Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv19127 Davidia involucrata HOM05D004012 ORTHO05D004752 6.9e-251 870.2 436 100.0
Dinv26833 Davidia involucrata HOM05D004012 ORTHO05D004752 3.3e-221 771.5 442 88.9
Hma1.2p1_3052F.1_g332140 Hydrangea macrophylla HOM05D004012 ORTHO05D004752 5.9e-218 760.8 436 88.1
Hma1.2p1_0513F.1_g169610 Hydrangea macrophylla HOM05D004012 ORTHO05D004752 1.5e-216 756.1 436 87.6
CSS0025733 Camellia sinensis var. sinensis HOM05D004012 ORTHO05D004752 3.2e-208 728.4 436 84.9
AUR62000581 Chenopodium quinoa HOM05D004012 ORTHO05D004752 8.6e-201 703.7 436 81.7
Nn5g27391 Nelumbo nucifera HOM05D004012 ORTHO05D004752 3.3e-200 701.8 437 81.5
Sc16g0009950 Simmondsia chinensis HOM05D004012 ORTHO05D004752 4.2e-200 701.4 436 80.7
Hund07194 Selenicereus undatus HOM05D004012 ORTHO05D004752 9.5e-200 700.3 436 80.7
AUR62006937 Chenopodium quinoa HOM05D004012 ORTHO05D004752 2.8e-199 698.7 436 81.2
Rhsim01G0147700 Rhododendron simsii HOM05D004012 ORTHO05D004752 1.0e-198 696.8 464 78.2
TAR628G1247 Trochodendron aralioides HOM05D004012 ORTHO05D004752 5.2e-198 694.5 467 77.1
GSVIVG01000257001 Vitis vinifera HOM05D004012 ORTHO05D004752 2.7e-194 682.2 410 83.7
Manes.13G154600 Manihot esculenta HOM05D004012 ORTHO05D004752 1.9e-192 676.0 435 79.1
CiPaw.15G186100 Carya illinoinensis HOM05D004012 ORTHO05D004752 3.3e-192 675.2 434 78.6
MSTRG.9397 Avicennia marina HOM05D004012 ORTHO05D004752 9.5e-192 673.7 438 75.8
SalBow1G0131 Salvia bowleyana HOM05D004012 ORTHO05D004752 2.8e-191 672.2 438 76.5
RcHm_v2.0_Chr7g0205341 Rosa chinensis HOM05D004012 ORTHO05D004752 4.7e-191 671.4 438 77.4
Oeu034405.1 Olea europaea HOM05D004012 ORTHO05D004752 6.1e-191 671.0 446 76.5
ECA238G2948 Erigeron canadensis HOM05D004012 ORTHO05D004752 1.0e-190 670.2 438 77.4
Sopen04g017040 Solanum pennellii HOM05D004012 ORTHO05D004752 8.9e-190 667.2 436 78.4
CAN.G10.8 Capsicum annuum HOM05D004012 ORTHO05D004752 1.2e-189 666.8 436 78.4
Atru.chr3.1437 Acer truncatum HOM05D004012 ORTHO05D004752 9.8e-189 663.7 434 77.6
Aqoxy5G01862 Aquilegia oxysepala HOM05D004012 ORTHO05D004752 1.7e-188 662.9 437 76.4
Prupe.5G058000 Prunus persica HOM05D004012 ORTHO05D004752 2.2e-188 662.5 438 78.1
Potri.017G122600 Populus trichocarpa HOM05D004012 ORTHO05D004752 4.9e-188 661.4 435 77.2
Migut.D01135 Erythranthe guttata HOM05D004012 ORTHO05D004752 1.1e-187 660.2 438 73.7
FvH4_5g20280 Fragaria vesca HOM05D004012 ORTHO05D004752 4.6e-186 654.8 438 76.3
MELO3C023211.2 Cucumis melo HOM05D004012 ORTHO05D004752 6.0e-186 654.4 432 76.2
FAN18G2241 Fragaria x ananassa HOM05D004012 ORTHO05D004752 1.3e-185 653.3 438 76.0
MBI10_g20270_MAGBIO Magnolia biondii HOM05D004012 ORTHO05D004752 1.7e-185 652.9 437 75.5
FAN08G1522 Fragaria x ananassa HOM05D004012 ORTHO05D004752 2.3e-185 652.5 438 75.8
MD04G1052500 Malus domestica HOM05D004012 ORTHO05D004752 8.6e-185 650.6 438 76.9
