Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv20637 Davidia involucrata HOM05D004813 ORTHO05D005889 2.0e-285 985.3 587 100.0
CSS0044871 Camellia sinensis var. sinensis HOM05D004813 ORTHO05D005889 1.6e-189 666.8 562 74.6
CSS0009747 Camellia sinensis var. sinensis HOM05D004813 ORTHO05D005889 8.9e-185 651.0 546 75.5
Cc04_g12130 Coffea canephora HOM05D004813 ORTHO05D005889 3.6e-178 629.0 552 73.9
TAR629G2765 Trochodendron aralioides HOM05D004813 ORTHO05D005889 3.4e-176 622.5 523 73.8
Nn4g22713 Nelumbo nucifera HOM05D004813 ORTHO05D005889 8.3e-175 617.8 549 72.7
Nitab4.5_0000514g0060 Nicotiana tabacum HOM05D004813 ORTHO05D005889 1.0e-164 584.3 551 69.0
MBI16_g39216_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 3.6e-162 575.9 552 66.3
Peaxi162Scf00089g01844 Petunia axillaris HOM05D004813 ORTHO05D005889 3.6e-162 575.9 539 66.2
vmacro16622 Vaccinium macrocarpon HOM05D004813 ORTHO05D005889 3.6e-162 575.9 576 67.4
Oeu016404.1 Olea europaea HOM05D004813 ORTHO05D005889 7.6e-160 568.2 561 68.4
Ciclev10019513m.g Citrus clementina HOM05D004813 ORTHO05D005889 1.7e-159 567.0 565 65.7
MBI16_g37492_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 1.4e-158 563.9 549 67.6
CiPaw.11G024600 Carya illinoinensis HOM05D004813 ORTHO05D005889 4.1e-158 562.4 555 66.7
Cfa019150 Carpinus fangiana HOM05D004813 ORTHO05D005889 9.2e-158 561.2 562 59.1
MBI17_g17505_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 1.2e-157 560.8 559 67.1
Potri.012G082600 Populus trichocarpa HOM05D004813 ORTHO05D005889 4.6e-157 558.9 544 66.7
Eucgr.K02829 Eucalyptus grandis HOM05D004813 ORTHO05D005889 3.3e-155 552.7 583 66.9
MELO3C026213.2 Cucumis melo HOM05D004813 ORTHO05D005889 4.3e-155 552.4 552 64.7
CsaV3_1G000640 Cucumis sativus L. HOM05D004813 ORTHO05D005889 4.3e-155 552.4 554 63.2
DCAR_031351 Daucus carota HOM05D004813 ORTHO05D005889 2.1e-154 550.1 527 65.1
Sc04g0001740 Simmondsia chinensis HOM05D004813 ORTHO05D005889 2.6e-152 543.1 584 64.4
Thecc.03G014500 Theobroma cacao HOM05D004813 ORTHO05D005889 9.9e-152 541.2 570 64.2
QL10p010983 Quercus lobata HOM05D004813 ORTHO05D005889 1.7e-151 540.4 561 66.3
Sabra15G0103000 Salix brachista HOM05D004813 ORTHO05D005889 8.4e-151 538.1 547 66.4
Phvul.003G201700 Phaseolus vulgaris HOM05D004813 ORTHO05D005889 1.9e-150 537.0 555 62.7
Manes.14G064300 Manihot esculenta HOM05D004813 ORTHO05D005889 4.2e-150 535.8 550 63.3
GSVIVG01007723001 Vitis vinifera HOM05D004813 ORTHO05D005889 1.2e-149 534.3 546 58.4
Glyma.05G038800 Glycine max HOM05D004813 ORTHO05D005889 1.6e-149 533.9 555 65.8
