Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv21956 Davidia involucrata HOM05D003673 ORTHO05D004764 7.7e-62 240.4 126 100.0
Dinv07089 Davidia involucrata HOM05D003673 ORTHO05D004764 3.0e-37 158.7 98 83.7
Dinv07706 Davidia involucrata HOM05D003673 ORTHO05D004764 8.6e-37 157.1 98 82.7
TAR626G0427 Trochodendron aralioides HOM05D003673 ORTHO05D004764 2.1e-30 136.0 110 69.1
Medtr1g022325 Medicago truncatula HOM05D003673 ORTHO05D004764 9.6e-28 127.1 98 69.4
Medtr5g091060 Medicago truncatula HOM05D003673 ORTHO05D004764 1.2e-27 126.7 110 65.5
Nn7g37943 Nelumbo nucifera HOM05D003673 ORTHO05D004764 1.6e-27 126.3 110 64.5
Lj8C8T1 Lonicera japonica HOM05D003673 ORTHO05D004764 4.7e-27 124.8 97 63.9
Medtr5g090990 Medicago truncatula HOM05D003673 ORTHO05D004764 8.1e-27 124.0 111 62.2
CSS0042622 Camellia sinensis var. sinensis HOM05D003673 ORTHO05D004764 1.1e-26 123.6 100 68.0
TPR.G10168 Trifolium pratense HOM05D003673 ORTHO05D004764 1.4e-26 123.2 97 67.0
Dinv42661 Davidia involucrata HOM05D002888 ORTHO05D003321 1.8e-26 122.9 76 84.2
Hma1.2p1_0033F.1_g021200 Hydrangea macrophylla HOM05D003673 ORTHO05D004764 2.4e-26 122.5 100 68.0
Aqoxy1G01890 Aquilegia oxysepala HOM05D003673 ORTHO05D004764 4.0e-26 121.7 110 60.9
Lalb_Chr04g0248921 Lupinus albus HOM05D003673 ORTHO05D004764 5.2e-26 121.3 100 65.0
Psat2g017880 Pisum sativum HOM05D003673 ORTHO05D004764 5.2e-26 121.3 111 61.3
Potri.002G057400 Populus trichocarpa HOM05D003673 ORTHO05D004764 5.2e-26 121.3 136 55.9
Ciclev10031587m.g Citrus clementina HOM05D003673 ORTHO05D004764 1.2e-25 120.2 102 61.8
Thecc.01G168600 Theobroma cacao HOM05D003673 ORTHO05D004764 3.4e-25 118.6 115 60.0
vmacro04781 Vaccinium macrocarpon HOM05D003673 ORTHO05D004764 4.4e-25 118.2 98 65.3
Sabra02G0046800 Salix brachista HOM05D003673 ORTHO05D004764 5.8e-25 117.9 130 57.7
Aqoxy1G01891 Aquilegia oxysepala HOM05D003673 ORTHO05D004764 7.6e-25 117.5 100 61.0
ClCG11G016540 Citrullus lanatus HOM05D003673 ORTHO05D004764 7.6e-25 117.5 103 63.1
Ca_06264_v3 Cicer arietinum L. HOM05D003673 ORTHO05D004764 9.9e-25 117.1 100 64.0
Ca_30265_v3 Cicer arietinum L. HOM05D003673 ORTHO05D004764 9.9e-25 117.1 100 64.0
Medtr5g090980 Medicago truncatula HOM05D003673 ORTHO05D004764 9.9e-25 117.1 111 59.5
Cpa.g.sc50.111 Carica papaya HOM05D003673 ORTHO05D004764 2.2e-24 115.9 114 59.6
Gohir.D07G086000 Gossypium hirsutum HOM05D003673 ORTHO05D004764 2.9e-24 115.5 98 66.3
Lsat_1_v5_gn_2_96721 Lactuca sativa HOM05D003673 ORTHO05D004764 3.8e-24 115.2 112 60.7
CANSAT64G0777 Cannabis sativa HOM05D003673 ORTHO05D004764 4.9e-24 114.8 97 66.0
Eucgr.A02022 Eucalyptus grandis HOM05D003673 ORTHO05D004764 4.9e-24 114.8 103 60.2
