Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv19279 Davidia involucrata HOM05D006573 ORTHO05D008073 2.7e-280 968.0 479 100.0
Actinidia06814 Actinidia chinensis HOM05D006573 ORTHO05D008073 4.8e-213 744.6 480 77.1
CSS0006565 Camellia sinensis var. sinensis HOM05D006573 ORTHO05D008073 4.8e-213 744.6 479 77.9
Hma1.2p1_0123F.1_g058030 Hydrangea macrophylla HOM05D006573 ORTHO05D008073 6.7e-207 724.2 479 74.3
CSS0039030 Camellia sinensis var. sinensis HOM05D006573 ORTHO05D008073 2.4e-196 689.1 479 73.5
TAR362G0441 Trochodendron aralioides HOM05D006573 ORTHO05D008073 5.3e-196 688.0 483 72.9
GSVIVG01026405001 Vitis vinifera HOM05D006573 ORTHO05D008073 1.1e-193 680.2 441 76.6
Manes.09G144600 Manihot esculenta HOM05D006573 ORTHO05D008073 1.9e-193 679.5 452 75.9
Thecc.05G259800 Theobroma cacao HOM05D006573 ORTHO05D008073 1.8e-191 672.9 469 72.5
Duzib177G1122 Durio zibethinus HOM05D006573 ORTHO05D008073 2.3e-191 672.5 488 70.5
Prupe.6G356100 Prunus persica HOM05D006573 ORTHO05D008073 2.2e-189 666.0 484 70.0
Potri.013G053100 Populus trichocarpa HOM05D006573 ORTHO05D008073 4.8e-189 664.8 460 72.8
Ciclev10019925m.g Citrus clementina HOM05D006573 ORTHO05D008073 2.4e-188 662.5 484 68.0
Gohir.D11G250400 Gossypium hirsutum HOM05D006573 ORTHO05D008073 4.5e-187 658.3 488 68.6
Gorai.007G268500 Gossypium raimondii HOM05D006573 ORTHO05D008073 4.5e-187 658.3 488 68.6
Nn1g07946 Nelumbo nucifera HOM05D006573 ORTHO05D008073 7.7e-187 657.5 461 73.3
Cc09_g03200 Coffea canephora HOM05D006573 ORTHO05D008073 1.9e-185 652.9 485 69.3
RcHm_v2.0_Chr3g0448661 Rosa chinensis HOM05D006573 ORTHO05D008073 3.2e-185 652.1 484 67.6
Sabra13G0048100 Salix brachista HOM05D006573 ORTHO05D008073 1.8e-183 646.4 492 68.5
FAN05G2122 Fragaria x ananassa HOM05D006573 ORTHO05D008073 5.2e-183 644.8 488 66.4
FAN05G3303 Fragaria x ananassa HOM05D006573 ORTHO05D008073 6.8e-183 644.4 488 66.6
MD12G1255200 Malus domestica HOM05D006573 ORTHO05D008073 2.0e-182 642.9 417 76.3
FvH4_6g01130 Fragaria vesca HOM05D006573 ORTHO05D008073 7.5e-182 641.0 492 65.9
Haze_04495 Corylus avellana HOM05D006573 ORTHO05D008073 9.8e-182 640.6 364 83.2
CANSAT21G0678 Cannabis sativa HOM05D006573 ORTHO05D008073 2.8e-181 639.0 442 71.7
Cpa.g.sc51.78 Carica papaya HOM05D006573 ORTHO05D008073 2.8e-181 639.0 431 74.5
FAN14G5930 Fragaria x ananassa HOM05D006573 ORTHO05D008073 2.8e-181 639.0 492 65.7
THA.LOC104805797 Tarenaya hassleriana HOM05D006573 ORTHO05D008073 2.8e-181 639.0 382 81.2
Eucgr.B02180 Eucalyptus grandis HOM05D006573 ORTHO05D008073 3.7e-181 638.6 364 82.4
FAN09G4254 Fragaria x ananassa HOM05D006573 ORTHO05D008073 4.9e-181 638.3 492 65.7
