Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv19708 Davidia involucrata HOM05D004412 ORTHO05D005316 6.3e-151 537.3 258 100.0
TAR362G0097 Trochodendron aralioides HOM05D004412 ORTHO05D005316 2.0e-125 452.6 257 82.5
Thecc.01G297900 Theobroma cacao HOM05D004412 ORTHO05D005316 1.0e-124 450.3 256 82.4
vmacro02463 Vaccinium macrocarpon HOM05D004412 ORTHO05D005316 1.1e-123 446.8 257 83.7
TWI14G0137 Tripterygium wilfordii HOM05D004412 ORTHO05D005316 1.5e-123 446.4 256 81.2
Hma1.2p1_0491F.1_g164430 Hydrangea macrophylla HOM05D004412 ORTHO05D005316 7.2e-123 444.1 257 82.9
Duzib138G0322 Durio zibethinus HOM05D004412 ORTHO05D005316 8.0e-122 440.7 256 81.6
Lj2C1191G7 Lonicera japonica HOM05D004412 ORTHO05D005316 1.0e-121 440.3 277 77.6
GSVIVG01027984001 Vitis vinifera HOM05D004412 ORTHO05D005316 1.8e-121 439.5 262 81.3
TWI59G0713 Tripterygium wilfordii HOM05D004412 ORTHO05D005316 6.8e-121 437.6 256 80.5
Prupe.8G259100 Prunus persica HOM05D004412 ORTHO05D005316 2.0e-120 436.0 256 81.2
Haze_04907 Corylus avellana HOM05D004412 ORTHO05D005316 2.6e-120 435.6 256 80.9
TAR633G0484 Trochodendron aralioides HOM05D004412 ORTHO05D005316 2.6e-120 435.6 255 81.2
Duzib211G0511 Durio zibethinus HOM05D004412 ORTHO05D005316 4.4e-120 434.9 258 81.0
Ciclev10021279m.g Citrus clementina HOM05D004412 ORTHO05D005316 1.3e-119 433.3 267 76.8
Atru.chr5.1172 Acer truncatum HOM05D004412 ORTHO05D005316 1.7e-119 433.0 256 78.5
Cfa005939 Carpinus fangiana HOM05D004412 ORTHO05D005316 1.7e-119 433.0 256 80.9
Manes.05G063600 Manihot esculenta HOM05D004412 ORTHO05D005316 2.2e-119 432.6 256 79.3
MD03G1285900 Malus domestica HOM05D004412 ORTHO05D005316 4.9e-119 431.4 257 80.2
COL.COLO4_23368 Corchorus olitorius HOM05D004412 ORTHO05D005316 3.1e-118 428.7 256 78.5
Rhsim13G0011700 Rhododendron simsii HOM05D004412 ORTHO05D005316 3.1e-118 428.7 255 81.2
FvH4_2g25500 Fragaria vesca HOM05D004412 ORTHO05D005316 4.1e-118 428.3 258 79.8
RcHm_v2.0_Chr6g0293711 Rosa chinensis HOM05D004412 ORTHO05D005316 7.0e-118 427.6 258 79.1
MD11G1305700 Malus domestica HOM05D004412 ORTHO05D005316 3.5e-117 425.2 257 78.2
Potri.002G205800 Populus trichocarpa HOM05D004412 ORTHO05D005316 7.7e-117 424.1 256 79.3
Gohir.A08G042700 Gossypium hirsutum HOM05D004412 ORTHO05D005316 3.8e-116 421.8 256 78.1
FAN24G2667 Fragaria x ananassa HOM05D004412 ORTHO05D005316 8.6e-116 420.6 259 78.8
PGR119G0650 Punica granatum HOM05D004412 ORTHO05D005316 8.6e-116 420.6 256 75.4
Gohir.D08G052500 Gossypium hirsutum HOM05D004412 ORTHO05D005316 2.5e-115 419.1 256 77.7
Gohir.D12G135400 Gossypium hirsutum HOM05D004412 ORTHO05D005316 5.5e-115 417.9 256 78.1
CANSAT25G2200 Cannabis sativa HOM05D004412 ORTHO05D005316 7.2e-115 417.5 258 76.4
CANSAT25G3274 Cannabis sativa HOM05D004412 ORTHO05D005316 9.5e-115 417.2 258 76.4
Gorai.004G052600 Gossypium raimondii HOM05D004412 ORTHO05D005316 2.8e-114 415.6 256 77.3
