Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv21257 Davidia involucrata HOM05D005183 ORTHO05D045124 3.8e-32 141.0 74 100.0
Dinv19828 Davidia involucrata HOM05D005183 ORTHO05D006684 1.8e-18 95.5 100 60.0
Hma1.2p1_0611F.1_g188660 Hydrangea macrophylla HOM05D005183 ORTHO05D006684 8.4e-16 86.7 100 55.0
Gohir.A01G215950 Gossypium hirsutum HOM05D005183 ORTHO05D006684 1.1e-15 86.3 77 67.5
Manes.08G020900 Manihot esculenta HOM05D005183 ORTHO05D006684 1.4e-15 85.9 99 53.5
Ciclev10028864m.g Citrus clementina HOM05D005183 ORTHO05D006684 2.4e-15 85.1 99 52.5
Nitab4.5_0000132g0170 Nicotiana tabacum HOM05D005183 ORTHO05D006684 2.4e-15 85.1 99 54.5
Nn4g24833 Nelumbo nucifera HOM05D005183 ORTHO05D006684 3.2e-15 84.7 99 55.6
Oeu040539.1 Olea europaea HOM05D005183 ORTHO05D006684 7.1e-15 83.6 99 55.6
vmacro17863 Vaccinium macrocarpon HOM05D005183 ORTHO05D006684 7.1e-15 83.6 100 56.0
Nn2g14627 Nelumbo nucifera HOM05D005183 ORTHO05D006684 1.2e-14 82.8 99 53.5
CSS0041546 Camellia sinensis var. sinensis HOM05D005183 ORTHO05D006684 1.6e-14 82.4 100 55.0
GSVIVG01033782001 Vitis vinifera HOM05D005183 ORTHO05D006684 2.1e-14 82.0 99 52.5
Atru.chr8.1634 Acer truncatum HOM05D005183 ORTHO05D006684 2.7e-14 81.6 99 50.5
Potri.015G088700 Populus trichocarpa HOM05D005183 ORTHO05D006684 2.7e-14 81.6 100 51.0
Hund27408 Selenicereus undatus HOM05D005183 ORTHO05D006684 2.7e-14 81.6 97 53.6
Thecc.05G081000 Theobroma cacao HOM05D005183 ORTHO05D006684 2.7e-14 81.6 99 53.5
TAR371G0095 Trochodendron aralioides HOM05D005183 ORTHO05D045124 2.7e-14 81.6 77 63.6
ClCG10G019350 Citrullus lanatus HOM05D005183 ORTHO05D006684 4.6e-14 80.9 99 51.5
Oeu013577.1 Olea europaea HOM05D005183 ORTHO05D006684 4.6e-14 80.9 99 52.5
Eucgr.A01543 Eucalyptus grandis HOM05D005183 ORTHO05D006684 6.0e-14 80.5 99 52.5
COL.COLO4_29815 Corchorus olitorius HOM05D005183 ORTHO05D006684 7.9e-14 80.1 99 53.5
Gohir.A01G209300 Gossypium hirsutum HOM05D005183 ORTHO05D006684 7.9e-14 80.1 99 53.5
Gohir.D01G198400 Gossypium hirsutum HOM05D005183 ORTHO05D006684 7.9e-14 80.1 99 53.5
Gorai.002G242600 Gossypium raimondii HOM05D005183 ORTHO05D006684 7.9e-14 80.1 99 53.5
Nitab4.5_0002715g0140 Nicotiana tabacum HOM05D005183 ORTHO05D006684 7.9e-14 80.1 99 51.5
Nitab4.5_0005311g0010 Nicotiana tabacum HOM05D005183 ORTHO05D006684 7.9e-14 80.1 99 50.5
vmacro00782 Vaccinium macrocarpon HOM05D005183 ORTHO05D006684 7.9e-14 80.1 78 65.4
Actinidia10400 Actinidia chinensis HOM05D005183 ORTHO05D006684 1.0e-13 79.7 99 54.5
Ca_06436_v3 Cicer arietinum L. HOM05D005183 ORTHO05D006684 1.0e-13 79.7 100 50.0
