Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv21909 Davidia involucrata HOM05D005837 ORTHO05D007594 6.7e-137 490.7 258 100.0
Dinv13188 Davidia involucrata HOM05D005837 ORTHO05D007594 2.9e-124 448.7 255 92.9
TAR376G0564 Trochodendron aralioides HOM05D005837 ORTHO05D007594 7.2e-115 417.5 253 85.0
GSVIVG01002467001 Vitis vinifera HOM05D005837 ORTHO05D007594 2.1e-114 416.0 256 83.6
CSS0040315 Camellia sinensis var. sinensis HOM05D005837 ORTHO05D007594 2.8e-114 415.6 256 84.0
Hma1.2p1_0047F.1_g027810 Hydrangea macrophylla HOM05D005837 ORTHO05D007594 4.7e-114 414.8 256 85.2
Lj4A891G48 Lonicera japonica HOM05D005837 ORTHO05D007594 4.7e-114 414.8 258 83.3
Rhsim08G0010400 Rhododendron simsii HOM05D005837 ORTHO05D007594 8.0e-114 414.1 256 83.6
Nn5g30122 Nelumbo nucifera HOM05D005837 ORTHO05D007594 3.0e-113 412.1 256 83.6
Actinidia28231 Actinidia chinensis HOM05D005837 ORTHO05D007594 5.2e-113 411.4 256 83.6
CSS0022010 Camellia sinensis var. sinensis HOM05D005837 ORTHO05D007594 4.9e-111 404.8 255 82.7
Duzib147G0987 Durio zibethinus HOM05D005837 ORTHO05D007594 6.3e-111 404.4 253 82.6
Potri.005G075600 Populus trichocarpa HOM05D005837 ORTHO05D007594 6.3e-111 404.4 253 81.8
Potri.007G092800 Populus trichocarpa HOM05D005837 ORTHO05D007594 1.8e-110 402.9 253 81.4
SGA_v2.0_scaffold34G13592 Striga asiatica HOM05D005837 ORTHO05D007594 1.8e-110 402.9 259 78.8
Sabra05G0062100 Salix brachista HOM05D005837 ORTHO05D007594 7.0e-110 401.0 253 81.4
Gorai.007G060800 Gossypium raimondii HOM05D005837 ORTHO05D007594 9.2e-110 400.6 253 81.0
Solyc05g051590.3 Solanum lycopersicum HOM05D005837 ORTHO05D007594 9.2e-110 400.6 258 79.8
COL.COLO4_09964 Corchorus olitorius HOM05D005837 ORTHO05D007594 1.2e-109 400.2 254 81.5
Duzib264G0353 Durio zibethinus HOM05D005837 ORTHO05D007594 1.2e-109 400.2 253 81.0
Gohir.D11G055600 Gossypium hirsutum HOM05D005837 ORTHO05D007594 1.2e-109 400.2 253 81.4
Sopen05g030040 Solanum pennellii HOM05D005837 ORTHO05D007594 2.0e-109 399.4 258 79.8
Thecc.01G101500 Theobroma cacao HOM05D005837 ORTHO05D007594 4.6e-109 398.3 237 85.7
PGSC0003DMG400007222 Solanum tuberosum HOM05D005837 ORTHO05D007594 5.9e-109 397.9 258 79.5
Actinidia28865 Actinidia chinensis HOM05D005837 ORTHO05D007594 1.3e-108 396.7 251 82.9
Migut.L00122 Erythranthe guttata HOM05D005837 ORTHO05D007594 1.3e-108 396.7 259 79.2
Gohir.D11G221614 Gossypium hirsutum HOM05D005837 ORTHO05D007594 2.3e-108 396.0 253 80.2
Gorai.007G238700 Gossypium raimondii HOM05D005837 ORTHO05D007594 2.3e-108 396.0 253 80.2