THA.LOC104825974 Tarenaya hassleriana HOM05D004412 ORTHO05D005316 2.8e-114 415.6 256 76.6
Gorai.008G146400 Gossypium raimondii HOM05D004412 ORTHO05D005316 3.6e-114 415.2 256 77.7
CsaV3_7G029140 Cucumis sativus L. HOM05D004412 ORTHO05D005316 4.7e-114 414.8 262 76.7
QL12p027258 Quercus lobata HOM05D004412 ORTHO05D005316 1.0e-113 413.7 256 77.0
Potri.014G130900 Populus trichocarpa HOM05D004412 ORTHO05D005316 3.0e-113 412.1 255 76.1
DCAR_002821 Daucus carota HOM05D004412 ORTHO05D005316 6.8e-113 411.0 256 76.2
Oeu032104.1 Olea europaea HOM05D004412 ORTHO05D005316 8.9e-113 410.6 262 76.7
DCAR_005799 Daucus carota HOM05D004412 ORTHO05D005316 2.0e-112 409.5 256 77.3
Migut.D00201 Erythranthe guttata HOM05D004412 ORTHO05D005316 4.4e-112 408.3 256 75.8
Glyma.03G213500 Glycine max HOM05D004412 ORTHO05D005316 3.7e-111 405.2 258 75.2
BcaB03g15756 Brassica carinata HOM05D004412 ORTHO05D005316 8.3e-111 404.1 256 74.6
Eucgr.H01156 Eucalyptus grandis HOM05D004412 ORTHO05D005316 8.3e-111 404.1 266 74.4
Medtr7g108680 Medicago truncatula HOM05D004412 ORTHO05D005316 1.4e-110 403.3 259 73.4
PSO302G0109 Papaver somniferum HOM05D004412 ORTHO05D005316 1.8e-110 402.9 257 73.9
CAN.G339.23 Capsicum annuum HOM05D004412 ORTHO05D005316 7.0e-110 401.0 262 73.3
Thhalv10008492m.g Eutrema salsugineum HOM05D004412 ORTHO05D005316 1.2e-109 400.2 256 73.8
AL1G12300 Arabidopsis lyrata HOM05D004412 ORTHO05D005316 1.6e-109 399.8 256 73.8
PSO210G7114 Papaver somniferum HOM05D004412 ORTHO05D005316 4.6e-109 398.3 257 73.2
Psat0s3188g0040 Pisum sativum HOM05D004412 ORTHO05D005316 4.6e-109 398.3 266 72.2
arahy.Tifrunner.gnm1.ann1.E95WBF Arachis hypogaea HOM05D004412 ORTHO05D005316 1.3e-108 396.7 257 74.3
Carub.0001s0201 Capsella rubella HOM05D004412 ORTHO05D005316 1.3e-108 396.7 256 73.8
Sabra14G0097400 Salix brachista HOM05D004412 ORTHO05D005316 1.3e-108 396.7 291 66.7
Phvul.001G206100 Phaseolus vulgaris HOM05D004412 ORTHO05D005316 1.7e-108 396.4 258 74.0
Hund18137 Selenicereus undatus HOM05D004412 ORTHO05D005316 2.3e-108 396.0 252 73.8
Sp1g01880 Schrenkiella parvula HOM05D004412 ORTHO05D005316 3.9e-108 395.2 256 73.0
TPR.G9643 Trifolium pratense HOM05D004412 ORTHO05D005316 3.9e-108 395.2 254 72.0
Glyma.19G210300 Glycine max HOM05D004412 ORTHO05D005316 6.6e-108 394.4 273 71.1
ATR0693G457 Amborella trichopoda HOM05D004412 ORTHO05D005316 8.6e-108 394.0 255 74.5
A10p01550 Brassica napus HOM05D000147 ORTHO05D001254 8.6e-108 394.0 255 72.9
Carub.0007s3652 Capsella rubella HOM05D004412 ORTHO05D005316 1.1e-107 393.7 256 73.4
Ca_09149_v3 Cicer arietinum L. HOM05D004412 ORTHO05D005316 1.1e-107 393.7 265 71.7
AT1G02880 Arabidopsis thaliana HOM05D004412 ORTHO05D005316 1.5e-107 393.3 256 74.2
arahy.Tifrunner.gnm1.ann1.K6REY5 Arachis hypogaea HOM05D004412 ORTHO05D005316 1.5e-107 393.3 257 73.9
CDE05G1992 Ceratophyllum demersum HOM05D004412 ORTHO05D005316 1.9e-107 392.9 256 73.8
