Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv21566 Davidia involucrata HOM05D006973 ORTHO05D008636 3.2e-60 235.0 123 100.0
Manes.02G084300 Manihot esculenta HOM05D006973 ORTHO05D008636 1.3e-29 133.3 119 64.7
Rhsim06G0116300 Rhododendron simsii HOM05D006973 ORTHO05D008636 3.8e-29 131.7 108 67.6
Prupe.3G172700 Prunus persica HOM05D006973 ORTHO05D008636 6.5e-29 131.0 119 59.7
Potri.002G060100 Populus trichocarpa HOM05D006973 ORTHO05D008636 9.3e-28 127.1 118 63.6
Sabra02G0048600 Salix brachista HOM05D006973 ORTHO05D008636 3.9e-26 121.7 118 59.3
Potri.005G201500 Populus trichocarpa HOM05D006973 ORTHO05D008636 5.1e-26 121.3 121 60.3
Cfa021245 Carpinus fangiana HOM05D006973 ORTHO05D008636 1.1e-25 120.2 118 63.6
Thecc.01G161800 Theobroma cacao HOM05D006973 ORTHO05D008636 9.7e-25 117.1 114 61.4
TAR629G2498 Trochodendron aralioides HOM05D006973 ORTHO05D008636 4.8e-24 114.8 114 57.9
Actinidia32515 Actinidia chinensis HOM05D006973 ORTHO05D008636 1.4e-23 113.2 118 59.3
QL08p044096 Quercus lobata HOM05D006973 ORTHO05D008636 2.4e-23 112.5 127 58.3
Duzib187G1733 Durio zibethinus HOM05D006973 ORTHO05D008636 4.1e-23 111.7 111 59.5
Glyma.02G286900 Glycine max HOM05D006973 ORTHO05D008636 5.3e-23 111.3 87 66.7
Gohir.D11G064600 Gossypium hirsutum HOM05D006973 ORTHO05D008636 3.4e-22 108.6 116 52.6
Haze_13497 Corylus avellana HOM05D006973 ORTHO05D008636 5.9e-22 107.8 64 82.8
Duzib147G0021 Durio zibethinus HOM05D006973 ORTHO05D008636 5.9e-22 107.8 114 55.3
Gorai.007G069800 Gossypium raimondii HOM05D006973 ORTHO05D008636 5.9e-22 107.8 118 52.5
FAN02G1229 Fragaria x ananassa HOM05D006973 ORTHO05D008636 2.2e-21 105.9 124 54.0
Gohir.A11G060500 Gossypium hirsutum HOM05D006973 ORTHO05D008636 2.9e-21 105.5 115 52.2
RcHm_v2.0_Chr2g0151491 Rosa chinensis HOM05D006973 ORTHO05D008636 2.9e-21 105.5 124 52.4
FvH4_6g38230 Fragaria vesca HOM05D006973 ORTHO05D008636 6.5e-21 104.4 124 53.2
FAN14G5571 Fragaria x ananassa HOM05D006973 ORTHO05D008636 6.5e-21 104.4 124 53.2
FAN05G1052 Fragaria x ananassa HOM05D006973 ORTHO05D008636 8.5e-21 104.0 129 51.9
Nitab4.5_0001675g0100 Nicotiana tabacum HOM05D006973 ORTHO05D008636 1.1e-20 103.6 112 53.6
VMungo0647G1950 Vigna mungo HOM05D006973 ORTHO05D008636 9.3e-20 100.5 109 54.1
Glyma.14G028000 Glycine max HOM05D006973 ORTHO05D008636 2.1e-19 99.4 97 59.8
Peaxi162Scf00111g00009 Petunia axillaris HOM05D006973 ORTHO05D008636 2.7e-19 99.0 108 54.6
FAN09G4519 Fragaria x ananassa HOM05D006973 ORTHO05D008636 3.6e-19 98.6 117 53.8
Nn6g34359 Nelumbo nucifera HOM05D006973 ORTHO05D008636 3.6e-19 98.6 121 48.8
Nitab4.5_0003934g0010 Nicotiana tabacum HOM05D006973 ORTHO05D008636 6.1e-19 97.8 63 76.2
Phvul.008G191400 Phaseolus vulgaris HOM05D006973 ORTHO05D008636 6.1e-19 97.8 103 57.3
