Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv20063 Davidia involucrata HOM05D005402 ORTHO05D007036 0.0e+00 1233.8 627 100.0
Dinv13911 Davidia involucrata HOM05D005402 ORTHO05D007036 2.1e-309 1065.1 658 83.1
CSS0005702 Camellia sinensis var. sinensis HOM05D005402 ORTHO05D007036 5.8e-275 950.7 658 74.9
Hma1.2p1_0412F.1_g147300 Hydrangea macrophylla HOM05D005402 ORTHO05D007036 2.4e-273 945.3 652 74.5
GSVIVG01012705001 Vitis vinifera HOM05D005402 ORTHO05D007036 1.9e-262 909.1 658 71.1
Cfa000204 Carpinus fangiana HOM05D005402 ORTHO05D007036 1.9e-257 892.5 659 70.9
vmacro15795 Vaccinium macrocarpon HOM05D005402 ORTHO05D007036 1.9e-257 892.5 659 69.0
Haze_06819 Corylus avellana HOM05D005402 ORTHO05D007036 1.2e-256 889.8 659 70.3
PGSC0003DMG400022060 Solanum tuberosum HOM05D005402 ORTHO05D007036 9.6e-246 853.6 658 67.0
Ciclev10014465m.g Citrus clementina HOM05D005402 ORTHO05D007036 1.3e-245 853.2 658 67.3
Sopen02g011290 Solanum pennellii HOM05D005402 ORTHO05D007036 8.1e-245 850.5 659 66.5
Solyc02g032920.3 Solanum lycopersicum HOM05D005402 ORTHO05D007036 4.5e-243 844.7 658 66.1
Nn1g07183 Nelumbo nucifera HOM05D005402 ORTHO05D007036 2.9e-242 842.0 659 66.9
Prupe.4G224400 Prunus persica HOM05D005402 ORTHO05D007036 1.1e-241 840.1 655 66.9
Oeu040335.1 Olea europaea HOM05D005402 ORTHO05D007036 1.2e-240 836.6 658 66.6
Thecc.06G223300 Theobroma cacao HOM05D005402 ORTHO05D007036 1.2e-240 836.6 660 65.8
Atru.chr10.2252 Acer truncatum HOM05D005402 ORTHO05D007036 4.6e-240 834.7 660 65.5
Duzib235G0987 Durio zibethinus HOM05D005402 ORTHO05D007036 4.6e-240 834.7 659 66.3
CAN.G128.67 Capsicum annuum HOM05D005402 ORTHO05D007036 7.9e-240 833.9 653 65.5
TAR629G0778 Trochodendron aralioides HOM05D005402 ORTHO05D007036 1.1e-238 830.1 659 66.0
Manes.16G005300 Manihot esculenta HOM05D005402 ORTHO05D007036 1.5e-238 829.7 657 65.0
Gohir.A05G171400 Gossypium hirsutum HOM05D005402 ORTHO05D007036 4.3e-238 828.2 659 65.7
HanXRQChr15g0470411 Helianthus annuus HOM05D005402 ORTHO05D007036 1.1e-236 823.5 658 64.6
Gorai.009G179800 Gossypium raimondii HOM05D005402 ORTHO05D007036 2.4e-236 822.4 659 65.4
Gohir.D05G174500 Gossypium hirsutum HOM05D005402 ORTHO05D007036 4.0e-236 821.6 659 64.9
Nitab4.5_0000005g0240 Nicotiana tabacum HOM05D005402 ORTHO05D007036 2.6e-235 818.9 639 66.7
Nitab4.5_0004712g0050 Nicotiana tabacum HOM05D005402 ORTHO05D007036 4.5e-235 818.1 628 66.9
QL05p072729 Quercus lobata HOM05D005402 ORTHO05D007036 5.8e-235 817.8 658 66.0
MSTRG.7199 Avicennia marina HOM05D005402 ORTHO05D007036 6.5e-234 814.3 657 63.9
DCAR_028193 Daucus carota HOM05D000001 ORTHO05D007036 1.6e-232 809.7 681 62.6
RcHm_v2.0_Chr7g0223851 Rosa chinensis HOM05D005402 ORTHO05D007036 7.9e-232 807.4 661 64.4
COL.COLO4_31795 Corchorus olitorius HOM05D005402 ORTHO05D007036 6.7e-231 804.3 660 63.9
Glyma.17G012200 Glycine max HOM05D005402 ORTHO05D007036 8.7e-231 803.9 658 63.4
Lsat_1_v5_gn_7_16460 Lactuca sativa HOM05D005402 ORTHO05D007036 3.3e-230 802.0 660 64.4
