Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv21110 Davidia involucrata HOM05D006955 ORTHO05D008701 8.6e-120 433.7 227 100.0
CSS0004457 Camellia sinensis var. sinensis HOM05D006955 ORTHO05D008701 1.3e-107 393.3 227 89.0
Actinidia14871 Actinidia chinensis HOM05D006955 ORTHO05D008701 2.9e-107 392.1 227 88.5
Actinidia16638 Actinidia chinensis HOM05D006955 ORTHO05D008701 5.4e-106 387.9 227 86.8
Lj3C1017T15 Lonicera japonica HOM05D006955 ORTHO05D008701 1.5e-103 379.8 227 85.5
Rhsim12G0082400 Rhododendron simsii HOM05D006955 ORTHO05D008701 1.6e-102 376.3 237 83.1
vmacro01371 Vaccinium macrocarpon HOM05D006955 ORTHO05D008701 1.4e-101 373.2 267 75.3
Cc11_g10340 Coffea canephora HOM05D006955 ORTHO05D008701 3.4e-100 368.6 225 84.0
GSVIVG01011919001 Vitis vinifera HOM05D006955 ORTHO05D008701 2.7e-97 359.0 227 82.8
Nn3g17799 Nelumbo nucifera HOM05D006955 ORTHO05D008701 6.0e-97 357.8 227 80.6
Gohir.A13G053700 Gossypium hirsutum HOM05D006955 ORTHO05D008701 1.0e-96 357.1 227 80.6
Gohir.D13G071200 Gossypium hirsutum HOM05D006955 ORTHO05D008701 1.0e-96 357.1 227 80.6
Gorai.013G081500 Gossypium raimondii HOM05D006955 ORTHO05D008701 3.9e-96 355.1 227 80.2
Potri.008G118800 Populus trichocarpa HOM05D006955 ORTHO05D008701 4.3e-95 351.7 227 79.3
Glyma.08G260400 Glycine max HOM05D006955 ORTHO05D008701 2.1e-94 349.4 227 78.9
TWI79G1443 Tripterygium wilfordii HOM05D006955 ORTHO05D008701 2.1e-94 349.4 227 78.0
Phvul.002G082400 Phaseolus vulgaris HOM05D006955 ORTHO05D008701 3.6e-94 348.6 227 78.4
RcHm_v2.0_Chr4g0435501 Rosa chinensis HOM05D006955 ORTHO05D008701 6.2e-94 347.8 225 77.3
CANSAT56G1672 Cannabis sativa HOM05D006955 ORTHO05D008701 8.1e-94 347.4 226 77.9
arahy.Tifrunner.gnm1.ann1.0188KY Arachis hypogaea HOM05D006955 ORTHO05D008701 1.4e-93 346.7 225 80.0
arahy.Tifrunner.gnm1.ann1.5TE0FE Arachis hypogaea HOM05D006955 ORTHO05D008701 1.4e-93 346.7 225 80.0
arahy.Tifrunner.gnm1.ann1.FS5FM4 Arachis hypogaea HOM05D006955 ORTHO05D008701 1.8e-93 346.3 225 79.6
TPR.G38250 Trifolium pratense HOM05D006955 ORTHO05D008701 1.8e-93 346.3 227 78.0
Lalb_Chr17g0342031 Lupinus albus HOM05D006955 ORTHO05D008701 4.0e-93 345.1 227 77.5
COL.COLO4_07900 Corchorus olitorius HOM05D006955 ORTHO05D008701 5.3e-93 344.7 227 78.0
Haze_17460 Corylus avellana HOM05D006955 ORTHO05D008701 9.0e-93 344.0 227 78.0
Prupe.1G308500 Prunus persica HOM05D006955 ORTHO05D008701 9.0e-93 344.0 225 76.0
Manes.14G100100 Manihot esculenta HOM05D006955 ORTHO05D008701 1.2e-92 343.6 217 81.6