Lalb_Chr18g0047081 Lupinus albus HOM05D004412 ORTHO05D005316 1.9e-107 392.9 265 71.3
PSO782G2310 Papaver somniferum HOM05D004412 ORTHO05D005316 1.9e-107 392.9 258 71.7
BraA10t42430Z Brassica rapa HOM05D000147 ORTHO05D001254 5.6e-107 391.3 254 73.2
Lj1g0006783 Lotus japonicus HOM05D004412 ORTHO05D005316 1.2e-106 390.2 267 69.3
CDE11G0241 Ceratophyllum demersum HOM05D004412 ORTHO05D005316 1.6e-106 389.8 256 72.7
BcaC05g24629 Brassica carinata HOM05D004412 ORTHO05D005316 2.8e-106 389.0 255 73.3
C05p01550 Brassica napus HOM05D000147 ORTHO05D001254 2.8e-106 389.0 255 73.3
Peaxi162Scf00001g04911 Petunia axillaris HOM05D004412 ORTHO05D005316 4.7e-106 388.3 262 70.2
MSTRG.18165 Avicennia marina HOM05D004412 ORTHO05D005316 1.8e-105 386.3 256 74.6
ECA247G0114 Erigeron canadensis HOM05D004412 ORTHO05D005316 2.3e-105 386.0 260 71.2
Sopen09g029800 Solanum pennellii HOM05D004412 ORTHO05D005316 2.3e-105 386.0 256 71.5
HPP92_013717 Vanilla planifolia HOM05D004412 ORTHO05D005316 2.3e-105 386.0 256 70.7
AT2G44750 Arabidopsis thaliana HOM05D004412 ORTHO05D005316 3.1e-105 385.6 256 72.3
BcaC07g36986 Brassica carinata HOM05D004412 ORTHO05D005316 4.0e-105 385.2 256 72.3
BcaC07g36988 Brassica carinata HOM05D004412 ORTHO05D005316 4.0e-105 385.2 256 72.3
BolC5t28933H Brassica oleracea HOM05D004412 ORTHO05D005316 5.2e-105 384.8 258 72.5
BcaB03g13500 Brassica carinata HOM05D004412 ORTHO05D005316 6.8e-105 384.4 256 71.9
PGSC0003DMG401011372 Solanum tuberosum HOM05D004412 ORTHO05D005316 6.8e-105 384.4 256 70.7
Solyc09g074970.3 Solanum lycopersicum HOM05D004412 ORTHO05D005316 1.2e-104 383.6 258 71.3
C08p00300 Brassica napus HOM05D004412 ORTHO05D005316 1.5e-104 383.3 256 71.9
arahy.Tifrunner.gnm1.ann1.V4DRNI Arachis hypogaea HOM05D004412 ORTHO05D005316 2.0e-104 382.9 254 71.3
CSS0010827 Camellia sinensis var. sinensis HOM05D004412 ORTHO05D005316 2.6e-104 382.5 237 78.5
Cc04_g10720 Coffea canephora HOM05D004412 ORTHO05D005316 2.6e-104 382.5 262 71.0
A08p37550 Brassica napus HOM05D004412 ORTHO05D005316 4.4e-104 381.7 256 71.9
arahy.Tifrunner.gnm1.ann1.TC9I43 Arachis hypogaea HOM05D004412 ORTHO05D005316 5.8e-104 381.3 254 70.9
MBI19_g12143_MAGBIO Magnolia biondii HOM05D004412 ORTHO05D005316 5.8e-104 381.3 317 60.6
Lsat_1_v5_gn_9_901 Lactuca sativa HOM05D004412 ORTHO05D005316 3.7e-103 378.6 257 71.2
BolC8t46831H Brassica oleracea HOM05D004412 ORTHO05D005316 6.4e-103 377.9 259 71.0
Manes.01G217400 Manihot esculenta HOM05D004412 ORTHO05D005316 1.1e-102 377.1 216 80.1
SGA_v2.0_scaffold2G01402 Striga asiatica HOM05D002199 ORTHO05D007829 1.4e-102 376.7 256 72.3
Sc05g0004150 Simmondsia chinensis HOM05D004412 ORTHO05D005316 2.4e-102 375.9 255 67.8
Aa31LG1G9690 Aethionema arabicum HOM05D004412 ORTHO05D005316 9.2e-102 374.0 257 70.4
HanXRQChr10g0284561 Helianthus annuus HOM05D004412 ORTHO05D005316 2.7e-101 372.5 258 68.6
EL10Ac2g03462 Beta vulgaris HOM05D004412 ORTHO05D005316 1.0e-100 370.5 269 65.4