Eucgr.D01347 Eucalyptus grandis HOM05D005402 ORTHO05D007036 7.4e-230 800.8 658 62.8
Cc09_g01510 Coffea canephora HOM05D005402 ORTHO05D007036 9.7e-230 800.4 651 64.4
Peaxi162Scf00307g01422 Petunia axillaris HOM05D005402 ORTHO05D007036 3.7e-229 798.5 659 63.4
FAN18G2172 Fragaria x ananassa HOM05D005402 ORTHO05D007036 1.4e-228 796.6 661 63.2
Hund23456 Selenicereus undatus HOM05D005402 ORTHO05D007036 4.1e-228 795.0 655 62.3
Migut.M01334 Erythranthe guttata HOM05D005402 ORTHO05D007036 6.9e-228 794.3 652 62.4
FAN08G3587 Fragaria x ananassa HOM05D005402 ORTHO05D007036 9.0e-228 793.9 661 62.9
Ca_21074_v3 Cicer arietinum L. HOM05D005402 ORTHO05D007036 7.7e-227 790.8 661 62.5
PGR004G0080 Punica granatum HOM05D005402 ORTHO05D007036 1.3e-226 790.0 653 63.6
Glyma.07G261900 Glycine max HOM05D005402 ORTHO05D007036 6.5e-226 787.7 661 62.5
Peaxi162Scf00394g00020 Petunia axillaris HOM05D005402 ORTHO05D007036 8.5e-226 787.3 655 64.0
Potri.007G040000 Populus trichocarpa HOM05D005402 ORTHO05D007036 5.5e-225 784.6 660 62.1
FAN13G2175 Fragaria x ananassa HOM05D005402 ORTHO05D007036 2.7e-224 782.3 661 61.7
ClCG01G021860 Citrullus lanatus HOM05D005402 ORTHO05D007036 1.0e-223 780.4 658 62.2
Phvul.003G080200 Phaseolus vulgaris HOM05D005402 ORTHO05D007036 1.0e-223 780.4 659 61.3
TPR.G36999 Trifolium pratense HOM05D005402 ORTHO05D007036 1.4e-223 780.0 659 62.4
FAN04G1555 Fragaria x ananassa HOM05D005402 ORTHO05D007036 1.8e-223 779.6 661 62.2
PSO541G1465 Papaver somniferum HOM05D005402 ORTHO05D007036 3.9e-223 778.5 657 62.1
arahy.Tifrunner.gnm1.ann1.I0ZCH2 Arachis hypogaea HOM05D005402 ORTHO05D007036 5.1e-223 778.1 657 61.6
arahy.Tifrunner.gnm1.ann1.T40CTJ Arachis hypogaea HOM05D005402 ORTHO05D007036 2.5e-222 775.8 657 61.5
Sabra07G0036200 Salix brachista HOM05D005402 ORTHO05D007036 3.3e-222 775.4 667 61.5
VMungo1215G1509 Vigna mungo HOM05D005402 ORTHO05D007036 5.7e-222 774.6 660 61.8
FvH4_5g29980 Fragaria vesca HOM05D005402 ORTHO05D007036 7.4e-222 774.2 661 62.2
PSO675G3880 Papaver somniferum HOM05D005402 ORTHO05D007036 7.4e-222 774.2 657 61.8
Medtr4g132340 Medicago truncatula HOM05D005402 ORTHO05D007036 6.3e-221 771.2 657 60.7
Sed0000438 Sechium edule HOM05D005402 ORTHO05D007036 4.1e-220 768.5 658 61.2
ECA236G3723 Erigeron canadensis HOM05D005402 ORTHO05D000490 6.9e-220 767.7 653 62.5
CANSAT56G4097 Cannabis sativa HOM05D005402 ORTHO05D007036 2.9e-218 762.3 659 61.3
MELO3C007401.2 Cucumis melo HOM05D005402 ORTHO05D007036 2.9e-218 762.3 658 61.1
CsaV3_6G048920 Cucumis sativus L. HOM05D005402 ORTHO05D007036 4.2e-217 758.4 658 60.9
MBI02_g15380_MAGBIO Magnolia biondii HOM05D005402 ORTHO05D007036 8.8e-215 750.7 672 58.8
SalBow8G4792 Salvia bowleyana HOM05D005402 ORTHO05D007036 1.1e-214 750.4 654 59.3
Lj4g0015196 Lotus japonicus HOM05D005402 ORTHO05D007036 3.7e-213 745.3 658 60.6
Lalb_Chr07g0177141 Lupinus albus HOM05D005402 ORTHO05D007036 2.0e-211 739.6 658 59.1
THA.LOC104806309 Tarenaya hassleriana HOM05D005402 ORTHO05D007036 7.7e-211 737.6 657 59.4