Duzib128G1222 Durio zibethinus HOM05D005183 ORTHO05D006684 1.0e-13 79.7 99 52.5
SGA_v2.0_scaffold75G24795 Striga asiatica HOM05D005183 ORTHO05D006684 1.0e-13 79.7 98 52.0
Migut.N00918 Erythranthe guttata HOM05D005183 ORTHO05D006684 1.3e-13 79.3 98 51.0
Cpa.g.sc111.25 Carica papaya HOM05D005183 ORTHO05D006684 1.8e-13 79.0 98 51.0
Sabra15G0111600 Salix brachista HOM05D005183 ORTHO05D006684 1.8e-13 79.0 100 49.0
DCAR_010653 Daucus carota HOM05D005183 ORTHO05D006684 2.3e-13 78.6 97 51.5
DCAR_029401 Daucus carota HOM05D005183 ORTHO05D006684 2.3e-13 78.6 97 51.5
Hund17099 Selenicereus undatus HOM05D005183 ORTHO05D006684 2.3e-13 78.6 95 53.7
CiPaw.09G008700 Carya illinoinensis HOM05D005183 ORTHO05D006684 3.0e-13 78.2 98 51.0
Cc09_g05380 Coffea canephora HOM05D005183 ORTHO05D006684 3.9e-13 77.8 99 48.5
PGSC0003DMG400028174 Solanum tuberosum HOM05D005183 ORTHO05D006684 3.9e-13 77.8 101 51.5
AUR62013753 Chenopodium quinoa HOM05D005183 ORTHO05D006684 5.1e-13 77.4 97 52.6
AUR62023398 Chenopodium quinoa HOM05D005183 ORTHO05D006684 5.1e-13 77.4 97 52.6
CAN.G1138.15 Capsicum annuum HOM05D005183 ORTHO05D006684 6.7e-13 77.0 99 50.5
Ca_28565_v3 Cicer arietinum L. HOM05D005183 ORTHO05D006684 8.7e-13 76.6 100 50.0
Migut.J00983 Erythranthe guttata HOM05D005183 ORTHO05D006684 8.7e-13 76.6 98 50.0
Peaxi162Scf00110g02022 Petunia axillaris HOM05D005183 ORTHO05D006684 8.7e-13 76.6 99 50.5
PGR004G1465 Punica granatum HOM05D005183 ORTHO05D006684 1.1e-12 76.3 99 48.5
QL07p040540 Quercus lobata HOM05D005183 ORTHO05D006684 1.1e-12 76.3 99 50.5
MSTRG.5807 Avicennia marina HOM05D005183 ORTHO05D006684 1.9e-12 75.5 97 52.6
MELO3C018272.2 Cucumis melo HOM05D005183 ORTHO05D006684 1.9e-12 75.5 99 49.5
Lj3A998T32 Lonicera japonica HOM05D005183 ORTHO05D006684 1.9e-12 75.5 96 52.1
TPR.G28986 Trifolium pratense HOM05D005183 ORTHO05D006684 3.3e-12 74.7 100 47.0
Solyc10g083600.2 Solanum lycopersicum HOM05D005183 ORTHO05D006684 5.6e-12 73.9 101 49.5
SGA_v2.0_scaffold40G15402 Striga asiatica HOM05D005183 ORTHO05D006684 5.6e-12 73.9 98 49.0
THA.LOC104808666 Tarenaya hassleriana HOM05D005183 ORTHO05D006684 5.6e-12 73.9 99 48.5
EL10Ac1g00750 Beta vulgaris HOM05D005183 ORTHO05D006684 7.4e-12 73.6 96 50.0
CsaV3_3G036840 Cucumis sativus L. HOM05D005183 ORTHO05D006684 7.4e-12 73.6 98 49.0
Psat6g078200 Pisum sativum HOM05D005183 ORTHO05D006684 9.6e-12 73.2 100 46.0
Ah.09g233440 Amaranthus hybridus HOM05D005183 ORTHO05D006684 1.3e-11 72.8 90 50.0
Lalb_Chr02g0155161 Lupinus albus HOM05D005183 ORTHO05D006684 1.6e-11 72.4 100 47.0