AUR62002894 Chenopodium quinoa HOM05D006955 ORTHO05D008701 1.5e-92 343.2 227 76.7
Sc11g0003240 Simmondsia chinensis HOM05D006955 ORTHO05D008701 1.5e-92 343.2 227 77.1
Sc11g0003300 Simmondsia chinensis HOM05D006955 ORTHO05D008701 1.5e-92 343.2 227 77.1
DCAR_023669 Daucus carota HOM05D006955 ORTHO05D008701 2.6e-92 342.4 210 83.3
Ca_28012_v3 Cicer arietinum L. HOM05D006955 ORTHO05D008701 3.4e-92 342.0 227 76.7
Nitab4.5_0004895g0100 Nicotiana tabacum HOM05D006955 ORTHO05D008701 3.4e-92 342.0 225 77.3
Peaxi162Scf00382g00128 Petunia axillaris HOM05D006955 ORTHO05D008701 3.4e-92 342.0 227 76.2
Eucgr.G02335 Eucalyptus grandis HOM05D006955 ORTHO05D008701 4.4e-92 341.7 227 77.1
Hund25084 Selenicereus undatus HOM05D006955 ORTHO05D008701 4.4e-92 341.7 227 76.7
Migut.L01079 Erythranthe guttata HOM05D006955 ORTHO05D008701 9.9e-92 340.5 224 78.1
SalBow8G1483 Salvia bowleyana HOM05D006955 ORTHO05D008701 1.7e-91 339.7 227 78.0
Sp1g11840 Schrenkiella parvula HOM05D006955 ORTHO05D008701 1.7e-91 339.7 227 74.0
MELO3C012231.2 Cucumis melo HOM05D006955 ORTHO05D008701 2.2e-91 339.3 224 78.1
PSO017G5158 Papaver somniferum HOM05D006955 ORTHO05D008701 2.2e-91 339.3 227 77.1
Sed0012161 Sechium edule HOM05D006955 ORTHO05D008701 2.2e-91 339.3 227 77.5
Lj2g0004168 Lotus japonicus HOM05D006955 ORTHO05D008701 3.8e-91 338.6 227 77.1
Aqoxy3G00330 Aquilegia oxysepala HOM05D006955 ORTHO05D008701 4.9e-91 338.2 227 75.8
MSTRG.13515 Avicennia marina HOM05D006955 ORTHO05D008701 4.9e-91 338.2 224 77.2
Sabra08G0090200 Salix brachista HOM05D006955 ORTHO05D008701 4.9e-91 338.2 227 74.9
Ah.02g127040 Amaranthus hybridus HOM05D006955 ORTHO05D008701 1.1e-90 337.0 227 75.8
CsaV3_5G034170 Cucumis sativus L. HOM05D006955 ORTHO05D008701 3.2e-90 335.5 227 76.7
Glyma.01G083100 Glycine max HOM05D006955 ORTHO05D008701 3.2e-90 335.5 228 76.8
Oeu033300.1 Olea europaea HOM05D006955 ORTHO05D008701 4.2e-90 335.1 260 70.4
THA.LOC104805251 Tarenaya hassleriana HOM05D006955 ORTHO05D008701 4.2e-90 335.1 227 76.2
ECA233G4186 Erigeron canadensis HOM05D006955 ORTHO05D008701 5.4e-90 334.7 224 74.6
PSO478G1614 Papaver somniferum HOM05D006955 ORTHO05D008701 9.3e-90 334.0 227 75.8
SGA_v2.0_scaffold124G33553 Striga asiatica HOM05D006955 ORTHO05D008701 9.3e-90 334.0 224 75.9
Psat2g093000 Pisum sativum HOM05D006955 ORTHO05D008701 2.1e-89 332.8 227 75.3
Medtr5g055150 Medicago truncatula HOM05D006955 ORTHO05D008701 1.3e-88 330.1 227 74.4
TAR629G1122 Trochodendron aralioides HOM05D006955 ORTHO05D008701 3.0e-88 328.9 250 69.2
VMungo1215G2393 Vigna mungo HOM05D006955 ORTHO05D008701 3.0e-88 328.9 228 75.0