ClCG09G022400 Citrullus lanatus HOM05D006973 ORTHO05D008636 1.0e-18 97.1 118 51.7
Oeu040038.1 Olea europaea HOM05D006973 ORTHO05D008636 1.0e-18 97.1 117 55.6
CAN.G585.39 Capsicum annuum HOM05D006973 ORTHO05D008636 1.4e-18 96.7 63 77.8
CsaV3_6G038070 Cucumis sativus L. HOM05D006973 ORTHO05D008636 1.8e-18 96.3 118 51.7
Medtr5g091690 Medicago truncatula HOM05D006973 ORTHO05D008636 1.8e-18 96.3 65 70.8
Aqoxy4G00147 Aquilegia oxysepala HOM05D006973 ORTHO05D008636 2.3e-18 95.9 97 52.6
MBI07_g21782_MAGBIO Magnolia biondii HOM05D006973 ORTHO05D008636 2.3e-18 95.9 99 55.6
MBI07_g41313_MAGBIO Magnolia biondii HOM05D006973 ORTHO05D008636 2.3e-18 95.9 99 55.6
Nn3g20922 Nelumbo nucifera HOM05D006973 ORTHO05D008636 2.3e-18 95.9 80 60.0
Oeu020059.1 Olea europaea HOM05D006973 ORTHO05D008636 3.0e-18 95.5 121 47.9
CANSAT64G0305 Cannabis sativa HOM05D006973 ORTHO05D008636 8.8e-18 94.0 56 80.4
MELO3C014471.2 Cucumis melo HOM05D006973 ORTHO05D008636 1.5e-17 93.2 119 50.4
MSTRG.14293 Avicennia marina HOM05D006973 ORTHO05D008636 1.9e-17 92.8 125 51.2
LjContig00310g0018130 Lotus japonicus HOM05D006973 ORTHO05D008636 4.3e-17 91.7 121 49.6
Lalb_Chr17g0348291 Lupinus albus HOM05D006973 ORTHO05D008636 5.7e-17 91.3 66 63.6
TPR.G12665 Trifolium pratense HOM05D006973 ORTHO05D008636 5.7e-17 91.3 121 47.9
PGR042G1786 Punica granatum HOM05D006973 ORTHO05D008636 2.2e-16 89.4 58 75.9
PGSC0003DMG400017344 Solanum tuberosum HOM05D006973 ORTHO05D008636 3.7e-16 88.6 60 71.7
Ciclev10033026m.g Citrus clementina HOM05D006973 ORTHO05D008636 4.8e-16 88.2 59 71.2
Lalb_Chr04g0248771 Lupinus albus HOM05D006973 ORTHO05D008636 4.8e-16 88.2 124 46.8
Sed0009997 Sechium edule HOM05D006973 ORTHO05D008636 4.8e-16 88.2 116 48.3
Atru.chr6.2093 Acer truncatum HOM05D006973 ORTHO05D008636 1.1e-15 87.0 123 46.3
DCAR_013315 Daucus carota HOM05D006973 ORTHO05D008636 1.4e-15 86.7 97 52.6
Sopen07g029740 Solanum pennellii HOM05D006973 ORTHO05D008636 1.8e-15 86.3 60 66.7
CSS0041461 Camellia sinensis var. sinensis HOM05D006973 ORTHO05D008636 2.4e-15 85.9 65 67.7
BcaC02g07217 Brassica carinata HOM05D006973 ORTHO05D008636 5.3e-15 84.7 101 45.5
A04p32440 Brassica napus HOM05D006973 ORTHO05D008636 5.3e-15 84.7 101 45.5
C04p69950 Brassica napus HOM05D006973 ORTHO05D008636 5.3e-15 84.7 101 45.5
BolC4t28495H Brassica oleracea HOM05D006973 ORTHO05D008636 5.3e-15 84.7 101 45.5
BraA04t18696Z Brassica rapa HOM05D006973 ORTHO05D008636 5.3e-15 84.7 101 45.5
A03p23820 Brassica napus HOM05D006973 ORTHO05D008636 6.9e-15 84.3 95 47.4
BraA03t11597Z Brassica rapa HOM05D006973 ORTHO05D008636 6.9e-15 84.3 95 47.4
BraA05t19306Z Brassica rapa HOM05D006973 ORTHO05D008636 9.1e-15 84.0 86 47.7
BcaB06g29268 Brassica carinata HOM05D006973 ORTHO05D008636 1.2e-14 83.6 95 47.4
