Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv19351 Davidia involucrata HOM05D003431 ORTHO05D005152 7.8e-42 173.3 85 100.0
Eucgr.I02710 Eucalyptus grandis HOM05D003431 ORTHO05D005152 5.1e-33 144.1 84 85.7
CSS0006665 Camellia sinensis var. sinensis HOM05D003431 ORTHO05D005152 1.9e-32 142.1 84 83.3
Dinv24261 Davidia involucrata HOM05D003431 ORTHO05D005152 2.5e-32 141.7 84 84.5
GSVIVG01023018001 Vitis vinifera HOM05D003431 ORTHO05D005152 2.5e-32 141.7 84 83.3
CDE12G0598 Ceratophyllum demersum HOM05D003431 ORTHO05D005152 4.3e-32 141.0 84 85.7
Atru.chr6.1030 Acer truncatum HOM05D003431 ORTHO05D005152 7.4e-32 140.2 84 81.0
Atru.chr6.1079 Acer truncatum HOM05D003431 ORTHO05D005152 7.4e-32 140.2 84 81.0
Gohir.D01G167700 Gossypium hirsutum HOM05D003431 ORTHO05D005152 7.4e-32 140.2 84 83.3
Manes.10G132200 Manihot esculenta HOM05D003431 ORTHO05D005152 7.4e-32 140.2 84 83.3
TAR633G0411 Trochodendron aralioides HOM05D003431 ORTHO05D005152 7.4e-32 140.2 84 83.3
MSTRG.16533 Avicennia marina HOM05D003431 ORTHO05D005152 9.6e-32 139.8 84 83.3
Migut.B00667 Erythranthe guttata HOM05D003431 ORTHO05D005152 9.6e-32 139.8 84 82.1
Potri.011G156300 Populus trichocarpa HOM05D003431 ORTHO05D005152 9.6e-32 139.8 84 81.0
Duzib248G1379 Durio zibethinus HOM05D003431 ORTHO05D005152 1.3e-31 139.4 82 84.1
Hma1.2p1_0557F.1_g178330 Hydrangea macrophylla HOM05D003431 ORTHO05D005152 1.3e-31 139.4 84 82.1
Hma1.2p1_2850F.1_g329406 Hydrangea macrophylla HOM05D003431 ORTHO05D005152 1.3e-31 139.4 84 82.1
TAR636G0765 Trochodendron aralioides HOM05D003431 ORTHO05D005152 1.3e-31 139.4 84 83.3
Duzib132G0664 Durio zibethinus HOM05D003431 ORTHO05D005152 1.6e-31 139.0 84 82.1
Hma1.2p1_0557F.1_g178340 Hydrangea macrophylla HOM05D003431 ORTHO05D005152 1.6e-31 139.0 83 81.9
SGA_v2.0_scaffold1G00326 Striga asiatica HOM05D003431 ORTHO05D005152 1.6e-31 139.0 84 82.1
vmacro01777 Vaccinium macrocarpon HOM05D003431 ORTHO05D005152 1.6e-31 139.0 85 84.7
Ciclev10002376m.g Citrus clementina HOM05D003431 ORTHO05D005152 2.8e-31 138.3 84 82.1
Gorai.002G208400 Gossypium raimondii HOM05D003431 ORTHO05D005152 2.8e-31 138.3 84 82.1
MBI15_g28822_MAGBIO Magnolia biondii HOM05D003431 ORTHO05D005152 4.8e-31 137.5 84 82.1
Nitab4.5_0010140g0020 Nicotiana tabacum HOM05D003431 ORTHO05D005152 4.8e-31 137.5 84 82.1
DCAR_013995 Daucus carota HOM05D003431 ORTHO05D005152 6.2e-31 137.1 84 79.8
Nitab4.5_0005539g0060 Nicotiana tabacum HOM05D003431 ORTHO05D005152 6.2e-31 137.1 84 81.0
Oeu000195.1 Olea europaea HOM05D003431 ORTHO05D005152 8.1e-31 136.7 84 81.0