EL10Ac4g09708 Beta vulgaris HOM05D004012 ORTHO05D004752 1.1e-184 650.2 437 77.1
MSTRG.4671 Avicennia marina HOM05D004012 ORTHO05D004752 1.5e-184 649.8 438 73.7
FAN04G0350 Fragaria x ananassa HOM05D004012 ORTHO05D004752 1.9e-184 649.4 438 75.6
Lj6g0017875 Lotus japonicus HOM05D004012 ORTHO05D004752 1.9e-184 649.4 432 75.5
CsaV3_2G019600 Cucumis sativus L. HOM05D004012 ORTHO05D004752 3.3e-184 648.7 432 75.9
HanXRQChr13g0402671 Helianthus annuus HOM05D004012 ORTHO05D004752 8.0e-183 644.0 437 74.6
ClCG02G000230 Citrullus lanatus HOM05D004012 ORTHO05D004752 1.1e-182 643.7 444 74.3
Glyma.02G005000 Glycine max HOM05D004012 ORTHO05D004752 1.4e-182 643.3 432 75.7
MD06G1047700 Malus domestica HOM05D004012 ORTHO05D004752 1.4e-182 643.3 438 76.0
Gohir.D10G106700 Gossypium hirsutum HOM05D004012 ORTHO05D004752 2.0e-181 639.4 437 74.8
Gorai.011G116800 Gossypium raimondii HOM05D004012 ORTHO05D004752 2.0e-181 639.4 437 74.8
Gohir.A10G084900 Gossypium hirsutum HOM05D004012 ORTHO05D004752 3.4e-181 638.6 437 74.8
Lalb_Chr01g0020921 Lupinus albus HOM05D004012 ORTHO05D004752 4.4e-181 638.3 432 74.8
CANSAT54G0087 Cannabis sativa HOM05D004012 ORTHO05D004752 5.8e-181 637.9 435 74.5
Lalb_Chr03g0037441 Lupinus albus HOM05D004012 ORTHO05D004752 1.3e-180 636.7 432 75.7
Phvul.007G277800 Phaseolus vulgaris HOM05D004012 ORTHO05D004752 1.3e-180 636.7 432 75.0
VMungo0720G3057 Vigna mungo HOM05D004012 ORTHO05D004752 2.9e-180 635.6 432 74.5
TWI31G0701 Tripterygium wilfordii HOM05D004012 ORTHO05D004752 6.4e-180 634.4 435 75.2
Lalb_Chr19g0127941 Lupinus albus HOM05D004012 ORTHO05D004752 3.5e-178 628.6 432 74.5
CDE05G2224 Ceratophyllum demersum HOM05D004012 ORTHO05D004752 2.5e-176 622.5 435 73.3
Sed0016932 Sechium edule HOM05D004012 ORTHO05D004752 7.3e-176 620.9 435 73.6
Ca_12160_v3 Cicer arietinum L. HOM05D004012 ORTHO05D004752 8.1e-175 617.5 435 71.0
Cc07_g20580 Coffea canephora HOM05D004012 ORTHO05D004752 1.1e-174 617.1 392 79.8
Eucgr.I00032 Eucalyptus grandis HOM05D004012 ORTHO05D004752 1.3e-172 610.1 438 70.8
PGR119G2008 Punica granatum HOM05D004012 ORTHO05D004752 8.3e-172 607.4 438 70.3
Cc07_g20480 Coffea canephora HOM05D004012 ORTHO05D004752 9.2e-171 604.0 392 78.6
vmacro21003 Vaccinium macrocarpon HOM05D004012 ORTHO05D004752 1.2e-170 603.6 418 76.1
Lsat_1_v5_gn_0_9061 Lactuca sativa HOM05D004012 ORTHO05D004752 2.7e-170 602.4 437 71.4
arahy.Tifrunner.gnm1.ann1.5Q2P9B Arachis hypogaea HOM05D004012 ORTHO05D004752 1.1e-168 597.0 435 71.5
arahy.Tifrunner.gnm1.ann1.EZQ64B Arachis hypogaea HOM05D004012 ORTHO05D004752 1.1e-168 597.0 435 71.5
unitig_0.g354 Utricularia gibba HOM05D004012 ORTHO05D004752 5.6e-168 594.7 437 68.0
DCAR_009624 Daucus carota HOM05D004012 ORTHO05D004752 1.6e-167 593.2 439 70.4
Glyma.10G003500 Glycine max HOM05D004012 ORTHO05D004752 8.1e-167 590.9 402 73.9
Psat6g104000 Pisum sativum HOM05D004012 ORTHO05D004752 5.2e-166 588.2 455 66.4