Lalb_Chr06g0173361 Lupinus albus HOM05D005183 ORTHO05D006684 1.6e-11 72.4 100 47.0
Sc20g0006050 Simmondsia chinensis HOM05D005183 ORTHO05D006684 1.6e-11 72.4 99 48.5
Aqoxy2G03309 Aquilegia oxysepala HOM05D005183 ORTHO05D006684 2.1e-11 72.0 99 49.5
Cfa016373 Carpinus fangiana HOM05D005183 ORTHO05D006684 2.1e-11 72.0 99 47.5
Cfa008157 Carpinus fangiana HOM05D005183 ORTHO05D006684 2.8e-11 71.6 99 47.5
Sopen10g033080 Solanum pennellii HOM05D005183 ORTHO05D006684 4.8e-11 70.9 101 48.5
Glyma.13G151300 Glycine max HOM05D005183 ORTHO05D006684 8.1e-11 70.1 100 47.0
Lj5g0003294 Lotus japonicus HOM05D005183 ORTHO05D006684 1.4e-10 69.3 98 44.9
TAR371G0749 Trochodendron aralioides HOM05D005183 ORTHO05D006684 1.4e-10 69.3 97 48.5
VMungo0720G1906 Vigna mungo HOM05D005183 ORTHO05D006684 1.4e-10 69.3 101 48.5
Sed0001030 Sechium edule HOM05D005183 ORTHO05D006684 4.0e-10 67.8 84 47.6
Glyma.10G066200 Glycine max HOM05D005183 ORTHO05D006684 5.3e-10 67.4 100 45.0
Phvul.007G223300 Phaseolus vulgaris HOM05D005183 ORTHO05D006684 5.3e-10 67.4 100 45.0
unitig_0.g1556 Utricularia gibba HOM05D005183 ORTHO05D006684 5.3e-10 67.4 98 46.9
HanXRQChr17g0545251 Helianthus annuus HOM05D005183 ORTHO05D006684 9.0e-10 66.6 98 44.9
Medtr1g061160 Medicago truncatula HOM05D005183 ORTHO05D006684 9.0e-10 66.6 100 45.0
Prupe.7G117100 Prunus persica HOM05D005183 ORTHO05D006684 9.0e-10 66.6 104 43.3
TPR.G5686 Trifolium pratense HOM05D005183 ORTHO05D006684 9.0e-10 66.6 98 41.8
Zm00001eb292270 Zea mays HOM05D005183 ORTHO05D006684 1.2e-09 66.2 93 46.2
FvH4_6g17900 Fragaria vesca HOM05D005183 ORTHO05D006684 1.5e-09 65.9 110 42.7
FAN02G4090 Fragaria x ananassa HOM05D005183 ORTHO05D006684 1.5e-09 65.9 110 42.7
FAN14G3711 Fragaria x ananassa HOM05D005183 ORTHO05D006684 1.5e-09 65.9 110 42.7
Zm00001eb255650 Zea mays HOM05D005183 ORTHO05D006684 1.5e-09 65.9 93 46.2
CDE08G0191 Ceratophyllum demersum HOM05D005183 ORTHO05D006684 2.0e-09 65.5 100 46.0
FAN09G1214 Fragaria x ananassa HOM05D005183 ORTHO05D006684 2.0e-09 65.5 110 42.7
MD12G1018000 Malus domestica HOM05D005183 ORTHO05D006684 2.6e-09 65.1 102 42.2
MD14G1016000 Malus domestica HOM05D005183 ORTHO05D006684 2.6e-09 65.1 104 42.3
Carub.0003s2385 Capsella rubella HOM05D005183 ORTHO05D006684 3.4e-09 64.7 84 46.4
HanXRQChr02g0051911 Helianthus annuus HOM05D005183 ORTHO05D006684 3.4e-09 64.7 96 44.8
FAN05G1411 Fragaria x ananassa HOM05D005183 ORTHO05D006684 1.0e-08 63.2 110 40.9
Sp3g21310 Schrenkiella parvula HOM05D005183 ORTHO05D006684 1.3e-08 62.8 99 40.4
Aa31LG8G10050 Aethionema arabicum HOM05D005183 ORTHO05D006684 2.9e-08 61.6 96 43.8