PGR044G0958 Punica granatum HOM05D004813 ORTHO05D005889 2.1e-149 533.5 566 64.0
Solyc03g112820.4 Solanum lycopersicum HOM05D004813 ORTHO05D005889 3.5e-149 532.7 549 67.2
Rhsim12G0165800 Rhododendron simsii HOM05D004813 ORTHO05D005889 1.7e-148 530.4 531 59.5
arahy.Tifrunner.gnm1.ann1.9LWV25 Arachis hypogaea HOM05D004813 ORTHO05D005889 2.3e-148 530.0 564 64.0
TWI14G0980 Tripterygium wilfordii HOM05D004813 ORTHO05D005889 2.3e-148 530.0 577 63.4
Sopen03g031900 Solanum pennellii HOM05D004813 ORTHO05D005889 3.0e-148 529.6 544 67.5
PGSC0003DMG400018096 Solanum tuberosum HOM05D004813 ORTHO05D005889 3.9e-148 529.3 546 66.5
arahy.Tifrunner.gnm1.ann1.J26J1M Arachis hypogaea HOM05D004813 ORTHO05D005889 8.7e-148 528.1 565 63.0
Gorai.008G296300 Gossypium raimondii HOM05D004813 ORTHO05D005889 3.3e-147 526.2 545 67.0
Cpa.g.sc76.31 Carica papaya HOM05D004813 ORTHO05D005889 7.3e-147 525.0 559 64.2
Gohir.A12G275100 Gossypium hirsutum HOM05D004813 ORTHO05D005889 3.6e-146 522.7 552 66.3
Haze_07517 Corylus avellana HOM05D004813 ORTHO05D005889 6.2e-146 521.9 593 63.1
PSO832G2178 Papaver somniferum HOM05D004813 ORTHO05D005889 6.2e-146 521.9 548 61.5
Sed0018710 Sechium edule HOM05D004813 ORTHO05D005889 1.4e-145 520.8 564 62.9
CDE05G0644 Ceratophyllum demersum HOM05D004813 ORTHO05D005889 5.3e-145 518.8 579 62.3
TWI23G0210 Tripterygium wilfordii HOM05D004813 ORTHO05D005889 9.0e-145 518.1 586 61.9
Gohir.D12G275800 Gossypium hirsutum HOM05D004813 ORTHO05D005889 2.0e-144 516.9 560 65.2
Glyma.17G088200 Glycine max HOM05D004813 ORTHO05D005889 2.6e-144 516.5 548 64.8
CANSAT80G1068 Cannabis sativa HOM05D004813 ORTHO05D005889 5.8e-144 515.4 552 67.4
COL.COLO4_30069 Corchorus olitorius HOM05D004813 ORTHO05D005889 9.9e-144 514.6 534 62.9
Atru.chr8.1447 Acer truncatum HOM05D004813 ORTHO05D005889 1.7e-143 513.8 553 64.0
Lj9A420T39 Lonicera japonica HOM05D004813 ORTHO05D005889 6.4e-143 511.9 580 56.4
PSO063G0570 Papaver somniferum HOM05D004813 ORTHO05D005889 2.4e-142 510.0 543 60.2
Lsat_1_v5_gn_4_75841 Lactuca sativa HOM05D004813 ORTHO05D005889 3.2e-142 509.6 568 59.0
VMungo1215G0389 Vigna mungo HOM05D004813 ORTHO05D005889 2.7e-141 506.5 546 60.4
Potri.015G078500 Populus trichocarpa HOM05D004813 ORTHO05D005889 6.6e-140 501.9 543 64.1
Psat4g058360 Pisum sativum HOM05D004813 ORTHO05D005889 3.3e-139 499.6 554 55.6
Thhalv10003981m.g Eutrema salsugineum HOM05D004813 ORTHO05D005889 4.3e-139 499.2 552 60.9
Lalb_Chr07g0182801 Lupinus albus HOM05D004813 ORTHO05D005889 1.6e-138 497.3 556 61.5
Prupe.5G171700 Prunus persica HOM05D004813 ORTHO05D005889 1.6e-138 497.3 546 65.4