arahy.Tifrunner.gnm1.ann1.FDUH0H Arachis hypogaea HOM05D003673 ORTHO05D004764 6.4e-24 114.4 100 65.0
Gorai.001G092000 Gossypium raimondii HOM05D003673 ORTHO05D004764 6.4e-24 114.4 98 65.3
PGR042G2748 Punica granatum HOM05D003673 ORTHO05D004764 6.4e-24 114.4 131 52.7
HanXRQChr14g0451901 Helianthus annuus HOM05D003673 ORTHO05D004764 1.1e-23 113.6 109 59.6
TWI59G0698 Tripterygium wilfordii HOM05D003673 ORTHO05D004764 1.1e-23 113.6 101 63.4
arahy.Tifrunner.gnm1.ann1.I7WXBP Arachis hypogaea HOM05D003673 ORTHO05D004764 1.4e-23 113.2 100 65.0
Gohir.A07G080400 Gossypium hirsutum HOM05D003673 ORTHO05D004764 1.4e-23 113.2 98 65.3
Thecc.01G168800 Theobroma cacao HOM05D003673 ORTHO05D004764 1.4e-23 113.2 111 60.4
Actinidia24401 Actinidia chinensis HOM05D003673 ORTHO05D004764 1.9e-23 112.8 103 61.2
CANSAT64G0060 Cannabis sativa HOM05D003673 ORTHO05D004764 1.9e-23 112.8 111 59.5
COL.COLO4_38400 Corchorus olitorius HOM05D003673 ORTHO05D004764 1.9e-23 112.8 100 62.0
Rhsim07G0197900 Rhododendron simsii HOM05D003673 ORTHO05D004764 1.9e-23 112.8 99 60.6
FAN05G2105 Fragaria x ananassa HOM05D003673 ORTHO05D004764 2.4e-23 112.5 100 59.0
Manes.02G088900 Manihot esculenta HOM05D003673 ORTHO05D004764 3.2e-23 112.1 103 61.2
CsaV3_4G032000 Cucumis sativus L. HOM05D003673 ORTHO05D004764 4.2e-23 111.7 101 61.4
Lsat_1_v5_gn_6_42781 Lactuca sativa HOM05D003673 ORTHO05D004764 4.2e-23 111.7 112 58.0
Aa31LG1G7910 Aethionema arabicum HOM05D003673 ORTHO05D004764 5.4e-23 111.3 107 56.1
Sp1g05330 Schrenkiella parvula HOM05D003673 ORTHO05D004764 5.4e-23 111.3 107 57.0
Sed0005423 Sechium edule HOM05D003673 ORTHO05D004764 5.4e-23 111.3 113 59.3
AT1G06570 Arabidopsis thaliana HOM05D003673 ORTHO05D004764 7.1e-23 110.9 107 57.0
ECA233G6193 Erigeron canadensis HOM05D003673 ORTHO05D004764 7.1e-23 110.9 112 57.1
C05p04810 Brassica napus HOM05D003673 ORTHO05D004764 9.3e-23 110.5 99 61.6
CANSAT64G2396 Cannabis sativa HOM05D003673 ORTHO05D004764 9.3e-23 110.5 97 62.9
COL.COLO4_38402 Corchorus olitorius HOM05D003673 ORTHO05D004764 9.3e-23 110.5 98 61.2
MELO3C022961.2 Cucumis melo HOM05D003673 ORTHO05D004764 9.3e-23 110.5 103 59.2
AL1G16600 Arabidopsis lyrata HOM05D003673 ORTHO05D004764 1.2e-22 110.2 107 57.9
BcaC07g42060 Brassica carinata HOM05D003673 ORTHO05D004764 1.2e-22 110.2 105 58.1
BcaNung07075 Brassica carinata HOM05D003673 ORTHO05D004764 1.2e-22 110.2 99 62.6
Thhalv10007634m.g Eutrema salsugineum HOM05D003673 ORTHO05D004764 1.2e-22 110.2 107 57.9
MD17G1134800 Malus domestica HOM05D003673 ORTHO05D004764 1.2e-22 110.2 105 58.1
Prupe.3G177700 Prunus persica HOM05D003673 ORTHO05D004764 1.2e-22 110.2 103 58.3
