Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv19828 Davidia involucrata HOM05D005183 ORTHO05D006684 1.7e-174 615.9 315 100.0
Hma1.2p1_0611F.1_g188660 Hydrangea macrophylla HOM05D005183 ORTHO05D006684 2.2e-153 545.8 315 87.3
CSS0041546 Camellia sinensis var. sinensis HOM05D005183 ORTHO05D006684 7.7e-151 537.3 315 86.3
Oeu040539.1 Olea europaea HOM05D005183 ORTHO05D006684 3.8e-150 535.0 314 84.4
DCAR_010653 Daucus carota HOM05D005183 ORTHO05D006684 6.1e-148 527.7 312 83.7
DCAR_029401 Daucus carota HOM05D005183 ORTHO05D006684 1.4e-147 526.6 312 83.3
Nn4g24833 Nelumbo nucifera HOM05D005183 ORTHO05D006684 1.4e-147 526.6 314 83.1
Actinidia10400 Actinidia chinensis HOM05D005183 ORTHO05D006684 1.5e-146 523.1 314 83.1
GSVIVG01033782001 Vitis vinifera HOM05D005183 ORTHO05D006684 7.4e-146 520.8 314 82.2
Nn2g14627 Nelumbo nucifera HOM05D005183 ORTHO05D006684 1.4e-144 516.5 314 80.6
Oeu013577.1 Olea europaea HOM05D005183 ORTHO05D006684 2.4e-144 515.8 314 81.8
HanXRQChr02g0051911 Helianthus annuus HOM05D005183 ORTHO05D006684 2.6e-143 512.3 311 83.3
Peaxi162Scf00110g02022 Petunia axillaris HOM05D005183 ORTHO05D006684 4.5e-143 511.5 314 80.9
PGSC0003DMG400028174 Solanum tuberosum HOM05D005183 ORTHO05D006684 1.3e-142 510.0 316 80.4
MSTRG.5807 Avicennia marina HOM05D005183 ORTHO05D006684 1.7e-142 509.6 311 81.7
TAR371G0749 Trochodendron aralioides HOM05D005183 ORTHO05D006684 2.9e-142 508.8 312 81.1
Lsat_1_v5_gn_4_35140 Lactuca sativa HOM05D005183 ORTHO05D006684 1.9e-141 506.1 293 85.3
Solyc10g083600.2 Solanum lycopersicum HOM05D005183 ORTHO05D006684 1.9e-141 506.1 316 79.7
vmacro17863 Vaccinium macrocarpon HOM05D005183 ORTHO05D006684 2.5e-141 505.8 342 76.3
Lalb_Chr06g0173361 Lupinus albus HOM05D005183 ORTHO05D006684 1.2e-140 503.4 315 79.0
Sopen10g033080 Solanum pennellii HOM05D005183 ORTHO05D006684 1.6e-140 503.1 316 79.4
CAN.G1138.15 Capsicum annuum HOM05D005183 ORTHO05D006684 3.6e-140 501.9 314 79.9
Cc09_g05380 Coffea canephora HOM05D005183 ORTHO05D006684 6.1e-140 501.1 314 77.4
Nitab4.5_0002715g0140 Nicotiana tabacum HOM05D005183 ORTHO05D006684 6.1e-140 501.1 312 79.8
HanXRQChr17g0545251 Helianthus annuus HOM05D005183 ORTHO05D006684 7.9e-140 500.7 303 83.8
Lj3A998T32 Lonicera japonica HOM05D005183 ORTHO05D006684 7.9e-140 500.7 311 81.0
Eucgr.A01543 Eucalyptus grandis HOM05D005183 ORTHO05D006684 1.0e-139 500.4 314 79.0
Hund27408 Selenicereus undatus HOM05D005183 ORTHO05D006684 1.4e-139 500.0 312 79.2