BcaB02g10019 Brassica carinata HOM05D004813 ORTHO05D005889 2.1e-138 496.9 552 61.2
MD14G1178200 Malus domestica HOM05D004813 ORTHO05D005889 2.1e-138 496.9 538 63.0
SGA_v2.0_scaffold114G31819 Striga asiatica HOM05D004813 ORTHO05D005889 2.1e-138 496.9 614 59.8
Lj4g0001275 Lotus japonicus HOM05D004813 ORTHO05D005889 4.8e-138 495.7 580 60.5
ClCG06G017810 Citrullus lanatus HOM05D004813 ORTHO05D005889 8.1e-138 495.0 607 56.8
Hund02755 Selenicereus undatus HOM05D004813 ORTHO05D005889 1.8e-137 493.8 589 61.1
A07p17440 Brassica napus HOM05D004813 ORTHO05D005889 2.4e-137 493.4 530 62.3
CARHR281210 Cardamine hirsuta HOM05D004813 ORTHO05D005889 4.0e-137 492.7 547 60.5
Aqoxy3G02883 Aquilegia oxysepala HOM05D004813 ORTHO05D005889 5.3e-137 492.3 558 61.6
BolC9t54072H Brassica oleracea HOM05D004813 ORTHO05D005889 9.0e-137 491.5 536 63.6
Carub.0002s0981 Capsella rubella HOM05D004813 ORTHO05D005889 1.2e-136 491.1 546 60.3
MD06G1172400 Malus domestica HOM05D004813 ORTHO05D005889 1.2e-136 491.1 539 63.6
Migut.D01957 Erythranthe guttata HOM05D004813 ORTHO05D005889 9.9e-136 488.0 594 57.7
Sp2g30180 Schrenkiella parvula HOM05D004813 ORTHO05D005889 1.3e-135 487.6 562 58.4
BcaNung05723 Brassica carinata HOM05D004813 ORTHO05D005889 2.2e-135 486.9 552 59.6
Medtr4g105590 Medicago truncatula HOM05D004813 ORTHO05D005889 2.2e-135 486.9 552 60.5
BcaC04g23133 Brassica carinata HOM05D004813 ORTHO05D005889 4.9e-135 485.7 551 61.9
A09p09960 Brassica napus HOM05D004813 ORTHO05D005889 8.4e-135 485.0 534 60.7
C09p11820 Brassica napus HOM05D004813 ORTHO05D005889 1.4e-134 484.2 539 63.1
Carub.0008s2799 Capsella rubella HOM05D004813 ORTHO05D005889 7.1e-134 481.9 556 58.3
HanXRQChr15g0463041 Helianthus annuus HOM05D004813 ORTHO05D005889 9.3e-134 481.5 569 58.3
BraA09t36642Z Brassica rapa HOM05D004813 ORTHO05D005889 1.6e-133 480.7 534 60.1
SalBow6G0518 Salvia bowleyana HOM05D004813 ORTHO05D005889 6.0e-133 478.8 587 59.6
unitig_0.g15 Utricularia gibba HOM05D004813 ORTHO05D005889 5.1e-132 475.7 548 55.8
Aa31LG1G15060 Aethionema arabicum HOM05D004813 ORTHO05D005889 8.7e-132 474.9 594 57.6
ECA232G2493 Erigeron canadensis HOM05D004813 ORTHO05D005889 5.6e-131 472.2 559 55.6
Ca_21934_v3 Cicer arietinum L. HOM05D004813 ORTHO05D005889 1.8e-129 467.2 559 58.0
AL8G44980 Arabidopsis lyrata HOM05D004813 ORTHO05D005889 5.8e-128 462.2 536 60.3
AT5G66540 Arabidopsis thaliana HOM05D004813 ORTHO05D005889 1.3e-127 461.1 541 58.6
RcHm_v2.0_Chr7g0193361 Rosa chinensis HOM05D004813 ORTHO05D005889 2.9e-127 459.9 549 60.3
Atru.chr9.2495 Acer truncatum HOM05D004813 ORTHO05D005889 2.5e-126 456.8 554 59.4