HanXRQChr15g0465781 Helianthus annuus HOM05D004412 ORTHO05D005316 1.7e-100 369.8 254 69.7
SGA_v2.0_scaffold1G00376 Striga asiatica HOM05D004412 ORTHO05D005316 2.3e-100 369.4 256 69.9
PSO832G3509 Papaver somniferum HOM05D004412 ORTHO05D005316 4.3e-99 365.2 257 67.7
AUR62008659 Chenopodium quinoa HOM05D004412 ORTHO05D005316 7.3e-99 364.4 256 67.2
AUR62033109 Chenopodium quinoa HOM05D000147 ORTHO05D001254 9.5e-99 364.0 256 67.2
ClCG09G005980 Citrullus lanatus HOM05D004412 ORTHO05D005316 6.2e-98 361.3 211 80.1
Aqoxy5G00729 Aquilegia oxysepala HOM05D004412 ORTHO05D005316 8.9e-97 357.5 211 79.6
Zm00001eb142350 Zea mays HOM05D004412 ORTHO05D005316 9.8e-96 354.0 256 66.4
Nn4g25831 Nelumbo nucifera HOM05D004412 ORTHO05D005316 2.2e-95 352.8 212 75.9
QL12p026683 Quercus lobata HOM05D004412 ORTHO05D005316 2.1e-93 346.3 236 71.6
CiPaw.07G106900 Carya illinoinensis HOM05D004412 ORTHO05D005316 4.6e-93 345.1 194 85.1
BraA08t35652Z Brassica rapa HOM05D004412 ORTHO05D005316 1.0e-92 344.0 260 67.3
Os01g0356500 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 3.9e-92 342.0 257 63.4
Os05g0367400 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 1.1e-91 340.5 258 64.0
Zm00001eb131550 Zea mays HOM05D004412 ORTHO05D005316 2.0e-88 329.7 271 59.4
SalBow3G3296 Salvia bowleyana HOM05D002199 ORTHO05D007829 5.8e-88 328.2 212 72.2
Duzib211G0323 Durio zibethinus HOM05D004412 ORTHO05D005316 9.9e-88 327.4 194 79.4
MELO3C016014.2 Cucumis melo HOM05D004412 ORTHO05D005316 1.7e-87 326.6 191 82.2
Hund05414 Selenicereus undatus HOM05D004412 ORTHO05D005316 6.4e-87 324.7 211 70.6
Dinv33040 Davidia involucrata HOM05D004412 ORTHO05D005316 2.4e-86 322.8 172 90.1
CARHR002230 Cardamine hirsuta HOM05D004412 ORTHO05D005316 1.6e-85 320.1 256 63.7
Actinidia32228 Actinidia chinensis HOM05D004412 ORTHO05D005316 2.7e-85 319.3 204 74.5
Sed0017881 Sechium edule HOM05D004412 ORTHO05D005316 2.7e-85 319.3 191 77.0
Gohir.A12G131600 Gossypium hirsutum HOM05D004412 ORTHO05D005316 1.5e-83 313.5 194 76.3
Medtr8g058563 Medicago truncatula HOM05D004412 ORTHO05D005316 2.8e-82 309.3 180 80.0
Zm00001eb285500 Zea mays HOM05D004412 ORTHO05D005316 1.5e-80 303.5 243 61.3
Pp3c4_27720 Physcomitrium patens HOM05D004412 ORTHO05D005316 2.9e-79 299.3 231 61.9
Sabra02G0153500 Salix brachista HOM05D004412 ORTHO05D005316 7.1e-78 294.7 310 52.6
Pp3c26_15150 Physcomitrium patens HOM05D004412 ORTHO05D005316 1.0e-76 290.8 230 60.4
PGR119G0381 Punica granatum HOM05D004412 ORTHO05D005316 1.0e-76 290.8 227 62.6
AagrBONN_evm.TU.Sc2ySwM_362.2756 Anthoceros agrestis HOM05D004412 ORTHO05D005316 7.3e-75 284.6 253 56.1
Nitab4.5_0005515g0010 Nicotiana tabacum HOM05D004412 ORTHO05D005316 3.1e-73 279.3 360 46.1
unitig_0.g656 Utricularia gibba HOM05D004412 ORTHO05D005316 8.7e-68 261.2 182 68.7
Mapoly0113s0040 Marchantia polymorpha HOM05D004412 ORTHO05D005316 4.3e-67 258.8 259 50.6