Aqoxy2G03309 Aquilegia oxysepala HOM05D005183 ORTHO05D006684 2.3e-139 499.2 314 78.0
ClCG10G019350 Citrullus lanatus HOM05D005183 ORTHO05D006684 2.3e-139 499.2 314 77.1
Hund17099 Selenicereus undatus HOM05D005183 ORTHO05D006684 3.0e-139 498.8 311 80.1
Sc20g0006050 Simmondsia chinensis HOM05D005183 ORTHO05D006684 3.9e-139 498.4 313 79.6
Migut.J00983 Erythranthe guttata HOM05D005183 ORTHO05D006684 5.2e-139 498.0 313 77.3
SGA_v2.0_scaffold40G15402 Striga asiatica HOM05D005183 ORTHO05D006684 5.2e-139 498.0 313 77.6
Ca_06436_v3 Cicer arietinum L. HOM05D005183 ORTHO05D006684 6.7e-139 497.7 315 76.5
Migut.N00918 Erythranthe guttata HOM05D005183 ORTHO05D006684 1.1e-138 496.9 313 77.0
Ciclev10028864m.g Citrus clementina HOM05D005183 ORTHO05D006684 7.4e-138 494.2 314 77.4
Ah.09g233440 Amaranthus hybridus HOM05D005183 ORTHO05D006684 1.3e-137 493.4 305 77.7
Gorai.002G242600 Gossypium raimondii HOM05D005183 ORTHO05D006684 1.3e-137 493.4 314 77.7
PGR004G1465 Punica granatum HOM05D005183 ORTHO05D006684 1.3e-137 493.4 314 77.4
Manes.08G020900 Manihot esculenta HOM05D005183 ORTHO05D006684 2.2e-137 492.7 314 76.4
Psat6g078200 Pisum sativum HOM05D005183 ORTHO05D006684 2.2e-137 492.7 315 74.3
SGA_v2.0_scaffold75G24795 Striga asiatica HOM05D005183 ORTHO05D006684 2.8e-137 492.3 313 76.4
Thecc.05G081000 Theobroma cacao HOM05D005183 ORTHO05D006684 2.8e-137 492.3 314 78.0
MELO3C018272.2 Cucumis melo HOM05D005183 ORTHO05D006684 3.7e-137 491.9 314 75.8
Gohir.D01G198400 Gossypium hirsutum HOM05D005183 ORTHO05D006684 4.8e-137 491.5 314 77.4
Gohir.A01G209300 Gossypium hirsutum HOM05D005183 ORTHO05D006684 8.2e-137 490.7 314 77.1
Glyma.10G066200 Glycine max HOM05D005183 ORTHO05D006684 1.4e-136 490.0 315 76.5
Glyma.13G151300 Glycine max HOM05D005183 ORTHO05D006684 1.8e-136 489.6 315 76.5
unitig_0.g1556 Utricularia gibba HOM05D005183 ORTHO05D006684 2.4e-136 489.2 313 76.0
CiPaw.09G008700 Carya illinoinensis HOM05D005183 ORTHO05D006684 4.1e-136 488.4 313 76.7
Potri.015G088700 Populus trichocarpa HOM05D005183 ORTHO05D006684 4.1e-136 488.4 315 75.9
VMungo0720G1906 Vigna mungo HOM05D005183 ORTHO05D006684 4.1e-136 488.4 316 76.6
QL07p040540 Quercus lobata HOM05D005183 ORTHO05D006684 5.3e-136 488.0 314 76.4
CsaV3_3G036840 Cucumis sativus L. HOM05D005183 ORTHO05D006684 7.0e-136 487.6 313 75.4
Phvul.007G223300 Phaseolus vulgaris HOM05D005183 ORTHO05D006684 7.0e-136 487.6 315 75.6
Cpa.g.sc111.25 Carica papaya HOM05D005183 ORTHO05D006684 9.1e-136 487.3 313 78.0