TPR.G37503 Trifolium pratense HOM05D004813 ORTHO05D005889 2.5e-126 456.8 571 56.7
EL10Ac9g21440 Beta vulgaris HOM05D004813 ORTHO05D005889 6.7e-124 448.7 577 58.1
ATR1091G095 Amborella trichopoda HOM05D004813 ORTHO05D005889 1.5e-123 447.6 543 51.9
FAN13G1879 Fragaria x ananassa HOM05D004813 ORTHO05D005889 8.2e-122 441.8 532 60.3
FAN04G1884 Fragaria x ananassa HOM05D004813 ORTHO05D005889 1.4e-121 441.0 529 61.2
Haze_17000 Corylus avellana HOM05D004813 ORTHO05D005889 6.9e-121 438.7 540 55.0
FAN18G4177 Fragaria x ananassa HOM05D004813 ORTHO05D005889 7.6e-120 435.3 531 55.7
Zm00001eb293550 Zea mays HOM05D004813 ORTHO05D005889 3.8e-119 433.0 538 55.6
AUR62010096 Chenopodium quinoa HOM05D004813 ORTHO05D005889 1.4e-118 431.0 531 49.3
FAN18G0441 Fragaria x ananassa HOM05D004813 ORTHO05D005889 1.4e-118 431.0 532 58.6
FAN08G2504 Fragaria x ananassa HOM05D004813 ORTHO05D005889 2.5e-118 430.3 534 58.1
AUR62013092 Chenopodium quinoa HOM05D004813 ORTHO05D005889 7.2e-118 428.7 511 51.5
FvH4_5g05471 Fragaria vesca HOM05D004813 ORTHO05D005889 5.1e-116 422.5 528 57.8
Os11g0137100 Oryza sativa ssp. japonica HOM05D004813 ORTHO05D005889 1.4e-113 414.5 535 57.4
BraA07t29465Z Brassica rapa HOM05D004813 ORTHO05D005889 1.8e-113 414.1 467 59.5
Os12g0133900 Oryza sativa ssp. japonica HOM05D004813 ORTHO05D005889 2.0e-112 410.6 539 56.6
HPP92_018752 Vanilla planifolia HOM05D004813 ORTHO05D005889 6.5e-111 405.6 521 57.2
Ah.01g009190 Amaranthus hybridus HOM05D004813 ORTHO05D005889 2.6e-104 383.6 595 52.3
Nitab4.5_0008678g0020 Nicotiana tabacum HOM05D004813 ORTHO05D005889 7.2e-102 375.6 362 67.7
Actinidia19105 Actinidia chinensis HOM05D004813 ORTHO05D005889 3.9e-100 369.8 366 66.4
Oeu020911.1 Olea europaea HOM05D004813 ORTHO05D005889 2.5e-94 350.5 558 51.3
MD01G1006000 Malus domestica HOM05D004813 ORTHO05D005889 2.2e-90 337.4 357 62.7
Psat4g058280 Pisum sativum HOM05D004813 ORTHO05D005889 3.6e-85 320.1 516 42.6
Pp3c4_31210 Physcomitrium patens HOM05D004813 ORTHO05D005889 6.8e-84 315.8 532 46.6
Mapoly0077s0037 Marchantia polymorpha HOM05D004813 ORTHO05D005889 5.7e-83 312.8 529 45.6
SMO367G0656 Selaginella moellendorffii HOM05D004813 ORTHO05D005889 7.7e-80 302.4 487 47.4
SMO275G0031 Selaginella moellendorffii HOM05D004813 ORTHO05D005889 1.9e-78 297.7 470 43.4
AagrBONN_evm.TU.Sc2ySwM_369.357 Anthoceros agrestis HOM05D004813 ORTHO05D005889 2.9e-71 273.9 558 37.5
CAN.G1166.5 Capsicum annuum HOM05D004813 ORTHO05D005889 6.4e-66 256.1 175 78.3
CAN.G1166.4 Capsicum annuum HOM05D004813 ORTHO05D005889 5.0e-63 246.5 345 56.2
arahy.Tifrunner.gnm1.ann1.J34B41 Arachis hypogaea HOM05D004813 ORTHO05D005889 2.3e-60 237.7 214 64.5