BcaB06g29270 Brassica carinata HOM05D006973 ORTHO05D008636 1.2e-14 83.6 95 47.4
Lalb_Chr10g0106711 Lupinus albus HOM05D006973 ORTHO05D008636 1.5e-14 83.2 138 40.6
A05p03160 Brassica napus HOM05D006973 ORTHO05D008636 2.6e-14 82.4 86 47.7
Thhalv10006323m.g Eutrema salsugineum HOM05D006973 ORTHO05D008636 2.6e-14 82.4 88 52.3
Sp5g04010 Schrenkiella parvula HOM05D006973 ORTHO05D008636 2.6e-14 82.4 88 52.3
Solyc07g056360.1 Solanum lycopersicum HOM05D006973 ORTHO05D008636 2.6e-14 82.4 102 49.0
BcaC02g12446 Brassica carinata HOM05D006973 ORTHO05D008636 3.4e-14 82.0 86 46.5
C04p03810 Brassica napus HOM05D006973 ORTHO05D008636 3.4e-14 82.0 86 46.5
BolC4t22017H Brassica oleracea HOM05D006973 ORTHO05D008636 3.4e-14 82.0 86 46.5
Carub.0004s2531 Capsella rubella HOM05D006973 ORTHO05D008636 1.3e-13 80.1 95 45.3
Carub.0005s2563 Capsella rubella HOM05D006973 ORTHO05D008636 2.2e-13 79.3 60 65.0
BcaB01g03419 Brassica carinata HOM05D006973 ORTHO05D008636 5.0e-13 78.2 58 62.1
BcaC02g10032 Brassica carinata HOM05D006973 ORTHO05D008636 6.5e-13 77.8 88 52.3
A04p02340 Brassica napus HOM05D006973 ORTHO05D008636 6.5e-13 77.8 88 52.3
C04p33710 Brassica napus HOM05D006973 ORTHO05D008636 6.5e-13 77.8 88 52.3
BolC4t24939H Brassica oleracea HOM05D006973 ORTHO05D008636 6.5e-13 77.8 88 52.3
Cc05_g09430 Coffea canephora HOM05D006973 ORTHO05D008636 8.5e-13 77.4 115 49.6
AT2G42870 Arabidopsis thaliana HOM05D006973 ORTHO05D008636 1.1e-12 77.0 95 43.2
BraA04t15963Z Brassica rapa HOM05D006973 ORTHO05D008636 1.4e-12 76.6 88 51.1
AT3G58850 Arabidopsis thaliana HOM05D006973 ORTHO05D008636 1.9e-12 76.3 60 61.7
C03p28410 Brassica napus HOM05D006973 ORTHO05D008636 1.9e-12 76.3 95 43.2
BolC3t15210H Brassica oleracea HOM05D006973 ORTHO05D008636 1.9e-12 76.3 95 43.2
CARHR137940 Cardamine hirsuta HOM05D006973 ORTHO05D008636 4.2e-12 75.1 95 47.4
Sp4g25000 Schrenkiella parvula HOM05D006973 ORTHO05D008636 4.2e-12 75.1 95 44.2
BcaB02g08235 Brassica carinata HOM05D006973 ORTHO05D008636 5.5e-12 74.7 92 46.7
Aa31LG1G24640 Aethionema arabicum HOM05D006973 ORTHO05D008636 9.4e-12 73.9 60 53.3
CARHR169260 Cardamine hirsuta HOM05D006973 ORTHO05D008636 9.4e-12 73.9 89 47.2
AL5G40650 Arabidopsis lyrata HOM05D006973 ORTHO05D008636 1.2e-11 73.6 60 58.3
Thhalv10017430m.g Eutrema salsugineum HOM05D006973 ORTHO05D008636 1.2e-11 73.6 110 41.8
CDE04G0049 Ceratophyllum demersum HOM05D006973 ORTHO05D008636 2.1e-11 72.8 95 45.3
AL4G41480 Arabidopsis lyrata HOM05D006973 ORTHO05D008636 2.7e-11 72.4 95 42.1
AL713U10010 Arabidopsis lyrata HOM05D006973 ORTHO05D008636 2.7e-11 72.4 95 42.1
BcaC07g40229 Brassica carinata HOM05D006973 ORTHO05D008636 1.4e-10 70.1 88 45.5