QL06p049517 Quercus lobata HOM05D005837 ORTHO05D007594 2.3e-108 396.0 254 79.1
Prupe.6G187000 Prunus persica HOM05D005837 ORTHO05D007594 3.9e-108 395.2 253 79.4
TWI53G1711 Tripterygium wilfordii HOM05D005837 ORTHO05D007594 6.6e-108 394.4 253 79.4
Atru.chr4.64 Acer truncatum HOM05D005837 ORTHO05D007594 8.6e-108 394.0 255 80.8
CiPaw.04G099500 Carya illinoinensis HOM05D005837 ORTHO05D007594 1.1e-107 393.7 253 79.8
TWI77G0214 Tripterygium wilfordii HOM05D005837 ORTHO05D007594 1.1e-107 393.7 253 79.4
Gohir.A11G201400 Gossypium hirsutum HOM05D005837 ORTHO05D007594 1.5e-107 393.3 253 79.4
MD01G1029800 Malus domestica HOM05D005837 ORTHO05D007594 2.5e-107 392.5 253 79.1
VMungo0251G2060 Vigna mungo HOM05D005837 ORTHO05D007594 2.5e-107 392.5 238 81.9
FAN23G0829 Fragaria x ananassa HOM05D005837 ORTHO05D007594 5.6e-107 391.3 252 79.4
CANSAT01G1018 Cannabis sativa HOM05D005837 ORTHO05D007594 7.3e-107 391.0 256 76.6
Cfa002663 Carpinus fangiana HOM05D005837 ORTHO05D007594 1.2e-106 390.2 254 78.7
Cc07_g15220 Coffea canephora HOM05D005837 ORTHO05D007594 1.6e-106 389.8 258 77.9
FAN26G1738 Fragaria x ananassa HOM05D005837 ORTHO05D007594 1.6e-106 389.8 251 79.3
RcHm_v2.0_Chr2g0113501 Rosa chinensis HOM05D005837 ORTHO05D007594 1.6e-106 389.8 251 79.3
SalBow5G3973 Salvia bowleyana HOM05D005837 ORTHO05D007594 1.6e-106 389.8 253 79.4
SalBow5G4805 Salvia bowleyana HOM05D005837 ORTHO05D007594 1.6e-106 389.8 253 79.4
FvH4_1g20890 Fragaria vesca HOM05D005837 ORTHO05D007594 2.8e-106 389.0 252 79.0
FAN19G3104 Fragaria x ananassa HOM05D005837 ORTHO05D007594 2.8e-106 389.0 252 79.0
FAN28G0473 Fragaria x ananassa HOM05D005837 ORTHO05D007594 8.0e-106 387.5 252 79.0
Aqoxy5G01893 Aquilegia oxysepala HOM05D005837 ORTHO05D007594 1.0e-105 387.1 253 77.9
Glyma.08G135800 Glycine max HOM05D005837 ORTHO05D007594 1.4e-105 386.7 253 77.1
MBI05_g19355_MAGBIO Magnolia biondii HOM05D005837 ORTHO05D007594 1.4e-105 386.7 251 78.1
Phvul.002G256000 Phaseolus vulgaris HOM05D005837 ORTHO05D007594 1.4e-105 386.7 237 80.6
MSTRG.15711 Avicennia marina HOM05D005837 ORTHO05D007594 3.1e-105 385.6 253 78.3
Lalb_Chr07g0185181 Lupinus albus HOM05D005837 ORTHO05D007594 3.1e-105 385.6 243 80.2
PGR102G0026 Punica granatum HOM05D005837 ORTHO05D007594 3.1e-105 385.6 252 77.4
DCAR_014225 Daucus carota HOM05D005837 ORTHO05D007594 4.0e-105 385.2 259 77.6
MD15G1324100 Malus domestica HOM05D005837 ORTHO05D007594 8.9e-105 384.0 253 77.5
arahy.Tifrunner.gnm1.ann1.UTAL3L Arachis hypogaea HOM05D005837 ORTHO05D007594 1.5e-104 383.3 244 79.9