Atru.chr2.1254 Acer truncatum HOM05D006573 ORTHO05D008073 9.1e-180 634.0 485 67.6
Nitab4.5_0000344g0030 Nicotiana tabacum HOM05D006573 ORTHO05D008073 7.7e-179 630.9 481 66.7
Aa31sc20G120 Aethionema arabicum HOM05D006573 ORTHO05D008073 1.7e-178 629.8 367 80.7
Nitab4.5_0012098g0010 Nicotiana tabacum HOM05D006573 ORTHO05D008073 1.7e-178 629.8 481 66.7
Glyma.19G251000 Glycine max HOM05D006573 ORTHO05D008073 2.9e-178 629.0 489 66.9
vmacro12852 Vaccinium macrocarpon HOM05D006573 ORTHO05D008073 2.9e-178 629.0 568 58.8
CAN.G29.20 Capsicum annuum HOM05D006573 ORTHO05D008073 7.2e-177 624.4 481 65.9
PGSC0003DMG400010688 Solanum tuberosum HOM05D006573 ORTHO05D008073 3.6e-176 622.1 481 65.7
Glyma.03G253500 Glycine max HOM05D006573 ORTHO05D008073 5.2e-175 618.2 488 65.8
AUR62005294 Chenopodium quinoa HOM05D006573 ORTHO05D008073 3.4e-174 615.5 451 68.3
Lalb_Chr18g0044221 Lupinus albus HOM05D006573 ORTHO05D008073 4.4e-174 615.1 397 74.8
AUR62000660 Chenopodium quinoa HOM05D006573 ORTHO05D008073 5.7e-174 614.8 496 63.9
Sopen04g022050 Solanum pennellii HOM05D006573 ORTHO05D008073 5.7e-174 614.8 481 64.7
Lj1g0015745 Lotus japonicus HOM05D006573 ORTHO05D008073 7.5e-174 614.4 479 65.8
Gohir.A11G241000 Gossypium hirsutum HOM05D006573 ORTHO05D008073 9.8e-174 614.0 488 65.0
Solyc04g050930.3 Solanum lycopersicum HOM05D006573 ORTHO05D008073 1.7e-173 613.2 481 64.4
SGA_v2.0_scaffold13G06342 Striga asiatica HOM05D006573 ORTHO05D008073 2.2e-173 612.8 414 72.9
MBI11_g07442_MAGBIO Magnolia biondii HOM05D006573 ORTHO05D008073 4.9e-173 611.7 472 65.9
ECA248G2645 Erigeron canadensis HOM05D006573 ORTHO05D008073 6.3e-173 611.3 494 63.6
CiPaw.07G075700 Carya illinoinensis HOM05D006573 ORTHO05D008073 8.3e-173 610.9 480 65.6
VMungo0540G0667 Vigna mungo HOM05D006573 ORTHO05D008073 8.3e-173 610.9 442 69.7
Medtr7g116630 Medicago truncatula HOM05D006573 ORTHO05D008073 1.1e-172 610.5 387 75.2
ATR0069G016 Amborella trichopoda HOM05D006573 ORTHO05D008073 1.4e-172 610.1 358 81.3
C05p06650 Brassica napus HOM05D006573 ORTHO05D008073 1.8e-172 609.8 411 73.2
Rhsim10G0138000 Rhododendron simsii HOM05D006573 ORTHO05D008073 3.2e-172 609.0 469 67.6
Sp1g07210 Schrenkiella parvula HOM05D006573 ORTHO05D008073 4.1e-172 608.6 391 75.4
Thhalv10007587m.g Eutrema salsugineum HOM05D006573 ORTHO05D008073 7.0e-172 607.8 391 75.4
A06p05540 Brassica napus HOM05D006573 ORTHO05D008073 9.2e-172 607.4 391 74.9
BolC5t29425H Brassica oleracea HOM05D006573 ORTHO05D008073 9.2e-172 607.4 411 72.7
BraA06t23762Z Brassica rapa HOM05D006573 ORTHO05D008073 1.6e-171 606.7 391 74.9
CARHR008450 Cardamine hirsuta HOM05D006573 ORTHO05D008073 2.0e-171 606.3 412 72.3