PGR119G2132 Punica granatum HOM05D006955 ORTHO05D008701 8.7e-88 327.4 227 75.3
FAN07G1824 Fragaria x ananassa HOM05D006955 ORTHO05D008701 1.5e-87 326.6 221 74.2
EL10Ac6g14443 Beta vulgaris HOM05D006955 ORTHO05D008701 9.6e-87 323.9 224 72.8
FAN22G1329 Fragaria x ananassa HOM05D006955 ORTHO05D008701 5.3e-85 318.2 242 69.0
Lsat_1_v5_gn_8_38900 Lactuca sativa HOM05D006955 ORTHO05D008701 2.0e-84 316.2 207 76.3
Atru.chr11.1296 Acer truncatum HOM05D006955 ORTHO05D008701 4.5e-84 315.1 227 71.4
Cpa.g.sc1.190 Carica papaya HOM05D006955 ORTHO05D008701 9.9e-84 313.9 224 72.3
TAR622G0049 Trochodendron aralioides HOM05D006955 ORTHO05D008701 1.7e-83 313.2 227 72.7
Nitab4.5_0003823g0050 Nicotiana tabacum HOM05D006955 ORTHO05D008701 3.8e-83 312.0 203 77.8
QL01p043991 Quercus lobata HOM05D006955 ORTHO05D008701 6.4e-83 311.2 225 72.9
FAN12G2251 Fragaria x ananassa HOM05D006955 ORTHO05D008701 1.4e-82 310.1 221 71.5
Duzib251G0691 Durio zibethinus HOM05D006955 ORTHO05D008701 2.4e-82 309.3 227 71.8
Thhalv10008697m.g Eutrema salsugineum HOM05D006955 ORTHO05D008701 3.2e-82 308.9 227 68.7
CARHR013710 Cardamine hirsuta HOM05D006955 ORTHO05D008701 9.3e-82 307.4 227 68.3
ATR0665G168 Amborella trichopoda HOM05D006955 ORTHO05D008701 1.2e-81 307.0 225 69.3
AL1G25090 Arabidopsis lyrata HOM05D006955 ORTHO05D008701 2.1e-81 306.2 227 68.7
FAN12G1265 Fragaria x ananassa HOM05D006955 ORTHO05D008701 3.5e-81 305.4 232 69.4
Ciclev10032679m.g Citrus clementina HOM05D006955 ORTHO05D008701 4.6e-81 305.1 227 70.5
Aa31LG1G1480 Aethionema arabicum HOM05D006955 ORTHO05D008701 7.9e-81 304.3 225 69.3
C05p09970 Brassica napus HOM05D006955 ORTHO05D008701 1.3e-80 303.5 227 67.0
HanXRQChr08g0214231 Helianthus annuus HOM05D006955 ORTHO05D008701 3.0e-80 302.4 227 69.6
MD16G1044800 Malus domestica HOM05D006955 ORTHO05D008701 3.0e-80 302.4 224 70.5
AT1G13330 Arabidopsis thaliana HOM05D006955 ORTHO05D008701 5.1e-80 301.6 227 67.8
Thecc.02G357700 Theobroma cacao HOM05D006955 ORTHO05D008701 1.1e-79 300.4 194 79.4
A06p08430 Brassica napus HOM05D006955 ORTHO05D008701 9.6e-79 297.4 227 66.1
BraA06t24039Z Brassica rapa HOM05D006955 ORTHO05D008701 9.6e-79 297.4 227 66.1
AUR62035251 Chenopodium quinoa HOM05D006955 ORTHO05D008701 9.6e-79 297.4 227 69.2
BcaC05g25057 Brassica carinata HOM05D006955 ORTHO05D008701 4.8e-78 295.0 227 65.6
BcaC05g25064 Brassica carinata HOM05D006955 ORTHO05D008701 4.8e-78 295.0 227 65.6
BolC5t29739H Brassica oleracea HOM05D006955 ORTHO05D008701 4.8e-78 295.0 227 65.6