PGR044G0267 Punica granatum HOM05D004813 ORTHO05D005889 1.6e-56 224.9 215 61.9
BolC7t43059H Brassica oleracea HOM05D004813 ORTHO05D005889 2.0e-56 224.6 252 52.8
Actinidia19106 Actinidia chinensis HOM05D004813 ORTHO05D005889 2.5e-54 217.6 126 90.5
CBR_g26354 Chara braunii HOM05D004813 ORTHO05D005889 5.8e-51 206.5 292 44.9
SEGI_37748 Sequoiadendron giganteum HOM05D004813 ORTHO05D005889 8.3e-50 202.6 390 49.2
Cre08.g370601 Chlamydomonas reinhardtii HOM05D004813 ORTHO05D005889 2.7e-48 197.6 269 46.1
C07p25370 Brassica napus HOM05D004813 ORTHO05D005889 1.1e-41 175.6 269 46.1
BcaC06g34713 Brassica carinata HOM05D004813 ORTHO05D005889 3.5e-40 170.6 188 52.1
BcaNung06644 Brassica carinata HOM05D004813 ORTHO05D005889 3.5e-40 170.6 188 52.1
PRCOL_00002680 Prasinoderma coloniale HOM05D004813 ORTHO05D005889 4.3e-38 163.7 236 41.5
MBI07_g10351_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 2.3e-31 141.4 150 55.3
SEGI_16864 Sequoiadendron giganteum HOM05D004813 ORTHO05D005889 1.3e-29 135.6 103 70.9
BcaB02g10018 Brassica carinata HOM05D004813 ORTHO05D005889 5.8e-27 126.7 183 56.3
Haze_20617 Corylus avellana HOM05D004813 ORTHO05D005889 2.9e-26 124.4 152 52.0
MBI14_g23619_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 5.8e-19 100.1 62 80.6
MCO01G452 Micromonas commoda HOM05D004813 ORTHO05D005889 3.8e-18 97.4 292 31.2
Potri.003G194550 Populus trichocarpa HOM05D004813 ORTHO05D005889 9.3e-17 92.8 85 60.0
HanXRQChr11g0336351 Helianthus annuus HOM05D004813 ORTHO05D005889 1.3e-15 89.0 77 58.4
SalBow1G5081 Salvia bowleyana HOM05D004813 ORTHO05D018488 6.7e-15 86.7 73 67.1
Lj3g0016907 Lotus japonicus HOM05D004813 ORTHO05D005889 1.5e-14 85.5 89 56.2
arahy.Tifrunner.gnm1.ann1.YI6NTU Arachis hypogaea HOM05D004813 ORTHO05D005889 1.9e-14 85.1 66 69.7
SEGI_40991 Sequoiadendron giganteum HOM05D004813 ORTHO05D005889 1.9e-14 85.1 79 57.0
MBI05_g41028_MAGBIO Magnolia biondii HOM05D000669 ORTHO05D005889 3.7e-13 80.9 86 57.0
Lj6g0012951 Lotus japonicus HOM05D004813 ORTHO05D005889 7.6e-11 73.2 68 58.8
BcaC04g21797 Brassica carinata HOM05D004813 ORTHO05D005889 1.0e-10 72.8 100 44.0
MBI03_g03787_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 1.6e-08 65.5 37 81.1
MBI14_g41770_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 6.0e-08 63.5 77 50.6
Mapoly0050s0001 Marchantia polymorpha HOM05D004813 ORTHO05D005889 8.7e-07 59.7 67 50.7
Medtr0130s0060 Medicago truncatula HOM05D003167 ORTHO05D003929 3.3e-06 57.8 34 88.2


User provided reference genes

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