Sc09g0001730 Simmondsia chinensis HOM05D006573 ORTHO05D008073 2.0e-171 606.3 436 69.3
EL10Ac4g09803 Beta vulgaris HOM05D006573 ORTHO05D008073 2.7e-171 605.9 483 64.4
MSTRG.8177 Avicennia marina HOM05D006573 ORTHO05D008073 3.5e-171 605.5 482 65.1
Phvul.006G108200 Phaseolus vulgaris HOM05D006573 ORTHO05D008073 7.8e-171 604.4 489 64.4
arahy.Tifrunner.gnm1.ann1.ZGZX3T Arachis hypogaea HOM05D006573 ORTHO05D008073 1.3e-170 603.6 381 75.3
arahy.Tifrunner.gnm1.ann1.L0KK3Q Arachis hypogaea HOM05D006573 ORTHO05D008073 1.7e-170 603.2 381 75.3
Oeu054601.1 Olea europaea HOM05D006573 ORTHO05D008073 1.7e-170 603.2 492 63.4
TWI34G1215 Tripterygium wilfordii HOM05D006573 ORTHO05D008073 1.7e-170 603.2 484 64.3
TPR.G4727 Trifolium pratense HOM05D006573 ORTHO05D008073 3.9e-170 602.1 370 77.3
AL1G18980 Arabidopsis lyrata HOM05D006573 ORTHO05D008073 6.6e-170 601.3 369 77.2
Aqoxy2G03898 Aquilegia oxysepala HOM05D006573 ORTHO05D008073 1.5e-169 600.1 446 67.5
Ca_09476_v3 Cicer arietinum L. HOM05D006573 ORTHO05D008073 1.9e-169 599.7 364 78.0
PSO017G7064 Papaver somniferum HOM05D006573 ORTHO05D008073 5.6e-169 598.2 488 62.7
Migut.F02066 Erythranthe guttata HOM05D006573 ORTHO05D008073 1.2e-168 597.0 472 64.6
PSO063G7541 Papaver somniferum HOM05D006573 ORTHO05D008073 2.8e-168 595.9 489 63.2
DCAR_013654 Daucus carota HOM05D006573 ORTHO05D008073 1.8e-167 593.2 515 60.2
HanXRQChr13g0406621 Helianthus annuus HOM05D006573 ORTHO05D008073 1.5e-166 590.1 483 63.1
Peaxi162Scf01011g00215 Petunia axillaris HOM05D006573 ORTHO05D008073 4.4e-166 588.6 484 63.4
HPP92_020222 Vanilla planifolia HOM05D001545 ORTHO05D001600 1.7e-165 586.6 468 64.7
Lsat_1_v5_gn_7_62281 Lactuca sativa HOM05D006573 ORTHO05D008073 6.4e-165 584.7 484 62.4
Lj2A407T38 Lonicera japonica HOM05D006573 ORTHO05D008073 1.9e-164 583.2 386 74.1
AT1G08550 Arabidopsis thaliana HOM05D006573 ORTHO05D008073 7.0e-164 581.3 388 73.2
CDE05G0683 Ceratophyllum demersum HOM05D006573 ORTHO05D008073 5.0e-162 575.1 452 64.4
Carub.0001s0791 Capsella rubella HOM05D006573 ORTHO05D008073 3.3e-161 572.4 412 69.7
BcaB07g34098 Brassica carinata HOM05D006573 ORTHO05D008073 1.6e-160 570.1 411 69.8
Lj2A405T39 Lonicera japonica HOM05D006573 ORTHO05D008073 2.3e-159 566.2 381 72.4
Psat3g005000 Pisum sativum HOM05D006573 ORTHO05D008073 1.7e-157 560.1 366 72.4
Hund07152 Selenicereus undatus HOM05D006573 ORTHO05D008073 5.4e-156 555.1 483 59.8
Zm00001eb085840 Zea mays HOM05D006573 ORTHO05D008073 2.7e-155 552.7 368 70.1
ClCG11G010060 Citrullus lanatus HOM05D006573 ORTHO05D008073 4.4e-150 535.4 356 71.9
CsaV3_2G010250 Cucumis sativus L. HOM05D006573 ORTHO05D008073 4.4e-150 535.4 329 76.6