A09p51360 Brassica napus HOM05D006973 ORTHO05D008636 1.8e-10 69.7 88 47.7
arahy.Tifrunner.gnm1.ann1.D7Q1BT Arachis hypogaea HOM05D006973 ORTHO05D008636 2.3e-10 69.3 55 58.2
arahy.Tifrunner.gnm1.ann1.SG1KTY Arachis hypogaea HOM05D006973 ORTHO05D008636 2.3e-10 69.3 55 58.2
MBI10_g03529_MAGBIO Magnolia biondii HOM05D006973 ORTHO05D008636 3.0e-10 68.9 80 48.8
arahy.Tifrunner.gnm1.ann1.9T2B0R Arachis hypogaea HOM05D006973 ORTHO05D008636 3.9e-10 68.6 50 64.0
BraA09t40577Z Brassica rapa HOM05D006973 ORTHO05D008636 3.9e-10 68.6 88 46.6
BcaC07g40299 Brassica carinata HOM05D006973 ORTHO05D008636 1.5e-09 66.6 76 47.4
C08p34140 Brassica napus HOM05D006973 ORTHO05D008636 1.5e-09 66.6 76 47.4
BolC8t51013H Brassica oleracea HOM05D006973 ORTHO05D008636 1.5e-09 66.6 76 47.4
THA.LOC104803237 Tarenaya hassleriana HOM05D006973 ORTHO05D008636 4.4e-09 65.1 58 53.4
HPP92_024628 Vanilla planifolia HOM05D006973 ORTHO05D008636 7.4e-09 64.3 69 47.8
Oeu038038.1 Olea europaea HOM05D006547 ORTHO05D008112 2.2e-08 62.8 88 37.5
Aa31LG10G13410 Aethionema arabicum HOM05D006973 ORTHO05D008636 2.8e-08 62.4 99 43.4
Eucgr.A01970 Eucalyptus grandis HOM05D006973 ORTHO05D008636 3.7e-08 62.0 130 38.5
Zm00001eb159180 Zea mays HOM05D006973 ORTHO05D008636 1.4e-07 60.1 57 50.9
Sabra02G0162800 Salix brachista HOM05D006547 ORTHO05D008112 4.1e-07 58.5 89 38.2
HPP92_017321 Vanilla planifolia HOM05D008443 ORTHO05D010587 9.1e-07 57.4 72 50.0
Duzib251G0664 Durio zibethinus HOM05D006547 ORTHO05D008112 1.5e-06 56.6 53 43.4
Lalb_Chr02g0141791 Lupinus albus HOM05D006547 ORTHO05D008112 1.5e-06 56.6 103 35.0
Potri.002G193300 Populus trichocarpa HOM05D006547 ORTHO05D008112 1.5e-06 56.6 89 33.7
Potri.014G118300 Populus trichocarpa HOM05D006547 ORTHO05D008112 1.5e-06 56.6 88 37.5
Lj5g0010023 Lotus japonicus HOM05D006547 ORTHO05D008112 2.0e-06 56.2 108 30.6
TAR365G0268 Trochodendron aralioides HOM05D006547 ORTHO05D008112 2.0e-06 56.2 54 40.7
Hma1.2p1_0486F.1_g163490 Hydrangea macrophylla HOM05D006547 ORTHO05D008112 2.6e-06 55.8 111 30.6
ATR0693G012 Amborella trichopoda HOM05D006547 ORTHO05D008112 3.4e-06 55.5 100 40.0
Sabra14G0087800 Salix brachista HOM05D006547 ORTHO05D008112 3.4e-06 55.5 88 36.4
Ciclev10022819m.g Citrus clementina HOM05D006547 ORTHO05D008112 4.5e-06 55.1 110 35.5
SalBow3G4324 Salvia bowleyana HOM05D006547 ORTHO05D008112 4.5e-06 55.1 50 48.0
Oeu008480.1 Olea europaea HOM05D006547 ORTHO05D008112 5.9e-06 54.7 93 34.4
Prupe.1G256700 Prunus persica HOM05D008443 ORTHO05D010587 5.9e-06 54.7 58 44.8
SEGI_09603 Sequoiadendron giganteum HOM05D001624 ORTHO05D008636 5.9e-06 54.7 128 41.4
Thecc.02G266700 Theobroma cacao HOM05D006547 ORTHO05D008112 7.7e-06 54.3 81 38.3


User provided reference genes

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