PSO210G1881 Papaver somniferum HOM05D003673 ORTHO05D004764 2.1e-22 109.4 111 55.0
A09p66930 Brassica napus HOM05D003673 ORTHO05D004764 2.7e-22 109.0 95 63.2
C08p51160 Brassica napus HOM05D003673 ORTHO05D004764 3.5e-22 108.6 97 61.9
BolC8t52642H Brassica oleracea HOM05D003673 ORTHO05D004764 3.5e-22 108.6 97 61.9
ECA238G4715 Erigeron canadensis HOM05D003673 ORTHO05D004764 3.5e-22 108.6 106 53.8
Eucgr.A02024 Eucalyptus grandis HOM05D003673 ORTHO05D004764 3.5e-22 108.6 137 51.1
THA.LOC104815838 Tarenaya hassleriana HOM05D003673 ORTHO05D004764 3.5e-22 108.6 104 59.6
CARHR006180 Cardamine hirsuta HOM05D003673 ORTHO05D004764 4.6e-22 108.2 97 61.9
BraA09t42028Z Brassica rapa HOM05D003673 ORTHO05D004764 6.0e-22 107.8 97 61.9
FvH4_6g38670 Fragaria vesca HOM05D003673 ORTHO05D004764 6.0e-22 107.8 100 58.0
FAN02G0649 Fragaria x ananassa HOM05D003673 ORTHO05D004764 6.0e-22 107.8 101 57.4
FAN09G3261 Fragaria x ananassa HOM05D003673 ORTHO05D004764 6.0e-22 107.8 101 57.4
FAN14G2563 Fragaria x ananassa HOM05D003673 ORTHO05D004764 6.0e-22 107.8 100 58.0
CiPaw.03G191900 Carya illinoinensis HOM05D003673 ORTHO05D004764 7.8e-22 107.5 103 57.3
CDE02G2922 Ceratophyllum demersum HOM05D003673 ORTHO05D004764 7.8e-22 107.5 115 55.7
PSO144G0168 Papaver somniferum HOM05D003673 ORTHO05D004764 7.8e-22 107.5 98 58.2
VMungo0647G2026 Vigna mungo HOM05D003673 ORTHO05D004764 7.8e-22 107.5 135 51.9
Phvul.008G194300 Phaseolus vulgaris HOM05D003673 ORTHO05D004764 1.0e-21 107.1 100 59.0
BolC5t29254H Brassica oleracea HOM05D003673 ORTHO05D004764 1.3e-21 106.7 99 61.6
Carub.0001s0594 Capsella rubella HOM05D003673 ORTHO05D004764 1.3e-21 106.7 107 56.1
EL10Ac9g22832 Beta vulgaris HOM05D003673 ORTHO05D004764 2.3e-21 105.9 110 58.2
LjContig00049g0013493 Lotus japonicus HOM05D003673 ORTHO05D004764 2.3e-21 105.9 100 59.0
Haze_13556 Corylus avellana HOM05D003673 ORTHO05D004764 3.9e-21 105.1 103 55.3
CDE05G0951 Ceratophyllum demersum HOM05D003673 ORTHO05D004764 5.1e-21 104.8 103 59.2
Glyma.14G030400 Glycine max HOM05D003673 ORTHO05D004764 5.1e-21 104.8 101 55.4
A10p05210 Brassica napus HOM05D003673 ORTHO05D004764 8.7e-21 104.0 107 55.1
Cfa023358 Carpinus fangiana HOM05D003673 ORTHO05D004764 1.1e-20 103.6 103 55.3
PSO170G5322 Papaver somniferum HOM05D003673 ORTHO05D004764 1.1e-20 103.6 98 56.1
RcHm_v2.0_Chr2g0152131 Rosa chinensis HOM05D003673 ORTHO05D004764 1.1e-20 103.6 101 55.4
BraA10t42788Z Brassica rapa HOM05D003673 ORTHO05D004764 1.9e-20 102.8 107 53.3
Ah.02g114000 Amaranthus hybridus HOM05D003673 ORTHO05D004764 2.5e-20 102.4 98 57.1
AUR62017589 Chenopodium quinoa HOM05D003673 ORTHO05D004764 2.5e-20 102.4 97 58.8