COL.COLO4_29815 Corchorus olitorius HOM05D005183 ORTHO05D006684 9.1e-136 487.3 314 77.1
Duzib128G1222 Durio zibethinus HOM05D005183 ORTHO05D006684 9.1e-136 487.3 314 76.4
Lj5g0003294 Lotus japonicus HOM05D005183 ORTHO05D006684 2.6e-135 485.7 313 74.8
TPR.G28986 Trifolium pratense HOM05D005183 ORTHO05D006684 5.9e-135 484.6 315 73.7
AUR62023398 Chenopodium quinoa HOM05D005183 ORTHO05D006684 7.7e-135 484.2 312 76.3
AUR62013753 Chenopodium quinoa HOM05D005183 ORTHO05D006684 1.0e-134 483.8 312 76.0
Sed0001030 Sechium edule HOM05D005183 ORTHO05D006684 2.2e-134 482.6 299 76.6
EL10Ac1g00750 Beta vulgaris HOM05D005183 ORTHO05D006684 2.9e-134 482.3 311 76.8
ECA233G2114 Erigeron canadensis HOM05D005183 ORTHO05D006684 1.1e-133 480.3 286 82.5
Nitab4.5_0005311g0010 Nicotiana tabacum HOM05D005183 ORTHO05D006684 3.2e-133 478.8 292 80.5
THA.LOC104808666 Tarenaya hassleriana HOM05D005183 ORTHO05D006684 5.5e-133 478.0 314 73.9
Cfa016373 Carpinus fangiana HOM05D005183 ORTHO05D006684 2.1e-132 476.1 314 73.9
Cfa008157 Carpinus fangiana HOM05D005183 ORTHO05D006684 2.7e-132 475.7 314 74.5
Haze_00122 Corylus avellana HOM05D005183 ORTHO05D006684 1.4e-131 473.4 341 69.8
vmacro00782 Vaccinium macrocarpon HOM05D005183 ORTHO05D006684 5.2e-131 471.5 315 77.5
CDE08G0191 Ceratophyllum demersum HOM05D005183 ORTHO05D006684 9.7e-130 467.2 315 74.3
PSO478G0399 Papaver somniferum HOM05D005183 ORTHO05D006684 1.1e-128 463.8 312 74.0
PSO017G1745 Papaver somniferum HOM05D005183 ORTHO05D006684 4.1e-128 461.8 312 74.0
TWI74G1514 Tripterygium wilfordii HOM05D005183 ORTHO05D006684 5.3e-128 461.5 293 75.1
Aa31LG8G10050 Aethionema arabicum HOM05D005183 ORTHO05D006684 7.0e-128 461.1 311 72.3
Medtr1g061160 Medicago truncatula HOM05D005183 ORTHO05D006684 2.7e-127 459.1 313 70.3
Sabra15G0111600 Salix brachista HOM05D005183 ORTHO05D006684 1.0e-126 457.2 315 70.8
FvH4_6g17900 Fragaria vesca HOM05D005183 ORTHO05D006684 5.0e-126 454.9 327 68.8
FAN02G4090 Fragaria x ananassa HOM05D005183 ORTHO05D006684 5.0e-126 454.9 327 68.8
FAN14G3711 Fragaria x ananassa HOM05D005183 ORTHO05D006684 5.0e-126 454.9 327 68.8
Zm00001eb255650 Zea mays HOM05D005183 ORTHO05D006684 5.0e-126 454.9 307 72.6
BcaC06g35547 Brassica carinata HOM05D005183 ORTHO05D006684 8.5e-126 454.1 314 69.1
BolC7t41857H Brassica oleracea HOM05D005183 ORTHO05D006684 8.5e-126 454.1 314 69.1
Prupe.7G117100 Prunus persica HOM05D005183 ORTHO05D006684 1.5e-125 453.4 320 69.7
HPP92_026689 Vanilla planifolia HOM05D005183 ORTHO05D006684 1.5e-125 453.4 318 72.0