HanXRQChr10g0305351 Helianthus annuus HOM05D005837 ORTHO05D007594 2.0e-104 382.9 248 77.4
THA.LOC104798971 Tarenaya hassleriana HOM05D005837 ORTHO05D007594 2.0e-104 382.9 237 81.4
Haze_24932 Corylus avellana HOM05D005837 ORTHO05D007594 2.6e-104 382.5 248 79.0
Eucgr.H04785 Eucalyptus grandis HOM05D005837 ORTHO05D007594 9.8e-104 380.6 253 75.9
TPR.G6228 Trifolium pratense HOM05D005837 ORTHO05D007594 1.3e-103 380.2 253 78.3
Lj4g0008298 Lotus japonicus HOM05D005837 ORTHO05D007594 1.7e-103 379.8 253 77.5
HanXRQChr09g0260241 Helianthus annuus HOM05D005837 ORTHO05D007594 2.9e-103 379.0 256 72.7
PSO447G0182 Papaver somniferum HOM05D005837 ORTHO05D007594 2.9e-103 379.0 246 76.4
ClCG01G018760 Citrullus lanatus HOM05D005837 ORTHO05D007594 4.9e-103 378.3 240 80.0
MELO3C007756.2 Cucumis melo HOM05D005837 ORTHO05D007594 4.9e-103 378.3 252 76.6
Ciclev10025805m.g Citrus clementina HOM05D005837 ORTHO05D007594 1.4e-102 376.7 259 75.7
CsaV3_6G045430 Cucumis sativus L. HOM05D005837 ORTHO05D007594 1.4e-102 376.7 240 79.6
Ca_17737_v3 Cicer arietinum L. HOM05D005837 ORTHO05D007594 2.4e-102 375.9 256 76.2
PSO210G6484 Papaver somniferum HOM05D005837 ORTHO05D007594 5.4e-102 374.8 246 76.4
Sed0019406 Sechium edule HOM05D005837 ORTHO05D007594 7.0e-102 374.4 256 75.0
Carub.0008s2584 Capsella rubella HOM05D005837 ORTHO05D007594 2.0e-101 372.9 251 76.9
HPP92_016352 Vanilla planifolia HOM05D005837 ORTHO05D007594 2.0e-101 372.9 243 76.1
Sp2g28080 Schrenkiella parvula HOM05D005837 ORTHO05D007594 7.8e-101 370.9 241 79.3
Medtr8g090230 Medicago truncatula HOM05D005837 ORTHO05D007594 1.7e-100 369.8 236 78.4
ATR0118G022 Amborella trichopoda HOM05D005837 ORTHO05D007594 3.0e-100 369.0 240 75.4
BraA09t36542Z Brassica rapa HOM05D005837 ORTHO05D007594 3.9e-100 368.6 242 78.1
CARHR293770 Cardamine hirsuta HOM05D005837 ORTHO05D007594 3.9e-100 368.6 241 78.4
Gohir.A11G052200 Gossypium hirsutum HOM05D005837 ORTHO05D007594 5.0e-100 368.2 253 75.5
Sc16g0005040 Simmondsia chinensis HOM05D005837 ORTHO05D007594 6.6e-100 367.9 252 77.4
BcaC01g02731 Brassica carinata HOM05D005837 ORTHO05D007594 1.1e-99 367.1 242 78.5
C03p61190 Brassica napus HOM05D005837 ORTHO05D007594 1.1e-99 367.1 242 78.5
BolC3t18379H Brassica oleracea HOM05D005837 ORTHO05D007594 1.1e-99 367.1 242 78.5
A09p08910 Brassica napus HOM05D005837 ORTHO05D007594 1.5e-99 366.7 242 77.7
Ah.03g143560 Amaranthus hybridus HOM05D005837 ORTHO05D007594 2.5e-99 365.9 244 75.8