Potri.004G092400 Populus trichocarpa HOM05D004012 ORTHO05D004752 6.8e-166 587.8 403 74.7
Medtr1g041405 Medicago truncatula HOM05D004012 ORTHO05D004752 1.7e-164 583.2 454 65.9
CDE05G3168 Ceratophyllum demersum HOM05D004012 ORTHO05D004752 1.4e-163 580.1 441 69.6
Actinidia30855 Actinidia chinensis HOM05D004012 ORTHO05D004752 3.2e-163 578.9 437 72.5
Sabra04G0062100 Salix brachista HOM05D004012 ORTHO05D004752 3.0e-161 572.4 445 67.9
TPR.G25177 Trifolium pratense HOM05D004012 ORTHO05D004752 5.1e-161 571.6 449 65.7
ATR1089G159 Amborella trichopoda HOM05D004012 ORTHO05D004752 1.1e-160 570.5 441 66.9
Actinidia14359 Actinidia chinensis HOM05D004012 ORTHO05D004752 1.9e-160 569.7 467 67.5
Thhalv10013606m.g Eutrema salsugineum HOM05D004012 ORTHO05D004752 2.5e-160 569.3 434 64.5
Aa31LG11G11210 Aethionema arabicum HOM05D004012 ORTHO05D004752 4.0e-158 562.0 458 60.7
TAR376G0099 Trochodendron aralioides HOM05D004012 ORTHO05D004752 6.9e-158 561.2 384 75.8
SGA_v2.0_scaffold14G07064 Striga asiatica HOM05D004012 ORTHO05D004752 2.0e-157 559.7 438 65.3
Sp6g25900 Schrenkiella parvula HOM05D004012 ORTHO05D004752 4.4e-157 558.5 434 63.4
TWI79G0644 Tripterygium wilfordii HOM05D004012 ORTHO05D004752 7.6e-157 557.8 435 69.0
Lsat_1_v5_gn_5_118080 Lactuca sativa HOM05D004012 ORTHO05D004752 1.7e-156 556.6 440 67.3
MBI06_g32154_MAGBIO Magnolia biondii HOM05D004012 ORTHO05D004752 1.7e-156 556.6 423 67.4
PSO210G3799 Papaver somniferum HOM05D004012 ORTHO05D004752 2.2e-156 556.2 437 67.7
Duzib147G1077 Durio zibethinus HOM05D004012 ORTHO05D004752 8.4e-156 554.3 441 68.5
PSO761G0211 Papaver somniferum HOM05D004012 ORTHO05D004752 8.4e-156 554.3 437 68.0
Carub.0006s1668 Capsella rubella HOM05D004012 ORTHO05D004752 1.4e-155 553.5 435 63.2
BcaB08g36680 Brassica carinata HOM05D004012 ORTHO05D004752 3.2e-155 552.4 436 63.3
C09p58260 Brassica napus HOM05D004012 ORTHO05D004752 3.5e-154 548.9 450 61.8
A10p21150 Brassica napus HOM05D004012 ORTHO05D004752 2.3e-153 546.2 456 61.0
BolC9t58691H Brassica oleracea HOM05D004012 ORTHO05D004752 2.3e-153 546.2 452 61.1
BraA10t44178Z Brassica rapa HOM05D004012 ORTHO05D004752 3.0e-153 545.8 457 60.8
AT5G18420 Arabidopsis thaliana HOM05D004012 ORTHO05D004752 4.3e-152 542.0 433 61.7
Ciclev10005092m.g Citrus clementina HOM05D004012 ORTHO05D004752 7.3e-152 541.2 396 70.2
Eucgr.I00085 Eucalyptus grandis HOM05D004012 ORTHO05D004752 1.3e-151 540.4 391 69.6
Thecc.01G145600 Theobroma cacao HOM05D004012 ORTHO05D004752 4.8e-151 538.5 381 72.7
THA.LOC104806688 Tarenaya hassleriana HOM05D004012 ORTHO05D004752 2.4e-150 536.2 432 62.7
HPP92_005635 Vanilla planifolia HOM05D004012 ORTHO05D004752 2.4e-150 536.2 351 77.5
CARHR194600 Cardamine hirsuta HOM05D004012 ORTHO05D004752 3.1e-150 535.8 438 61.9
Mapoly0005s0018 Marchantia polymorpha HOM05D004012 ORTHO05D004752 5.3e-150 535.0 436 62.6
Actinidia12239 Actinidia chinensis HOM05D004012 ORTHO05D004752 9.0e-150 534.3 309 86.4