AUR62015290 Chenopodium quinoa HOM05D005402 ORTHO05D007036 8.5e-210 734.2 653 58.2
Psat4g006080 Pisum sativum HOM05D005402 ORTHO05D007036 6.1e-208 728.0 668 58.2
Sp7g26160 Schrenkiella parvula HOM05D005402 ORTHO05D007036 6.1e-208 728.0 660 57.4
Actinidia11859 Actinidia chinensis HOM05D005402 ORTHO05D007036 1.8e-207 726.5 658 60.9
Aa31LG6G3970 Aethionema arabicum HOM05D005402 ORTHO05D007036 5.7e-206 721.5 652 58.0
Aqoxy1G03121 Aquilegia oxysepala HOM05D005402 ORTHO05D007036 1.7e-205 719.9 656 57.0
Lj2C266G9 Lonicera japonica HOM05D005402 ORTHO05D007036 2.8e-205 719.2 653 61.1
C08p10670 Brassica napus HOM05D005402 ORTHO05D007036 6.3e-205 718.0 652 58.3
Carub.0007s1256 Capsella rubella HOM05D005402 ORTHO05D007036 6.3e-205 718.0 664 57.2
BolC8t48740H Brassica oleracea HOM05D005402 ORTHO05D007036 8.2e-205 717.6 652 58.4
AL7G24400 Arabidopsis lyrata HOM05D005402 ORTHO05D007036 1.1e-204 717.2 656 58.4
TWI63G0339 Tripterygium wilfordii HOM05D005402 ORTHO05D007036 1.1e-204 717.2 652 57.8
BcaC07g38316 Brassica carinata HOM05D005402 ORTHO05D007036 1.4e-204 716.8 652 58.4
Ah.10g032740 Amaranthus hybridus HOM05D005402 ORTHO05D007036 1.0e-202 710.7 651 55.6
CiPaw.09G093500 Carya illinoinensis HOM05D005402 ORTHO05D007036 2.7e-200 702.6 509 71.7
A08p20200 Brassica napus HOM05D005402 ORTHO05D007036 3.6e-200 702.2 655 57.1
BraA08t33979Z Brassica rapa HOM05D005402 ORTHO05D007036 3.6e-200 702.2 655 57.1
CARHR235910 Cardamine hirsuta HOM05D005402 ORTHO05D007036 8.0e-200 701.0 650 57.7
AUR62032734 Chenopodium quinoa HOM05D005402 ORTHO05D007036 1.5e-198 696.8 664 55.9
BcaB03g12558 Brassica carinata HOM05D005402 ORTHO05D007036 2.4e-196 689.5 655 56.8
MD15G1066800 Malus domestica HOM05D005402 ORTHO05D007036 2.4e-196 689.5 666 56.2
Hma1.2p1_0412F.1_g147310 Hydrangea macrophylla HOM05D005402 ORTHO05D007036 5.0e-194 681.8 491 71.5
Thhalv10024642m.g Eutrema salsugineum HOM05D005402 ORTHO05D007036 2.8e-189 666.0 649 55.5
MD08G1079900 Malus domestica HOM05D005402 ORTHO05D007036 9.1e-188 661.0 656 55.2
AT4G28200 Arabidopsis thaliana HOM05D005402 ORTHO05D007036 1.9e-185 653.3 656 54.9
unitig_748.g7549 Utricularia gibba HOM05D005402 ORTHO05D007036 2.1e-184 649.8 650 55.4
CDE05G1008 Ceratophyllum demersum HOM05D005402 ORTHO05D007036 4.7e-184 648.7 633 53.7
Os02g0103900 Oryza sativa ssp. japonica HOM05D005402 ORTHO05D007036 9.8e-182 641.0 687 50.5
ATR0743G102 Amborella trichopoda HOM05D005402 ORTHO05D007036 2.6e-174 616.3 658 51.1
HPP92_012414 Vanilla planifolia HOM05D005402 ORTHO05D007036 6.0e-171 605.1 657 48.7
BcaB03g12559 Brassica carinata HOM05D005402 ORTHO05D007036 5.3e-143 512.3 421 63.4
Sc05g0009280 Simmondsia chinensis HOM05D005402 ORTHO05D007036 4.9e-141 505.8 374 69.3
EL10Ac3g06734 Beta vulgaris HOM05D005402 ORTHO05D007036 6.2e-136 488.8 361 66.8
SGA_v2.0_scaffold7G03813 Striga asiatica HOM05D005402 ORTHO05D007036 5.3e-135 485.7 480 52.1