Aqoxy4G02442 Aquilegia oxysepala HOM05D003431 ORTHO05D005152 1.1e-30 136.3 84 78.6
Sabra11G0143500 Salix brachista HOM05D003431 ORTHO05D005152 1.1e-30 136.3 84 79.8
Sopen01g046970 Solanum pennellii HOM05D003431 ORTHO05D005152 1.1e-30 136.3 84 81.0
PGSC0003DMG400023745 Solanum tuberosum HOM05D003431 ORTHO05D005152 1.1e-30 136.3 84 81.0
CAN.G1352.24 Capsicum annuum HOM05D003431 ORTHO05D005152 1.8e-30 135.6 84 79.8
Lalb_Chr18g0060821 Lupinus albus HOM05D003431 ORTHO05D005152 1.8e-30 135.6 81 82.7
Cpa.g.sc2.27 Carica papaya HOM05D003431 ORTHO05D005152 2.4e-30 135.2 84 79.8
SalBow6G0908 Salvia bowleyana HOM05D003431 ORTHO05D005152 2.4e-30 135.2 84 81.0
Actinidia39056 Actinidia chinensis HOM05D003431 ORTHO05D005152 5.3e-30 134.0 84 83.3
Sabra16G0311800 Salix brachista HOM05D003431 ORTHO05D005152 5.3e-30 134.0 84 79.8
Solyc01g104470.3 Solanum lycopersicum HOM05D003431 ORTHO05D005152 6.9e-30 133.7 84 79.8
Thecc.02G041300 Theobroma cacao HOM05D003431 ORTHO05D005152 6.9e-30 133.7 84 78.6
Hma1.2p1_0217F.1_g091920 Hydrangea macrophylla HOM05D003431 ORTHO05D005152 9.0e-30 133.3 83 78.3
CiPaw.05G042700 Carya illinoinensis HOM05D003431 ORTHO05D005152 1.5e-29 132.5 83 80.7
Cc02_g22270 Coffea canephora HOM05D003431 ORTHO05D005152 1.5e-29 132.5 84 78.6
COL.COLO4_17896 Corchorus olitorius HOM05D003431 ORTHO05D005152 1.5e-29 132.5 82 81.7
PSO017G6291 Papaver somniferum HOM05D003431 ORTHO05D005152 1.5e-29 132.5 84 78.6
PSO170G4153 Papaver somniferum HOM05D003431 ORTHO05D005152 1.5e-29 132.5 84 78.6
Potri.001G460100 Populus trichocarpa HOM05D003431 ORTHO05D005152 1.5e-29 132.5 84 78.6
arahy.Tifrunner.gnm1.ann1.I5HCXG Arachis hypogaea HOM05D003431 ORTHO05D005152 2.6e-29 131.7 84 77.4
Gohir.A01G176900 Gossypium hirsutum HOM05D003431 ORTHO05D005152 2.6e-29 131.7 84 81.0
Manes.07G013300 Manihot esculenta HOM05D003431 ORTHO05D005152 2.6e-29 131.7 84 81.0
QL02p098641 Quercus lobata HOM05D003431 ORTHO05D005152 2.6e-29 131.7 83 79.5
Lj9A308T36 Lonicera japonica HOM05D003431 ORTHO05D005152 3.4e-29 131.3 84 77.4
PGR142G4046 Punica granatum HOM05D003431 ORTHO05D005152 3.4e-29 131.3 84 77.4
Aa31LG7G9280 Aethionema arabicum HOM05D003431 ORTHO05D005152 4.5e-29 131.0 84 76.2
HanXRQChr01g0021831 Helianthus annuus HOM05D003431 ORTHO05D005152 4.5e-29 131.0 84 75.0
Phvul.006G212200 Phaseolus vulgaris HOM05D003431 ORTHO05D005152 4.5e-29 131.0 84 77.4
TWI14G0641 Tripterygium wilfordii HOM05D003431 ORTHO05D005152 4.5e-29 131.0 84 78.6
Glyma.15G048200 Glycine max HOM05D003431 ORTHO05D005152 5.8e-29 130.6 84 77.4