Ah.06g188810 Amaranthus hybridus HOM05D006573 ORTHO05D008073 1.4e-148 530.4 371 70.4
MELO3C008677.2 Cucumis melo HOM05D006573 ORTHO05D008073 1.9e-148 530.0 411 65.2
Sed0012720 Sechium edule HOM05D006573 ORTHO05D008073 2.3e-146 523.1 415 63.6
SEGI_03231 Sequoiadendron giganteum HOM05D006573 ORTHO05D008073 8.6e-146 521.2 366 67.5
SalBow1G0293 Salvia bowleyana HOM05D006573 ORTHO05D008073 6.2e-144 515.0 447 61.1
COL.COLO4_20557 Corchorus olitorius HOM05D006573 ORTHO05D008073 1.8e-143 513.5 286 82.9
SalBow1G2715 Salvia bowleyana HOM05D006573 ORTHO05D008073 3.1e-143 512.7 447 60.9
Mapoly0111s0023 Marchantia polymorpha HOM05D006573 ORTHO05D008073 3.5e-139 499.2 387 63.6
AagrBONN_evm.TU.Sc2ySwM_228.1660 Anthoceros agrestis HOM05D006573 ORTHO05D008073 7.3e-129 464.9 358 62.0
SMO270G0104 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 4.8e-128 462.2 331 67.1
Pp3c3_13220 Physcomitrium patens HOM05D006573 ORTHO05D008073 6.4e-125 451.8 389 58.4
Hma1.2p1_0123F.1_g058020 Hydrangea macrophylla HOM05D006573 ORTHO05D008073 2.1e-120 436.8 311 68.5
CBR_g38554 Chara braunii HOM05D006573 ORTHO05D008073 4.8e-120 435.6 353 58.6
CDE05G0621 Ceratophyllum demersum HOM05D006573 ORTHO05D008073 1.5e-110 404.1 229 78.2
SEGI_19143 Sequoiadendron giganteum HOM05D006573 ORTHO05D008073 3.8e-109 399.4 273 63.4
Os04g0379700 Oryza sativa ssp. japonica HOM05D006573 ORTHO05D008073 8.2e-104 381.7 244 74.2
Lj2C408T2 Lonicera japonica HOM05D006573 ORTHO05D008073 3.0e-98 363.2 372 54.8
unitig_46.g17980 Utricularia gibba HOM05D006573 ORTHO05D008073 6.1e-91 339.0 224 71.9
PGSC0003DMG400010690 Solanum tuberosum HOM05D006573 ORTHO05D008073 2.7e-83 313.5 239 63.2
PRCOL_00001224 Prasinoderma coloniale HOM05D006573 ORTHO05D008073 7.0e-71 272.3 339 43.7
MCO16G084 Micromonas commoda HOM05D006573 ORTHO05D008073 1.6e-70 271.2 294 46.3
SMO297G0027 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 2.0e-70 270.8 204 56.4
SMO334G0031 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 2.0e-70 270.8 204 56.4
SMO270G0143 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 2.2e-69 267.3 204 55.9
SMO297G0014 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 3.8e-69 266.5 204 55.9
PGSC0003DMG400020993 Solanum tuberosum HOM05D006573 ORTHO05D008073 1.1e-52 211.8 210 51.9
unitig_46.g17981 Utricularia gibba HOM05D006573 ORTHO05D008073 2.4e-39 167.5 141 64.5
SMO266G0012 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 4.4e-33 146.7 98 60.2
Haze_04503 Corylus avellana HOM05D006573 ORTHO05D008073 4.3e-20 103.6 93 64.5
QL93p0249_0008 Quercus lobata HOM05D006573 ORTHO05D008073 1.4e-15 88.6 165 41.8