Sabra17G0101400 Salix brachista HOM05D004012 ORTHO05D004752 1.5e-149 533.5 396 69.9
Sabra17G0104000 Salix brachista HOM05D004012 ORTHO05D004752 1.5e-149 533.5 396 69.9
BolC3t13514H Brassica oleracea HOM05D004012 ORTHO05D004752 1.7e-148 530.0 455 59.8
BraA03t10211Z Brassica rapa HOM05D004012 ORTHO05D004752 2.2e-148 529.6 455 59.8
Duzib187G0370 Durio zibethinus HOM05D004012 ORTHO05D004752 1.8e-145 520.0 321 82.2
AL6G29670 Arabidopsis lyrata HOM05D004012 ORTHO05D004752 1.5e-144 516.9 385 66.5
Duzib264G1318 Durio zibethinus HOM05D004012 ORTHO05D004752 2.1e-143 513.1 367 72.8
Lj4A823T24 Lonicera japonica HOM05D004012 ORTHO05D004752 7.6e-141 504.6 302 83.8
Pp3c20_12330 Physcomitrium patens HOM05D004012 ORTHO05D004752 1.9e-136 490.0 435 59.1
Ah.02g118090 Amaranthus hybridus HOM05D004012 ORTHO05D004752 9.6e-136 487.6 388 66.2
Os11g0240900 Oryza sativa ssp. japonica HOM05D004012 ORTHO05D004752 6.2e-135 485.0 423 59.1
CBR_g22449 Chara braunii HOM05D004012 ORTHO05D004752 1.5e-133 480.3 435 60.7
Pp3c24_6950 Physcomitrium patens HOM05D004012 ORTHO05D004752 5.8e-133 478.4 435 57.7
C03p10330 Brassica napus HOM05D004012 ORTHO05D004752 1.1e-131 474.2 423 57.4
FAN13G1241 Fragaria x ananassa HOM05D004012 ORTHO05D004752 4.8e-127 458.8 334 69.2
Zm00001eb112220 Zea mays HOM05D004012 ORTHO05D004752 5.0e-124 448.7 438 56.6
Zm00001eb167940 Zea mays HOM05D004012 ORTHO05D004752 8.5e-124 448.0 432 57.2
Pp3c23_1780 Physcomitrium patens HOM05D004012 ORTHO05D004752 1.5e-120 437.2 354 64.1
Nitab4.5_0000064g0090 Nicotiana tabacum HOM05D004012 ORTHO05D004752 7.7e-109 398.3 281 71.2
DCAR_019944 Daucus carota HOM05D004012 ORTHO05D004752 1.3e-108 397.5 324 66.0
PGSC0003DMG401004242 Solanum tuberosum HOM05D004012 ORTHO05D004752 1.6e-106 390.6 281 71.5
Solyc04g024500.3 Solanum lycopersicum HOM05D004012 ORTHO05D004752 8.0e-106 388.3 281 70.8
Peaxi162Scf00621g00412 Petunia axillaris HOM05D004012 ORTHO05D004752 1.8e-105 387.1 281 69.4
Oeu036288.1 Olea europaea HOM05D004012 ORTHO05D004752 1.3e-103 380.9 294 65.3
SMO196G0070 Selaginella moellendorffii HOM05D004012 ORTHO05D004752 7.0e-102 375.2 280 67.9
Nitab4.5_0005261g0010 Nicotiana tabacum HOM05D004012 ORTHO05D004752 2.2e-100 370.2 281 67.6
Cc07_g20540 Coffea canephora HOM05D004012 ORTHO05D004752 1.1e-94 351.3 353 55.5
BcaC04g18693 Brassica carinata HOM05D004012 ORTHO05D004752 5.9e-93 345.5 440 48.4
AagrBONN_evm.TU.Sc2ySwM_228.2915 Anthoceros agrestis HOM05D004012 ORTHO05D004752 2.9e-92 343.2 329 52.0
Cpa.g.sc138.55 Carica papaya HOM05D004012 ORTHO05D004752 1.6e-90 337.4 232 70.7
Lju41A56G29 Lonicera japonica HOM05D004012 ORTHO05D004752 4.7e-90 335.9 368 52.2
Ah.06g188310 Amaranthus hybridus HOM05D004012 ORTHO05D004752 6.3e-79 298.9 214 68.2
Nitab4.5_0000064g0100 Nicotiana tabacum HOM05D004012 ORTHO05D004752 8.6e-76 288.5 177 83.1
Nitab4.5_0005261g0020 Nicotiana tabacum HOM05D004012 ORTHO05D004752 1.9e-75 287.3 156 92.3