Lsat_1_v5_gn_7_77981 Lactuca sativa HOM05D003431 ORTHO05D005152 5.8e-29 130.6 84 73.8
Lj6g0011327 Lotus japonicus HOM05D003431 ORTHO05D005152 5.8e-29 130.6 84 76.2
PSO339G0293 Papaver somniferum HOM05D003431 ORTHO05D005152 5.8e-29 130.6 84 77.4
PSO801G0645 Papaver somniferum HOM05D003431 ORTHO05D005152 5.8e-29 130.6 84 77.4
Glyma.08G184300 Glycine max HOM05D003431 ORTHO05D005152 9.9e-29 129.8 84 77.4
Peaxi162Scf00011g00014 Petunia axillaris HOM05D003431 ORTHO05D005152 9.9e-29 129.8 84 77.4
BcaB03g12039 Brassica carinata HOM05D003431 ORTHO05D005152 1.7e-28 129.0 84 75.0
BcaC01g01674 Brassica carinata HOM05D003431 ORTHO05D005152 1.7e-28 129.0 84 75.0
A07p12440 Brassica napus HOM05D003431 ORTHO05D005152 1.7e-28 129.0 84 75.0
A08p26810 Brassica napus HOM05D003431 ORTHO05D005152 1.7e-28 129.0 84 75.0
A09p39090 Brassica napus HOM05D003431 ORTHO05D005152 1.7e-28 129.0 84 75.0
BraA07t29025Z Brassica rapa HOM05D003431 ORTHO05D005152 1.7e-28 129.0 84 75.0
BraA09t39409Z Brassica rapa HOM05D003431 ORTHO05D005152 1.7e-28 129.0 84 75.0
CANSAT11G1865 Cannabis sativa HOM05D003431 ORTHO05D005152 1.7e-28 129.0 84 72.6
Prupe.1G562900 Prunus persica HOM05D003431 ORTHO05D005152 1.7e-28 129.0 84 79.8
VMungo0540G2199 Vigna mungo HOM05D003431 ORTHO05D005152 1.7e-28 129.0 84 76.2
C03p73140 Brassica napus HOM05D003431 ORTHO05D005152 3.8e-28 127.9 84 73.8
Cfa014508 Carpinus fangiana HOM05D003431 ORTHO05D005152 3.8e-28 127.9 84 78.6
Thhalv10008680m.g Eutrema salsugineum HOM05D003431 ORTHO05D005152 3.8e-28 127.9 84 73.8
Sc11g0006640 Simmondsia chinensis HOM05D003431 ORTHO05D005152 3.8e-28 127.9 84 76.2
HanXRQChr03g0066511 Helianthus annuus HOM05D003431 ORTHO05D005152 4.9e-28 127.5 84 73.8
Sp1g23030 Schrenkiella parvula HOM05D003431 ORTHO05D005152 4.9e-28 127.5 84 73.8
unitig_22.g6119 Utricularia gibba HOM05D003431 ORTHO05D005152 4.9e-28 127.5 82 73.2
BcaC05g26486 Brassica carinata HOM05D003431 ORTHO05D005152 6.4e-28 127.1 82 74.4
C05p25340 Brassica napus HOM05D003431 ORTHO05D005152 6.4e-28 127.1 82 74.4
Rhsim11G0131700 Rhododendron simsii HOM05D003431 ORTHO05D005152 8.4e-28 126.7 85 78.8
MD08G1225200 Malus domestica HOM05D003431 ORTHO05D005152 1.1e-27 126.3 84 76.2
BolC3t19610H Brassica oleracea HOM05D003431 ORTHO05D005152 1.4e-27 125.9 79 75.9
BraA08t34627Z Brassica rapa HOM05D003431 ORTHO05D005152 1.4e-27 125.9 79 75.9
Haze_13054 Corylus avellana HOM05D003431 ORTHO05D005152 1.4e-27 125.9 84 77.4
MD15G1418800 Malus domestica HOM05D003431 ORTHO05D005152 1.4e-27 125.9 84 76.2
TWI23G0077 Tripterygium wilfordii HOM05D003431 ORTHO05D005152 1.4e-27 125.9 84 75.0