AL3G38300 Arabidopsis lyrata HOM05D005183 ORTHO05D006684 2.9e-08 61.6 99 44.4
A01p31440 Brassica napus HOM05D005183 ORTHO05D006684 2.9e-08 61.6 84 45.2
C01p40070 Brassica napus HOM05D005183 ORTHO05D006684 2.9e-08 61.6 84 45.2
BolC1t03963H Brassica oleracea HOM05D005183 ORTHO05D006684 2.9e-08 61.6 84 45.2
BraA01t03270Z Brassica rapa HOM05D005183 ORTHO05D006684 2.9e-08 61.6 84 45.2
TWI74G1514 Tripterygium wilfordii HOM05D005183 ORTHO05D006684 2.9e-08 61.6 78 48.7
BcaB04g20435 Brassica carinata HOM05D005183 ORTHO05D006684 3.8e-08 61.2 101 42.6
Haze_00122 Corylus avellana HOM05D005183 ORTHO05D006684 3.8e-08 61.2 126 36.5
Oeu037537.3 Olea europaea HOM05D005183 ORTHO05D006684 3.8e-08 61.2 96 45.8
ECA233G2114 Erigeron canadensis HOM05D005183 ORTHO05D006684 4.9e-08 60.8 81 46.9
A07p08780 Brassica napus HOM05D005183 ORTHO05D006684 6.5e-08 60.5 99 40.4
BraA07t28669Z Brassica rapa HOM05D005183 ORTHO05D006684 6.5e-08 60.5 99 40.4
Thhalv10021169m.g Eutrema salsugineum HOM05D005183 ORTHO05D006684 6.5e-08 60.5 100 41.0
BcaC06g35547 Brassica carinata HOM05D005183 ORTHO05D006684 1.1e-07 59.7 99 40.4
BolC7t41857H Brassica oleracea HOM05D005183 ORTHO05D006684 1.1e-07 59.7 99 40.4
Lsat_1_v5_gn_4_35140 Lactuca sativa HOM05D005183 ORTHO05D006684 1.1e-07 59.7 78 48.7
CARHR099550 Cardamine hirsuta HOM05D005183 ORTHO05D006684 1.4e-07 59.3 101 41.6
HPP92_026689 Vanilla planifolia HOM05D005183 ORTHO05D006684 1.4e-07 59.3 100 41.0
C07p13620 Brassica napus HOM05D005183 ORTHO05D006684 1.9e-07 58.9 99 39.4
THA.LOC104804771 Tarenaya hassleriana HOM05D005183 ORTHO05D006684 2.5e-07 58.5 35 80.0
AT3G23620 Arabidopsis thaliana HOM05D005183 ORTHO05D006684 3.2e-07 58.2 99 43.4
BcaB06g26517 Brassica carinata HOM05D005183 ORTHO05D006684 3.2e-07 58.2 99 39.4
Os01g0513800 Oryza sativa ssp. japonica HOM05D005183 ORTHO05D006684 4.2e-07 57.8 94 42.6
RcHm_v2.0_Chr3g0472151 Rosa chinensis HOM05D005183 ORTHO05D006684 7.1e-07 57.0 110 39.1
PSO017G1745 Papaver somniferum HOM05D005183 ORTHO05D006684 1.2e-06 56.2 97 42.3
PSO478G0399 Papaver somniferum HOM05D005183 ORTHO05D006684 1.2e-06 56.2 97 42.3
ATR0559G171 Amborella trichopoda HOM05D005183 ORTHO05D006684 3.5e-06 54.7 95 40.0
FAN05G2784 Fragaria x ananassa HOM05D005183 ORTHO05D006684 4.6e-06 54.3 42 61.9
Ca_11626_v3 Cicer arietinum L. HOM05D005183 ORTHO05D006684 6.0e-06 53.9 57 54.4
SEGI_13997 Sequoiadendron giganteum HOM05D005183 ORTHO05D006684 6.0e-06 53.9 97 42.3
SEGI_31815 Sequoiadendron giganteum HOM05D005183 ORTHO05D006684 6.0e-06 53.9 97 42.3


User provided reference genes

Program Settings