HanXRQChr02g0055101 Helianthus annuus HOM05D003673 ORTHO05D004764 2.5e-20 102.4 97 57.7
PSO210G5105 Papaver somniferum HOM05D003673 ORTHO05D004764 2.5e-20 102.4 115 47.0
RcHm_v2.0_Chr2g0152141 Rosa chinensis HOM05D003673 ORTHO05D004764 3.3e-20 102.1 101 56.4
Eucgr.A02023 Eucalyptus grandis HOM05D003673 ORTHO05D004764 4.3e-20 101.7 103 52.4
arahy.Tifrunner.gnm1.ann1.3I6JIA Arachis hypogaea HOM05D003673 ORTHO05D004764 5.6e-20 101.3 97 59.8
MD09G1148400 Malus domestica HOM05D003673 ORTHO05D004764 5.6e-20 101.3 104 55.8
BcaB02g06780 Brassica carinata HOM05D003673 ORTHO05D004764 9.6e-20 100.5 105 54.3
AUR62015128 Chenopodium quinoa HOM05D003673 ORTHO05D004764 9.6e-20 100.5 97 57.7
Hund22282 Selenicereus undatus HOM05D003673 ORTHO05D004764 9.6e-20 100.5 143 49.0
Sc19g0001760 Simmondsia chinensis HOM05D003673 ORTHO05D004764 2.1e-19 99.4 105 54.3
QL08p044989 Quercus lobata HOM05D003673 ORTHO05D004764 2.8e-19 99.0 115 50.4
AUR62016194 Chenopodium quinoa HOM05D003673 ORTHO05D004764 8.1e-19 97.4 98 55.1
MSTRG.14903 Avicennia marina HOM05D003673 ORTHO05D004764 1.1e-18 97.1 98 56.1
AUR62035117 Chenopodium quinoa HOM05D003673 ORTHO05D017143 1.1e-18 97.1 98 54.1
AUR62039294 Chenopodium quinoa HOM05D003673 ORTHO05D017143 1.1e-18 97.1 98 54.1
AUR62039298 Chenopodium quinoa HOM05D003673 ORTHO05D017143 1.1e-18 97.1 98 54.1
arahy.Tifrunner.gnm1.ann1.KE2YGW Arachis hypogaea HOM05D003673 ORTHO05D004764 3.1e-18 95.5 90 61.1
PSO210G6115 Papaver somniferum HOM05D003673 ORTHO05D004764 3.1e-18 95.5 107 52.3
DCAR_023045 Daucus carota HOM05D003673 ORTHO05D004764 5.3e-18 94.7 97 53.6
Migut.M00071 Erythranthe guttata HOM05D003673 ORTHO05D004764 5.3e-18 94.7 98 55.1
EL10Ac9g22831 Beta vulgaris HOM05D003673 ORTHO05D004764 1.2e-17 93.6 94 57.4
PGSC0003DMG400017707 Solanum tuberosum HOM05D003673 ORTHO05D004764 1.2e-17 93.6 102 54.9
PGSC0003DMG400017420 Solanum tuberosum HOM05D003673 ORTHO05D004764 1.5e-17 93.2 106 50.9
SalBow7G3717 Salvia bowleyana HOM05D004564 ORTHO05D006106 2.0e-17 92.8 101 55.4
SalBow1G2057 Salvia bowleyana HOM05D003673 ORTHO05D004764 2.6e-17 92.4 101 55.4
Glyma.02G284600 Glycine max HOM05D003673 ORTHO05D004764 3.4e-17 92.0 100 52.0
Solyc07g045050.3 Solanum lycopersicum HOM05D003673 ORTHO05D004764 3.4e-17 92.0 107 51.4
Sopen07g023610 Solanum pennellii HOM05D003673 ORTHO05D004764 4.4e-17 91.7 107 50.5
unitig_899.g15456 Utricularia gibba HOM05D003673 ORTHO05D004764 7.6e-17 90.9 101 53.5
Solyc05g041200.4 Solanum lycopersicum HOM05D003673 ORTHO05D004764 3.8e-16 88.6 102 53.9
SGA_v2.0_scaffold73G24479 Striga asiatica HOM05D003673 ORTHO05D004764 3.8e-16 88.6 98 51.0
Sopen05g024810 Solanum pennellii HOM05D003673 ORTHO05D004764 4.9e-16 88.2 102 53.9