CiPaw.15G005500 Carya illinoinensis HOM05D006955 ORTHO05D008701 4.8e-78 295.0 195 80.0
BolC5t29750H Brassica oleracea HOM05D006955 ORTHO05D008701 8.1e-78 294.3 210 69.5
ClCG05G022860 Citrullus lanatus HOM05D006955 ORTHO05D008701 8.1e-78 294.3 242 68.2
MD13G1044000 Malus domestica HOM05D006955 ORTHO05D008701 1.1e-77 293.9 224 68.3
Carub.0001s1306 Capsella rubella HOM05D006955 ORTHO05D008701 4.6e-73 278.5 227 63.4
HPP92_011092 Vanilla planifolia HOM05D006955 ORTHO05D008701 2.1e-70 269.6 214 64.0
Zm00001eb216450 Zea mays HOM05D006955 ORTHO05D008701 5.3e-69 265.0 224 61.6
SHI33974 Sapria himalayana HOM05D006955 ORTHO05D008701 9.0e-69 264.2 213 64.3
Solyc05g009560.4 Solanum lycopersicum HOM05D006955 ORTHO05D008701 9.0e-69 264.2 222 62.6
Sopen05g005370 Solanum pennellii HOM05D006955 ORTHO05D008701 9.0e-69 264.2 222 62.6
HPP92_011108 Vanilla planifolia HOM05D006955 ORTHO05D008701 1.2e-68 263.8 207 64.3
CAN.G656.28 Capsicum annuum HOM05D006955 ORTHO05D008701 1.1e-66 257.3 222 61.3
SEGI_38068 Sequoiadendron giganteum HOM05D006955 ORTHO05D008701 3.0e-64 249.2 193 67.4
CDE05G2755 Ceratophyllum demersum HOM05D006955 ORTHO05D008701 1.1e-61 240.7 223 58.3
Mapoly0015s0151 Marchantia polymorpha HOM05D006955 ORTHO05D008701 4.1e-61 238.8 221 53.4
SMO203G0092 Selaginella moellendorffii HOM05D006955 ORTHO05D008701 7.2e-58 228.0 208 54.3
PGSC0003DMG402012965 Solanum tuberosum HOM05D006955 ORTHO05D008701 2.5e-50 203.0 139 71.9
CAN.G706.23 Capsicum annuum HOM05D006955 ORTHO05D008701 5.5e-50 201.8 184 60.9
CBR_g3130 Chara braunii HOM05D006955 ORTHO05D008701 2.6e-47 193.0 214 47.2
Pp3c23_21510 Physcomitrium patens HOM05D006955 ORTHO05D008701 4.5e-44 182.2 200 48.0
CAN.G884.17 Capsicum annuum HOM05D000526 ORTHO05D000956 1.6e-41 173.7 210 50.0
unitig_27.g25247 Utricularia gibba HOM05D006955 ORTHO05D008701 6.8e-32 141.7 94 71.3
Potri.010G127101 Populus trichocarpa HOM05D006955 ORTHO05D008701 3.4e-31 139.4 163 52.1
unitig_27.g25246 Utricularia gibba HOM05D002984 ORTHO05D003561 1.7e-30 137.1 99 74.7
Cre06.g284400 Chlamydomonas reinhardtii HOM05D006955 ORTHO05D008701 1.6e-17 94.0 220 28.6
MCO07G460 Micromonas commoda HOM05D006955 ORTHO05D008701 5.2e-16 89.0 197 28.4
PRCOL_00000208 Prasinoderma coloniale HOM05D006955 ORTHO05D008701 3.9e-11 72.8 214 27.6
Medtr5g055130 Medicago truncatula HOM05D002518 ORTHO05D002630 1.0e-08 64.7 106 44.3
Medtr4g007850 Medicago truncatula HOM05D003710 ORTHO05D258575 6.8e-08 62.0 95 43.2


User provided reference genes

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