Peaxi162Scf00621g00413 Petunia axillaris HOM05D004012 ORTHO05D004752 7.3e-75 285.4 155 92.9
Solyc04g024510.3 Solanum lycopersicum HOM05D004012 ORTHO05D004752 2.1e-74 283.9 157 91.7
QL10p034897 Quercus lobata HOM05D004012 ORTHO05D004752 4.0e-73 279.6 164 79.9
Haze_19373 Corylus avellana HOM05D004012 ORTHO05D004752 7.5e-72 275.4 157 89.8
HPP92_005645 Vanilla planifolia HOM05D004012 ORTHO05D004752 7.0e-70 268.9 145 94.5
Zm00001eb138450 Zea mays HOM05D004012 ORTHO05D004752 9.2e-70 268.5 277 51.6
SEGI_14103 Sequoiadendron giganteum HOM05D004012 ORTHO05D004752 1.2e-69 268.1 156 86.5
Cre17.g726800 Chlamydomonas reinhardtii HOM05D004012 ORTHO05D004752 1.7e-68 264.2 510 38.8
HPP92_005646 Vanilla planifolia HOM05D004012 ORTHO05D004752 3.6e-66 256.5 235 58.3
Os12g0197900 Oryza sativa ssp. japonica HOM05D004012 ORTHO05D004752 7.1e-62 242.3 141 86.5
PGSC0003DMG402004242 Solanum tuberosum HOM05D004012 ORTHO05D004752 6.6e-60 235.7 133 91.0
Lsat_1_v5_gn_2_19540 Lactuca sativa HOM05D004012 ORTHO05D004752 4.7e-58 229.6 182 67.0
THA.LOC104799828 Tarenaya hassleriana HOM05D004012 ORTHO05D004752 1.4e-57 228.0 184 65.8
HPP92_005679 Vanilla planifolia HOM05D004012 ORTHO05D004752 4.9e-55 219.5 309 45.0
DCAR_015558 Daucus carota HOM05D004012 ORTHO05D004752 4.6e-53 213.0 122 87.7
SHI03102 Sapria himalayana HOM05D004012 ORTHO05D004752 2.1e-50 204.1 156 62.8
TPR.G34339 Trifolium pratense HOM05D004012 ORTHO05D004752 3.1e-49 200.3 468 32.9
BcaNung06869 Brassica carinata HOM05D004012 ORTHO05D004752 2.6e-48 197.2 132 81.1
Cpa.g.sc138.54 Carica papaya HOM05D004012 ORTHO05D004752 1.6e-42 177.9 99 91.9
SHI03103 Sapria himalayana HOM05D004012 ORTHO05D004752 2.0e-40 171.0 178 56.7
QL10p034885 Quercus lobata HOM05D004012 ORTHO05D000004 4.4e-40 169.9 106 81.1
Haze_27454 Corylus avellana HOM05D004012 ORTHO05D004752 1.6e-37 161.4 129 62.8
QL10p034900 Quercus lobata HOM05D004012 ORTHO05D004752 1.6e-34 151.4 117 66.7
Lju41A56T30 Lonicera japonica HOM05D004012 ORTHO05D004752 4.5e-32 143.3 146 54.8
Actinidia12240 Actinidia chinensis HOM05D004012 ORTHO05D004752 7.6e-32 142.5 99 70.7
A03p08840 Brassica napus HOM05D004012 ORTHO05D004752 1.1e-22 112.1 68 85.3
MCO14G229 Micromonas commoda HOM05D004012 ORTHO05D004752 1.1e-22 112.1 215 36.3
Oeu046377.1 Olea europaea HOM05D004012 ORTHO05D004752 2.7e-21 107.5 56 98.2
Ciclev10006318m.g Citrus clementina HOM05D004012 ORTHO05D004752 3.0e-20 104.0 58 91.4
Actinidia20627 Actinidia chinensis HOM05D004012 ORTHO05D004752 1.5e-16 91.7 78 62.8
PRCOL_00001851 Prasinoderma coloniale HOM05D004012 ORTHO05D004752 1.1e-14 85.5 197 32.5
PSO761G0569 Papaver somniferum HOM05D004012 ORTHO05D004752 7.9e-13 79.3 57 68.4
VMungo0647G1024 Vigna mungo HOM05D004443 ORTHO05D005421 6.7e-12 76.3 66 54.5
Cc07_g20530 Coffea canephora HOM05D004012 ORTHO05D004752 2.2e-07 61.2 50 64.0


User provided reference genes

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