BraA06t26113Z Brassica rapa HOM05D005837 ORTHO05D007594 3.3e-99 365.5 235 80.0
A06p31820 Brassica napus HOM05D005837 ORTHO05D007594 5.6e-99 364.8 234 80.3
Thhalv10004589m.g Eutrema salsugineum HOM05D005837 ORTHO05D007594 5.6e-99 364.8 251 75.7
BcaB02g09852 Brassica carinata HOM05D005837 ORTHO05D007594 7.3e-99 364.4 241 77.2
BcaB02g09853 Brassica carinata HOM05D005837 ORTHO05D007594 7.3e-99 364.4 241 77.2
Psat7g054880 Pisum sativum HOM05D005837 ORTHO05D007594 7.3e-99 364.4 249 77.1
BolC9t53935H Brassica oleracea HOM05D005837 ORTHO05D007594 9.5e-99 364.0 236 79.2
AL8G42500 Arabidopsis lyrata HOM05D005837 ORTHO05D007594 1.6e-98 363.2 251 76.5
BcaB04g20002 Brassica carinata HOM05D005837 ORTHO05D007594 2.1e-98 362.8 251 74.9
AT5G65000 Arabidopsis thaliana HOM05D005837 ORTHO05D007594 1.4e-97 360.1 251 75.7
Aa31LG1G16930 Aethionema arabicum HOM05D005837 ORTHO05D007594 2.3e-97 359.4 254 74.8
Peaxi162Scf00295g01018 Petunia axillaris HOM05D005837 ORTHO05D007594 4.0e-97 358.6 254 73.6
BcaC04g23271 Brassica carinata HOM05D005837 ORTHO05D007594 1.2e-96 357.1 236 77.5
C09p10350 Brassica napus HOM05D005837 ORTHO05D007594 1.2e-96 357.1 236 77.5
AUR62003793 Chenopodium quinoa HOM05D005837 ORTHO05D007594 1.2e-96 357.1 259 71.4
EL10Ac6g15104 Beta vulgaris HOM05D005837 ORTHO05D007594 1.5e-96 356.7 234 76.5
Nitab4.5_0000715g0030 Nicotiana tabacum HOM05D005837 ORTHO05D007594 2.6e-96 355.9 256 73.8
unitig_32.g10697 Utricularia gibba HOM05D005837 ORTHO05D007594 8.3e-95 350.9 258 67.4
Lsat_1_v5_gn_4_141261 Lactuca sativa HOM05D005837 ORTHO05D007594 3.9e-92 342.0 212 83.0
ECA232G4987 Erigeron canadensis HOM05D005837 ORTHO05D007594 6.6e-92 341.3 237 75.1
SHI29446 Sapria himalayana HOM05D005837 ORTHO05D007594 7.3e-91 337.8 247 71.3
Manes.12G134900 Manihot esculenta HOM05D005837 ORTHO05D007594 2.8e-90 335.9 198 86.4
Oeu053549.4 Olea europaea HOM05D005837 ORTHO05D007594 2.8e-90 335.9 255 71.0
Nitab4.5_0006967g0030 Nicotiana tabacum HOM05D005837 ORTHO05D007594 4.0e-89 332.0 256 69.5
Hund16285 Selenicereus undatus HOM05D005837 ORTHO05D007594 2.9e-87 325.9 323 57.9
Zm00001eb244760 Zea mays HOM05D005837 ORTHO05D007594 3.7e-87 325.5 237 70.9
AUR62002009 Chenopodium quinoa HOM05D005837 ORTHO05D007594 1.6e-85 320.1 211 78.7
SEGI_29496 Sequoiadendron giganteum HOM05D005837 ORTHO05D007594 6.6e-76 288.1 225 68.0
Zm00001eb182830 Zea mays HOM05D005837 ORTHO05D007594 1.9e-75 286.6 212 68.9
SMO169G0194 Selaginella moellendorffii HOM05D005837 ORTHO05D007594 2.4e-70 269.6 227 60.4