BcaB03g14023 Brassica carinata HOM05D003431 ORTHO05D005152 1.9e-27 125.6 84 72.6
BcaC05g26690 Brassica carinata HOM05D003431 ORTHO05D005152 1.9e-27 125.6 84 73.8
RcHm_v2.0_Chr7g0224251 Rosa chinensis HOM05D003431 ORTHO05D005152 1.9e-27 125.6 84 77.4
Ca_00090_v3 Cicer arietinum L. HOM05D003431 ORTHO05D005152 2.4e-27 125.2 84 73.8
Ca_29929_v3 Cicer arietinum L. HOM05D003431 ORTHO05D005152 2.4e-27 125.2 84 73.8
Psat1g220040 Pisum sativum HOM05D003431 ORTHO05D005152 2.4e-27 125.2 84 73.8
CiPaw.06G149000 Carya illinoinensis HOM05D003431 ORTHO05D005152 3.2e-27 124.8 84 76.2
ECA236G3864 Erigeron canadensis HOM05D003431 ORTHO05D005152 3.2e-27 124.8 84 72.6
BcaC06g35235 Brassica carinata HOM05D003431 ORTHO05D005152 4.2e-27 124.4 84 73.8
C07p18390 Brassica napus HOM05D003431 ORTHO05D005152 4.2e-27 124.4 84 73.8
BolC5t31269H Brassica oleracea HOM05D003431 ORTHO05D005152 4.2e-27 124.4 82 73.2
Sed0006026 Sechium edule HOM05D003431 ORTHO05D005152 1.2e-26 122.9 84 75.0
ClCG02G000650 Citrullus lanatus HOM05D003431 ORTHO05D005152 1.6e-26 122.5 84 73.8
FAN08G2387 Fragaria x ananassa HOM05D003431 ORTHO05D005152 1.6e-26 122.5 84 75.0
FAN13G1098 Fragaria x ananassa HOM05D003431 ORTHO05D005152 1.6e-26 122.5 84 75.0
HPP92_015419 Vanilla planifolia HOM05D003431 ORTHO05D005152 1.6e-26 122.5 84 71.4
HPP92_026977 Vanilla planifolia HOM05D003431 ORTHO05D005152 1.6e-26 122.5 84 71.4
CARHR026300 Cardamine hirsuta HOM05D003431 ORTHO05D005152 2.1e-26 122.1 84 72.6
Sed0002836 Sechium edule HOM05D003431 ORTHO05D005152 2.7e-26 121.7 84 73.8
TPR.G39937 Trifolium pratense HOM05D003431 ORTHO05D005152 3.5e-26 121.3 81 71.6
ATR0174G027 Amborella trichopoda HOM05D003431 ORTHO05D005152 7.9e-26 120.2 87 69.0
AUR62020868 Chenopodium quinoa HOM05D003431 ORTHO05D005152 7.9e-26 120.2 84 69.0
Hund24426 Selenicereus undatus HOM05D003431 ORTHO05D005152 1.0e-25 119.8 87 71.3
Ah.04g149460 Amaranthus hybridus HOM05D003431 ORTHO05D005152 2.3e-25 118.6 84 71.4
Carub.0001s2531 Capsella rubella HOM05D003431 ORTHO05D005152 2.3e-25 118.6 84 71.4
AUR62018551 Chenopodium quinoa HOM05D003431 ORTHO05D005152 3.9e-25 117.9 84 69.0
Zm00001eb094240 Zea mays HOM05D003431 ORTHO05D005152 5.1e-25 117.5 75 74.7
THA.LOC104807949 Tarenaya hassleriana HOM05D003431 ORTHO05D005152 1.1e-24 116.3 76 73.7
EL10Ac3g07449 Beta vulgaris HOM05D003431 ORTHO05D005152 1.5e-24 115.9 84 70.2
MELO3C023261.2 Cucumis melo HOM05D003431 ORTHO05D005152 1.5e-24 115.9 84 69.0
Zm00001eb163260 Zea mays HOM05D003431 ORTHO05D005152 1.9e-24 115.5 75 72.0