Zm00001eb118290 Zea mays HOM05D005402 ORTHO05D007036 2.2e-133 480.3 526 49.6
SGA_v2.0_scaffold4G01907 Striga asiatica HOM05D005402 ORTHO05D007036 4.6e-123 446.0 657 42.5
Mapoly0165s0012 Marchantia polymorpha HOM05D005402 ORTHO05D007036 1.3e-117 427.9 665 38.8
SMO203G0067 Selaginella moellendorffii HOM05D005402 ORTHO05D007036 2.4e-103 380.6 648 36.9
Pp3c5_4450 Physcomitrium patens HOM05D005402 ORTHO05D007036 2.2e-96 357.5 662 35.8
AagrBONN_evm.TU.Sc2ySwM_228.882 Anthoceros agrestis HOM05D005402 ORTHO05D007036 2.1e-91 340.9 508 40.9
SEGI_35740 Sequoiadendron giganteum HOM05D005402 ORTHO05D007036 1.8e-87 327.8 364 47.8
CAN.G23.24 Capsicum annuum HOM05D005402 ORTHO05D007036 2.7e-78 297.4 272 59.2
Cpa.g.sc1199.5 Carica papaya HOM05D005402 ORTHO05D007036 5.2e-74 283.1 272 54.8
Sc05g0009290 Simmondsia chinensis HOM05D005402 ORTHO05D007036 1.2e-73 282.0 285 52.6
CBR_g31384 Chara braunii HOM05D005402 ORTHO05D007036 1.9e-68 264.6 759 28.6
EL10Ac3g06733 Beta vulgaris HOM05D005402 ORTHO05D007036 3.1e-58 230.7 348 40.5
RcHm_v2.0_Chr6g0291751 Rosa chinensis HOM05D005402 ORTHO05D007036 2.9e-56 224.2 226 56.2
Cre10.g442000 Chlamydomonas reinhardtii HOM05D005402 ORTHO05D007036 7.0e-55 219.5 712 26.7
RcHm_v2.0_Chr7g0223961 Rosa chinensis HOM05D005402 ORTHO05D007036 6.8e-50 203.0 264 47.0
RcHm_v2.0_Chr7g0223951 Rosa chinensis HOM05D005402 ORTHO05D007036 1.2e-35 155.6 127 64.6
SHI32968 Sapria himalayana HOM05D005402 ORTHO05D007036 1.3e-32 145.6 242 37.6
RcHm_v2.0_Chr7g0223941 Rosa chinensis HOM05D005402 ORTHO05D007036 1.2e-30 139.0 80 76.2
Zm00001eb129750 Zea mays HOM05D005402 ORTHO05D007036 1.2e-25 122.5 182 40.1
AagrBONN_evm.TU.Sc2ySwM_228.888 Anthoceros agrestis HOM05D005402 ORTHO05D007036 4.6e-22 110.5 101 48.5
MCO01G148 Micromonas commoda HOM05D005402 ORTHO05D007036 1.1e-20 105.9 209 30.6
Hma1.2p1_0660F.1_g197590 Hydrangea macrophylla HOM05D005402 ORTHO05D007036 3.3e-20 104.4 65 78.5
Cfa022130 Carpinus fangiana HOM05D005402 ORTHO05D007036 5.6e-20 103.6 209 33.5
AagrBONN_evm.TU.Sc2ySwM_228.894 Anthoceros agrestis HOM05D005402 ORTHO05D007036 1.1e-18 99.4 86 47.7
CARHR228840 Cardamine hirsuta HOM05D005402 ORTHO05D007036 5.3e-18 97.1 65 75.4
AagrBONN_evm.TU.Sc2ySwM_228.885 Anthoceros agrestis HOM05D005402 ORTHO05D007036 2.9e-16 91.3 82 51.2
Zm00001eb238100 Zea mays HOM05D005402 ORTHO05D007036 1.8e-13 82.0 95 45.3
A01p19620 Brassica napus HOM05D005402 ORTHO05D007036 8.7e-13 79.7 97 49.5
SalBow7G0548 Salvia bowleyana HOM05D005402 ORTHO05D037500 8.1e-11 73.2 72 54.2
Dinv21729 Davidia involucrata HOM05D005402 ORTHO05D007036 1.5e-09 68.9 71 59.2
SalBow1G2367 Salvia bowleyana HOM05D005402 ORTHO05D037500 2.6e-09 68.2 64 57.8
SalBow5G5666 Salvia bowleyana HOM05D005402 ORTHO05D037500 4.5e-09 67.4 49 67.3
RcHm_v2.0_Chr6g0291761 Rosa chinensis HOM05D005402 ORTHO05D007036 7.6e-09 66.6 76 46.1
CDE05G1743 Ceratophyllum demersum HOM05D005402 ORTHO05D007036 7.9e-06 56.6 47 55.3


User provided reference genes

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