Pp3c3_32740 Physcomitrium patens HOM05D005837 ORTHO05D007594 2.0e-64 250.0 230 57.4
vmacro18603 Vaccinium macrocarpon HOM05D005837 ORTHO05D007594 3.2e-62 242.7 141 86.5
CDE10G0517 Ceratophyllum demersum HOM05D005837 ORTHO05D007594 6.5e-55 218.4 234 51.7
CBR_g39403 Chara braunii HOM05D005837 ORTHO05D007594 1.1e-54 217.6 229 50.7
Mapoly0120s0005 Marchantia polymorpha HOM05D005837 ORTHO05D007594 3.5e-53 212.6 174 61.5
RcHm_v2.0_Chr3g0453281 Rosa chinensis HOM05D005837 ORTHO05D007594 2.0e-48 196.8 113 85.8
RcHm_v2.0_Chr3g0467111 Rosa chinensis HOM05D005837 ORTHO05D007594 2.0e-48 196.8 113 85.8
MBI10_g33306_MAGBIO Magnolia biondii HOM05D000934 ORTHO05D000746 1.8e-44 183.7 120 74.2
Os02g0573300 Oryza sativa ssp. japonica HOM05D005837 ORTHO05D007594 2.9e-39 166.4 127 69.3
CAN.G151.30 Capsicum annuum HOM05D005837 ORTHO05D007594 3.9e-36 156.0 93 87.1
MBI10_g27985_MAGBIO Magnolia biondii HOM05D000934 ORTHO05D000746 2.0e-35 153.7 116 66.4
Oeu002173.1 Olea europaea HOM05D005837 ORTHO05D007594 3.1e-33 146.4 112 68.8
AagrBONN_evm.TU.Sc2ySwM_117.3229 Anthoceros agrestis HOM05D005837 ORTHO05D007594 1.5e-27 127.5 158 44.9
MCO05G725 Micromonas commoda HOM05D005837 ORTHO05D007594 2.2e-26 123.6 238 38.7
COL.COLO4_30268 Corchorus olitorius HOM05D005837 ORTHO05D161296 1.3e-10 71.2 110 43.6
Glyma.02G312000 Glycine max HOM05D001098 ORTHO05D002527 3.5e-08 63.2 226 27.9
CSS0035199 Camellia sinensis var. sinensis HOM05D001098 ORTHO05D002527 7.7e-08 62.0 240 27.5
Glyma.14G000600 Glycine max HOM05D001098 ORTHO05D002527 7.7e-08 62.0 226 27.4
arahy.Tifrunner.gnm1.ann1.N1X7B2 Arachis hypogaea HOM05D001098 ORTHO05D002527 2.2e-07 60.5 224 26.3
arahy.Tifrunner.gnm1.ann1.7NF1VE Arachis hypogaea HOM05D001098 ORTHO05D002527 3.8e-07 59.7 224 26.3
Gorai.009G232400 Gossypium raimondii HOM05D000266 ORTHO05D000819 1.9e-06 57.4 131 32.1
Gohir.A05G222300 Gossypium hirsutum HOM05D000266 ORTHO05D000819 4.2e-06 56.2 140 32.1
Gohir.D05G225100 Gossypium hirsutum HOM05D000266 ORTHO05D000819 4.2e-06 56.2 131 31.3
Gorai.009G232500 Gossypium raimondii HOM05D000266 ORTHO05D000819 4.2e-06 56.2 131 31.3
Gohir.D05G225000 Gossypium hirsutum HOM05D000266 ORTHO05D000819 7.2e-06 55.5 131 31.3
SalBow5G3634 Salvia bowleyana HOM05D000266 ORTHO05D000765 7.2e-06 55.5 166 29.5
Cpa.g.sc36.196 Carica papaya HOM05D000266 ORTHO05D000819 9.4e-06 55.1 152 30.9
Duzib093G2178 Durio zibethinus HOM05D000266 ORTHO05D000819 9.4e-06 55.1 147 30.6


User provided reference genes

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