BolC7t42349H Brassica oleracea HOM05D003431 ORTHO05D005152 4.3e-24 114.4 84 67.9
CsaV3_2G018120 Cucumis sativus L. HOM05D003431 ORTHO05D005152 7.4e-24 113.6 84 67.9
Os12g0105200 Oryza sativa ssp. japonica HOM05D003431 ORTHO05D005152 9.6e-24 113.2 75 68.0
Medtr2g007780 Medicago truncatula HOM05D003431 ORTHO05D005152 1.3e-23 112.8 82 69.5
Os11g0105400 Oryza sativa ssp. japonica HOM05D003431 ORTHO05D005152 2.1e-23 112.1 75 66.7
AL1G40100 Arabidopsis lyrata HOM05D003431 ORTHO05D005152 3.7e-23 111.3 77 70.1
Pp3s128_30 Physcomitrium patens HOM05D003431 ORTHO05D005152 4.8e-23 110.9 83 60.2
AT1G25260 Arabidopsis thaliana HOM05D003431 ORTHO05D005152 1.8e-22 109.0 77 67.5
Pp3c11_25500 Physcomitrium patens HOM05D003431 ORTHO05D005152 4.0e-22 107.8 72 65.3
SEGI_37042 Sequoiadendron giganteum HOM05D003431 ORTHO05D005152 6.9e-22 107.1 72 66.7
SMO367G0584 Selaginella moellendorffii HOM05D003431 ORTHO05D005152 5.8e-21 104.0 72 65.3
AagrBONN_evm.TU.Sc2ySwM_369.396 Anthoceros agrestis HOM05D003431 ORTHO05D005152 1.4e-19 99.4 73 61.6
Mapoly0015s0017 Marchantia polymorpha HOM05D003431 ORTHO05D005152 1.4e-19 99.4 73 67.1
CBR_g26270 Chara braunii HOM05D003431 ORTHO05D005152 4.2e-19 97.8 76 61.8
Lsat_1_v5_gn_9_116360 Lactuca sativa HOM05D003431 ORTHO05D005152 7.9e-18 93.6 56 82.1
HanXRQChr10g0305141 Helianthus annuus HOM05D003431 ORTHO05D005152 6.3e-15 84.0 124 42.7
CDE06G1320 Ceratophyllum demersum HOM05D003431 ORTHO05D005152 5.3e-14 80.9 45 91.1
arahy.Tifrunner.gnm1.ann1.N8P1ZJ Arachis hypogaea HOM05D003431 ORTHO05D005152 9.0e-14 80.1 47 85.1
SHI16687 Sapria himalayana HOM05D003431 ORTHO05D005152 1.5e-13 79.3 81 59.3
FvH4_5g30060 Fragaria vesca HOM05D003431 ORTHO05D005152 2.6e-13 78.6 47 80.9
Nn2g13208 Nelumbo nucifera HOM05D003431 ORTHO05D005152 3.4e-13 78.2 45 86.7
SGA_v2.0_scaffold110G31286 Striga asiatica HOM05D003431 ORTHO05D005152 3.4e-13 78.2 50 70.0
FAN04G1904 Fragaria x ananassa HOM05D003431 ORTHO05D005152 5.9e-13 77.4 45 84.4
FAN18G1423 Fragaria x ananassa HOM05D003431 ORTHO05D005152 1.3e-12 76.3 45 82.2
MCO04G167 Micromonas commoda HOM05D003431 ORTHO05D005152 5.5e-11 70.9 63 49.2
Cre06.g261700 Chlamydomonas reinhardtii HOM05D003431 ORTHO05D005152 5.7e-08 60.8 82 45.1
PRCOL_00006634 Prasinoderma coloniale HOM05D003431 ORTHO05D005152 3.7e-07 58.2 63 42.9
Cfa023894 Carpinus fangiana HOM05D003431 ORTHO05D005152 4.8e-07 57.8 72 38.9
Lalb_Chr15g0090611 Lupinus albus HOM05D003431 ORTHO05D005152 8.2e-07 57.0 39 69.2


User provided reference genes

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