ATR0559G171 Amborella trichopoda HOM05D005183 ORTHO05D006684 3.2e-125 452.2 313 73.5
Zm00001eb292270 Zea mays HOM05D005183 ORTHO05D006684 3.2e-125 452.2 307 72.3
FAN05G1411 Fragaria x ananassa HOM05D005183 ORTHO05D006684 7.2e-125 451.1 327 67.9
A07p08780 Brassica napus HOM05D005183 ORTHO05D006684 1.2e-124 450.3 314 68.8
C07p13620 Brassica napus HOM05D005183 ORTHO05D006684 1.2e-124 450.3 314 68.8
BraA07t28669Z Brassica rapa HOM05D005183 ORTHO05D006684 2.7e-124 449.1 314 68.5
TPR.G5686 Trifolium pratense HOM05D005183 ORTHO05D006684 3.6e-124 448.7 290 72.4
MD12G1018000 Malus domestica HOM05D005183 ORTHO05D006684 1.4e-123 446.8 317 68.1
BcaB04g20435 Brassica carinata HOM05D005183 ORTHO05D006684 1.8e-123 446.4 314 68.8
FAN09G1214 Fragaria x ananassa HOM05D005183 ORTHO05D006684 1.8e-123 446.4 337 66.8
Os01g0513800 Oryza sativa ssp. japonica HOM05D005183 ORTHO05D006684 2.3e-123 446.0 308 71.4
BcaB06g26517 Brassica carinata HOM05D005183 ORTHO05D006684 4.0e-123 445.3 314 67.5
Carub.0003s2385 Capsella rubella HOM05D005183 ORTHO05D006684 6.8e-123 444.5 299 70.2
Thhalv10021169m.g Eutrema salsugineum HOM05D005183 ORTHO05D006684 2.0e-122 443.0 315 67.6
RcHm_v2.0_Chr3g0472151 Rosa chinensis HOM05D005183 ORTHO05D006684 2.6e-122 442.6 327 67.0
BolC1t03963H Brassica oleracea HOM05D005183 ORTHO05D006684 3.4e-122 442.2 299 70.9
HPP92_017999 Vanilla planifolia HOM05D005183 ORTHO05D006684 4.4e-122 441.8 291 74.2
C01p40070 Brassica napus HOM05D005183 ORTHO05D006684 7.5e-122 441.0 299 70.6
A01p31440 Brassica napus HOM05D005183 ORTHO05D006684 9.8e-122 440.7 299 70.2
BraA01t03270Z Brassica rapa HOM05D005183 ORTHO05D006684 9.8e-122 440.7 299 70.2
AL3G38300 Arabidopsis lyrata HOM05D005183 ORTHO05D006684 2.2e-121 439.5 314 68.5
AT3G23620 Arabidopsis thaliana HOM05D005183 ORTHO05D006684 2.2e-121 439.5 314 68.2
Sp3g21310 Schrenkiella parvula HOM05D005183 ORTHO05D006684 3.7e-121 438.7 314 67.5
CARHR099550 Cardamine hirsuta HOM05D005183 ORTHO05D006684 2.0e-119 433.0 316 67.7
SEGI_13997 Sequoiadendron giganteum HOM05D005183 ORTHO05D006684 7.7e-119 431.0 314 68.8
SEGI_31815 Sequoiadendron giganteum HOM05D005183 ORTHO05D006684 1.7e-118 429.9 314 68.8
Atru.chr8.1634 Acer truncatum HOM05D005183 ORTHO05D006684 1.2e-116 423.7 269 73.6
MD14G1016000 Malus domestica HOM05D005183 ORTHO05D006684 1.2e-116 423.7 300 68.7
THA.LOC104804771 Tarenaya hassleriana HOM05D005183 ORTHO05D006684 1.3e-113 413.7 257 77.8