Haze_04505 Corylus avellana HOM05D006573 ORTHO05D008073 1.9e-15 88.2 84 61.9
AagrBONN_evm.TU.Sc2ySwM_344.2769 Anthoceros agrestis HOM05D006367 ORTHO05D007942 1.3e-11 75.5 269 22.7
Pp3c8_810 Physcomitrium patens HOM05D006367 ORTHO05D007942 2.8e-11 74.3 284 24.6
Cc07_g16470 Coffea canephora HOM05D006367 ORTHO05D007942 1.8e-10 71.6 311 23.5
ATR1120G154 Amborella trichopoda HOM05D006367 ORTHO05D007942 2.4e-10 71.2 310 22.3
THA.LOC104807726 Tarenaya hassleriana HOM05D006367 ORTHO05D007942 2.4e-10 71.2 277 24.2
Hund02300 Selenicereus undatus HOM05D006367 ORTHO05D007942 5.3e-10 70.1 323 21.7
Hma1.2p1_0696F.1_g204660 Hydrangea macrophylla HOM05D006367 ORTHO05D007942 6.9e-10 69.7 325 24.0
TAR625G1249 Trochodendron aralioides HOM05D006367 ORTHO05D007942 2.0e-09 68.2 309 23.0
Duzib187G0980 Durio zibethinus HOM05D006367 ORTHO05D007942 3.4e-09 67.4 328 22.3
Nn5g28853 Nelumbo nucifera HOM05D006367 ORTHO05D007942 3.4e-09 67.4 309 23.3
CSS0012231 Camellia sinensis var. sinensis HOM05D006367 ORTHO05D007942 4.5e-09 67.0 309 23.0
MSTRG.23307 Avicennia marina HOM05D006367 ORTHO05D007942 7.6e-09 66.2 309 23.3
TWI75G1400 Tripterygium wilfordii HOM05D006367 ORTHO05D007942 7.6e-09 66.2 310 21.0
AL4G11170 Arabidopsis lyrata HOM05D006367 ORTHO05D007942 1.7e-08 65.1 343 22.7
Eucgr.I00312 Eucalyptus grandis HOM05D006367 ORTHO05D007942 2.2e-08 64.7 340 23.2
CDE04G0187 Ceratophyllum demersum HOM05D006367 ORTHO05D007942 2.9e-08 64.3 235 22.1
PGR004G1961 Punica granatum HOM05D006367 ORTHO05D007942 2.9e-08 64.3 307 21.5
Sabra05G0070700 Salix brachista HOM05D006367 ORTHO05D007942 4.9e-08 63.5 313 22.4
COL.COLO4_10985 Corchorus olitorius HOM05D006367 ORTHO05D007942 6.4e-08 63.2 342 21.1
Migut.H02447 Erythranthe guttata HOM05D006367 ORTHO05D007942 6.4e-08 63.2 346 22.3
Potri.005G085800 Populus trichocarpa HOM05D006367 ORTHO05D007942 6.4e-08 63.2 339 21.8
Lj4P863T60 Lonicera japonica HOM05D006367 ORTHO05D007942 1.1e-07 62.4 324 22.8
Thecc.01G115500 Theobroma cacao HOM05D006367 ORTHO05D007942 1.4e-07 62.0 309 21.7
CiPaw.04G090000 Carya illinoinensis HOM05D006367 ORTHO05D007942 3.2e-07 60.8 309 22.3
CBR_g8843 Chara braunii HOM05D006367 ORTHO05D007942 3.2e-07 60.8 264 22.3
Cfa002770 Carpinus fangiana HOM05D006367 ORTHO05D007942 4.2e-07 60.5 330 20.6
Haze_25063 Corylus avellana HOM05D006367 ORTHO05D007942 5.5e-07 60.1 307 20.8
QL06p031689 Quercus lobata HOM05D006367 ORTHO05D007942 5.5e-07 60.1 309 22.3
Cc04_g11230 Coffea canephora HOM05D006367 ORTHO05D007942 2.7e-06 57.8 218 21.6
SGA_v2.0_scaffold2G01287 Striga asiatica HOM05D006367 ORTHO05D007942 3.5e-06 57.4 228 22.4


User provided reference genes

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