Nitab4.5_0002469g0010 Nicotiana tabacum HOM05D004412 ORTHO05D005316 9.0e-65 251.1 272 51.1
SEGI_10498 Sequoiadendron giganteum HOM05D004412 ORTHO05D005316 8.7e-60 234.6 155 69.7
SHI29035 Sapria himalayana HOM05D004412 ORTHO05D005316 3.1e-57 226.1 209 56.0
SMO119G0015 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 4.2e-54 215.7 231 48.9
Carub.0033s0005 Capsella rubella HOM05D004412 ORTHO05D005316 5.1e-52 208.8 134 73.9
SMO304G0134 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 2.5e-51 206.5 179 55.9
Nitab4.5_0001756g0180 Nicotiana tabacum HOM05D004412 ORTHO05D005316 2.8e-50 203.0 124 73.4
CBR_g34735 Chara braunii HOM05D004412 ORTHO05D000002 3.4e-48 196.1 201 49.8
Nitab4.5_0000619g0170 Nicotiana tabacum HOM05D004412 ORTHO05D005316 7.6e-48 194.9 126 69.8
Lj1g0003703 Lotus japonicus HOM05D004412 ORTHO05D005316 6.1e-45 185.3 147 59.9
MCO04G072 Micromonas commoda HOM05D004412 ORTHO05D005316 1.2e-40 171.0 275 34.5
Nitab4.5_0001756g0260 Nicotiana tabacum HOM05D004412 ORTHO05D005316 3.2e-38 162.9 103 75.7
Cre01.g040050 Chlamydomonas reinhardtii HOM05D004412 ORTHO05D005316 1.4e-36 157.5 309 32.7
Cc01_g20710 Coffea canephora HOM05D004412 ORTHO05D005316 1.1e-35 154.5 96 74.0
PRCOL_00001679 Prasinoderma coloniale HOM05D004412 ORTHO05D005316 4.1e-33 146.0 247 36.0
Nitab4.5_0001756g0250 Nicotiana tabacum HOM05D004412 ORTHO05D005316 6.9e-33 145.2 126 54.0
MD11G1034700 Malus domestica HOM05D004412 ORTHO05D005316 7.7e-32 141.7 171 52.0
SMO304G0108 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 6.5e-31 138.7 193 43.0
SMO304G0017 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 7.9e-29 131.7 165 45.5
SEGI_14482 Sequoiadendron giganteum HOM05D004412 ORTHO05D005316 8.8e-28 128.3 98 63.3
SHI29034 Sapria himalayana HOM05D000105 ORTHO05D000023 1.3e-23 114.4 78 65.4
MD02G1044100 Malus domestica HOM05D004412 ORTHO05D005316 6.1e-21 105.5 53 96.2
MD06G1023300 Malus domestica HOM05D004412 ORTHO05D005316 6.1e-21 105.5 53 96.2
SMO304G0077 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 9.7e-19 98.2 119 46.2
FAN16G1537 Fragaria x ananassa HOM05D004412 ORTHO05D005316 1.4e-17 94.4 58 69.0
BcaC05g24583 Brassica carinata HOM05D004412 ORTHO05D005316 1.6e-16 90.9 55 78.2
Os01g0931400 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 2.7e-16 90.1 80 58.8
CBR_g34733 Chara braunii HOM05D004412 ORTHO05D005316 2.2e-10 70.5 63 57.1
BcaB01g01260 Brassica carinata HOM05D004412 ORTHO05D093464 2.4e-09 67.0 51 62.7
AL4G43830 Arabidopsis lyrata HOM05D004412 ORTHO05D005316 4.1e-09 66.2 36 88.9
MD02G1044000 Malus domestica HOM05D004412 ORTHO05D005316 2.2e-07 60.5 44 59.1
MD06G1023200 Malus domestica HOM05D004412 ORTHO05D005316 2.2e-07 60.5 44 59.1
Duzib133G1297 Durio zibethinus HOM05D004412 ORTHO05D005316 1.5e-06 57.8 34 73.5
Nn1g04358 Nelumbo nucifera HOM05D004412 ORTHO05D005316 4.2e-06 56.2 40 57.5


User provided reference genes

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