Rhsim11G0063800 Rhododendron simsii HOM05D005183 ORTHO05D006684 5.0e-110 401.7 315 68.3
FAN05G2784 Fragaria x ananassa HOM05D005183 ORTHO05D006684 1.1e-109 400.6 246 76.4
Gohir.A01G215950 Gossypium hirsutum HOM05D005183 ORTHO05D006684 2.5e-109 399.4 327 64.5
Actinidia31290 Actinidia chinensis HOM05D005183 ORTHO05D006684 1.2e-108 397.1 314 68.2
Pp3c4_19370 Physcomitrium patens HOM05D005183 ORTHO05D006684 1.9e-101 373.2 305 60.3
Nitab4.5_0000132g0170 Nicotiana tabacum HOM05D005183 ORTHO05D006684 3.4e-98 362.5 238 76.5
Lalb_Chr02g0155161 Lupinus albus HOM05D005183 ORTHO05D006684 7.0e-96 354.8 235 73.6
SMO367G0957 Selaginella moellendorffii HOM05D005183 ORTHO05D006684 8.6e-94 347.8 298 57.0
Ca_28565_v3 Cicer arietinum L. HOM05D005183 ORTHO05D006684 2.1e-92 343.2 224 74.1
Mapoly0098s0050 Marchantia polymorpha HOM05D005183 ORTHO05D006684 2.1e-92 343.2 299 57.5
Pp3c26_6490 Physcomitrium patens HOM05D005183 ORTHO05D006684 2.6e-90 336.3 314 54.5
Haze_19538 Corylus avellana HOM05D005183 ORTHO05D006684 6.6e-86 321.6 276 61.6
AagrBONN_evm.TU.Sc2ySwM_344.5577 Anthoceros agrestis HOM05D005183 ORTHO05D006684 2.5e-85 319.7 307 52.8
CBR_g32692 Chara braunii HOM05D012618 ORTHO05D006684 6.6e-78 295.0 294 53.4
Cre03.g197000 Chlamydomonas reinhardtii HOM05D005183 ORTHO05D006684 8.1e-76 288.1 303 48.5
Oeu037537.3 Olea europaea HOM05D005183 ORTHO05D006684 1.2e-74 284.3 230 66.5
MCO10G188 Micromonas commoda HOM05D005183 ORTHO05D006684 1.8e-67 260.4 294 47.6
HanXRQChr08g0223931 Helianthus annuus HOM05D005183 ORTHO05D006684 1.9e-53 213.8 185 62.7
PRCOL_00004600 Prasinoderma coloniale HOM05D005183 ORTHO05D006684 2.2e-49 200.3 293 39.6
Ca_11626_v3 Cicer arietinum L. HOM05D005183 ORTHO05D006684 1.9e-37 160.6 104 72.1
Lalb_Chr02g0155171 Lupinus albus HOM05D005183 ORTHO05D006684 6.9e-35 152.1 93 79.6
Os05g0506900 Oryza sativa ssp. japonica HOM05D005183 ORTHO05D006684 1.4e-30 137.9 94 69.1
MSTRG.19230 Avicennia marina HOM05D005183 ORTHO05D026969 8.8e-30 135.2 90 75.6
MELO3C028534.2 Cucumis melo HOM05D005183 ORTHO05D006684 5.9e-26 122.5 79 74.7
C04p39730 Brassica napus HOM05D005183 ORTHO05D026969 8.8e-22 108.6 90 64.4
BolC4t25545H Brassica oleracea HOM05D005183 ORTHO05D026969 8.8e-22 108.6 90 64.4
TAR371G0095 Trochodendron aralioides HOM05D005183 ORTHO05D045124 2.8e-20 103.6 115 52.2
Dinv21257 Davidia involucrata HOM05D005183 ORTHO05D045124 4.5e-18 96.3 100 60.0
BolC6t35803H Brassica oleracea HOM05D005183 ORTHO05D026969 3.2e-16 90.1 90 54.4


User provided reference genes

Program Settings