D011006 1.2e-16 92.4 110 43.6
SMO212G0005 Selaginella moellendorffii HOM05D009261 ORTHO05D011006 1.3e-15 89.0 115 41.7
SMO009G0029 Selaginella moellendorffii HOM05D009261 ORTHO05D011006 1.7e-15 88.6 113 42.5
CDE06G1678 Ceratophyllum demersum HOM05D006097 ORTHO05D008538 5.7e-11 73.6 55 60.0
Hma1.2p1_0269F.1_g107740 Hydrangea macrophylla HOM05D006097 ORTHO05D020391 3.7e-10 70.9 35 94.3
Hma1.2p1_3244F.1_g334325 Hydrangea macrophylla HOM05D006097 ORTHO05D020391 3.7e-10 70.9 35 94.3
Haze_01792 Corylus avellana HOM05D000242 ORTHO05D000700 4.9e-10 70.5 48 72.9
Nn313s46297 Nelumbo nucifera HOM05D006097 ORTHO05D008538 1.4e-09 68.9 46 69.6
BolC8t50740H Brassica oleracea HOM05D035890 ORTHO05D033370 1.0e-07 62.8 42 69.0
C08p31170 Brassica napus HOM05D035890 ORTHO05D033370 2.5e-06 58.2 42 66.7
DCAR_031236 Daucus carota HOM05D006097 ORTHO05D020391 3.3e-06 57.8 41 56.1


User provided reference genes

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