Ah.01g013590 Amaranthus hybridus HOM05D003673 ORTHO05D004764 6.4e-16 87.8 110 49.1
Thecc.01G169100 Theobroma cacao HOM05D003673 ORTHO05D004764 8.4e-16 87.4 121 47.9
Nitab4.5_0002201g0040 Nicotiana tabacum HOM05D003673 ORTHO05D004764 1.4e-15 86.7 102 52.0
Nitab4.5_0000006g0440 Nicotiana tabacum HOM05D003673 ORTHO05D004764 2.4e-15 85.9 102 52.9
PSO675G5654 Papaver somniferum HOM05D003673 ORTHO05D004764 2.4e-15 85.9 95 51.6
Peaxi162Scf00416g00004 Petunia axillaris HOM05D003673 ORTHO05D004764 3.2e-15 85.5 102 52.0
PSO675G0095 Papaver somniferum HOM05D003673 ORTHO05D004764 5.4e-15 84.7 90 53.3
Oeu051389.1 Olea europaea HOM05D003673 ORTHO05D004764 1.6e-14 83.2 98 51.0
MBI18_g13605_MAGBIO Magnolia biondii HOM05D003673 ORTHO05D004764 1.7e-13 79.7 107 48.6
CAN.G7.15 Capsicum annuum HOM05D003673 ORTHO05D004764 2.5e-12 75.9 102 48.0
AUR62039302 Chenopodium quinoa HOM05D003673 ORTHO05D017143 2.5e-12 75.9 100 49.0
Potri.005G205200 Populus trichocarpa HOM05D003673 ORTHO05D004764 4.3e-12 75.1 84 53.6
HPP92_002268 Vanilla planifolia HOM05D003673 ORTHO05D004764 4.3e-12 75.1 97 44.3
Zm00001eb232960 Zea mays HOM05D003673 ORTHO05D004764 4.3e-12 75.1 92 48.9
AUR62044532 Chenopodium quinoa HOM05D003673 ORTHO05D017143 5.3e-10 68.2 74 51.4
Cre09.g398993 Chlamydomonas reinhardtii HOM05D003673 ORTHO05D004764 1.2e-09 67.0 97 42.3
Cre09.g399030 Chlamydomonas reinhardtii HOM05D003673 ORTHO05D004764 1.2e-09 67.0 97 42.3
PRCOL_00001771 Prasinoderma coloniale HOM05D003673 ORTHO05D004764 4.5e-09 65.1 103 37.9
Pp3c1_27020 Physcomitrium patens HOM05D003673 ORTHO05D004764 1.3e-08 63.5 101 43.6
SMO118G0557 Selaginella moellendorffii HOM05D003673 ORTHO05D004764 1.3e-08 63.5 90 47.8
Pp3c2_15470 Physcomitrium patens HOM05D003673 ORTHO05D004764 2.9e-08 62.4 101 42.6
SEGI_30126 Sequoiadendron giganteum HOM05D003673 ORTHO05D004764 3.8e-08 62.0 90 44.4
MD13G1156600 Malus domestica HOM05D003673 ORTHO05D004764 6.4e-08 61.2 85 45.9
Mapoly0126s0038 Marchantia polymorpha HOM05D003673 ORTHO05D004764 8.4e-08 60.8 90 42.2
Zm00001eb304950 Zea mays HOM05D003673 ORTHO05D004764 3.2e-07 58.9 99 40.4
COL.COLO4_19675 Corchorus olitorius HOM05D003673 ORTHO05D163473 5.5e-07 58.2 127 36.2
SMO358G0369 Selaginella moellendorffii HOM05D003673 ORTHO05D004764 7.1e-07 57.8 102 41.2
Cfa023357 Carpinus fangiana HOM05D003673 ORTHO05D017143 3.5e-06 55.5 40 70.0
AagrBONN_evm.TU.Sc2ySwM_368.1457 Anthoceros agrestis HOM05D003673 ORTHO05D004764 4.6e-06 55.1 92 40.2
MCO11G070 Micromonas commoda HOM05D003673 ORTHO05D004764 6.0e-06 54.7 96 39.6


User provided reference genes

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