Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv19006 Davidia involucrata HOM05D005540 ORTHO05D006932 1.2e-180 636.3 321 100.0
Dinv14871 Davidia involucrata HOM05D005540 ORTHO05D006932 9.5e-149 530.4 295 91.5
CSS0010845 Camellia sinensis var. sinensis HOM05D005540 ORTHO05D006932 7.8e-143 510.8 295 88.1
Atru.chr4.1672 Acer truncatum HOM05D005540 ORTHO05D006932 4.4e-138 495.0 286 86.4
Actinidia39198 Actinidia chinensis HOM05D005540 ORTHO05D006932 1.1e-136 490.3 296 84.5
CiPaw.03G067900 Carya illinoinensis HOM05D005540 ORTHO05D006932 5.4e-136 488.0 294 84.4
TAR629G0151 Trochodendron aralioides HOM05D005540 ORTHO05D006932 5.4e-136 488.0 295 83.4
Cfa007847 Carpinus fangiana HOM05D005540 ORTHO05D006932 1.7e-134 483.0 295 82.7
Potri.017G129000 Populus trichocarpa HOM05D005540 ORTHO05D006932 6.6e-134 481.1 295 82.4
TWI77G0639 Tripterygium wilfordii HOM05D005540 ORTHO05D006932 1.3e-132 476.9 302 80.5
Ciclev10012086m.g Citrus clementina HOM05D005540 ORTHO05D006932 1.1e-131 473.8 276 87.7
VMungo1383G3344 Vigna mungo HOM05D005540 ORTHO05D006932 1.4e-131 473.4 280 85.0
Solyc02g091340.4 Solanum lycopersicum HOM05D005540 ORTHO05D006932 2.4e-131 472.6 296 81.8
Sopen02g035960 Solanum pennellii HOM05D005540 ORTHO05D006932 2.4e-131 472.6 296 81.8
THA.LOC104822414 Tarenaya hassleriana HOM05D005540 ORTHO05D006932 2.4e-131 472.6 288 83.3
Lalb_Chr18g0053271 Lupinus albus HOM05D005540 ORTHO05D006932 1.2e-130 470.3 280 83.9
Eucgr.F02818 Eucalyptus grandis HOM05D005540 ORTHO05D006932 1.5e-130 469.9 264 88.3
Manes.07G054300 Manihot esculenta HOM05D005540 ORTHO05D006932 2.0e-130 469.5 299 80.6
PGR004G0611 Punica granatum HOM05D005540 ORTHO05D006932 7.6e-130 467.6 274 85.4
TPR.G3482 Trifolium pratense HOM05D005540 ORTHO05D006932 7.6e-130 467.6 274 84.3
CANSAT78G2033 Cannabis sativa HOM05D005540 ORTHO05D006932 9.9e-130 467.2 276 85.5
LjContig00141g0003223 Lotus japonicus HOM05D005540 ORTHO05D006932 9.9e-130 467.2 272 84.6
Phvul.001G232200 Phaseolus vulgaris HOM05D005540 ORTHO05D006932 9.9e-130 467.2 280 83.9
ECA232G3523 Erigeron canadensis HOM05D005540 ORTHO05D006932 1.7e-129 466.5 264 87.9
Medtr5g079730 Medicago truncatula HOM05D005540 ORTHO05D006932 1.7e-129 466.5 276 83.0
MSTRG.23613 Avicennia marina HOM05D005540 ORTHO05D006932 6.4e-129 464.5 289 83.0
Glyma.11G218700 Glycine max HOM05D005540 ORTHO05D006932 8.4e-129 464.2 291 80.8
Glyma.18G038600 Glycine max HOM05D005540 ORTHO05D006932 8.4e-129 464.2 279 83.5
Thecc.04G122100 Theobroma cacao HOM05D005540 ORTHO05D006932 1.1e-128 463.8 275 85.5
vmacro18057 Vaccinium macrocarpon HOM05D005540 ORTHO05D006932 1.1e-128 463.8 283 81.6
Nitab4.5_0004399g0070 Nicotiana tabacum HOM05D005540 ORTHO05D006932 1.9e-128 463.0 314 76.8
GSVIVG01030869001 Vitis vinifera HOM05D005540 ORTHO05D006932 1.9e-128 463.0 283 83.7
C04p44790 Brassica napus HOM05D005540 ORTHO05D006932 4.2e-128 461.8 272 84.9
BolC4t26053H Brassica oleracea HOM05D005540 ORTHO05D006932 5.4e-128 461.5 269 85.9
BraA04t16769Z Brassica rapa HOM05D005540 ORTHO05D006932 1.2e-127 460.3 272 84.6
BcaB06g27151 Brassica carinata HOM05D005540 ORTHO05D006932 1.6e-127 459.9 277 83.8
A04p11070 Brassica napus HOM05D005540 ORTHO05D006932 1.6e-127 459.9 269 85.5
Duzib138G0816 Durio zibethinus HOM05D005540 ORTHO05D006932 2.7e-127 459.1 281 83.3
Lj4A178T43 Lonicera japonica HOM05D005540 ORTHO05D006932 3.5e-127 458.8 317 77.3
Aqoxy3G00138 Aquilegia oxysepala HOM05D005540 ORTHO05D006932 4.6e-127 458.4 265 86.8
BcaC02g09619 Brassica carinata HOM05D005540 ORTHO05D006932 7.9e-127 457.6 263 86.7
CsaV3_3G021680 Cucumis sativus L. HOM05D005540 ORTHO05D006932 1.0e-126 457.2 265 84.9
RcHm_v2.0_Chr2g0122561 Rosa chinensis HOM05D005540 ORTHO05D006932 3.0e-126 455.7 272 84.9
Psat2g040920 Pisum sativum HOM05D005540 ORTHO05D006932 3.9e-126 455.3 269 83.6
Thhalv10027854m.g Eutrema salsugineum HOM05D005540 ORTHO05D006932 5.1e-126 454.9 263 85.9
COL.COLO4_15705 Corchorus olitorius HOM05D005540 ORTHO05D006932 1.5e-125 453.4 263 85.2
Cc07_g08210 Coffea canephora HOM05D005540 ORTHO05D006932 3.3e-125 452.2 300 78.0
Ca_05867_v3 Cicer arietinum L. HOM05D005540 ORTHO05D006932 4.3e-125 451.8 265 83.4
Gohir.D11G168100 Gossypium hirsutum HOM05D005540 ORTHO05D006932 5.6e-125 451.4 264 85.6
Gorai.007G179400 Gossypium raimondii HOM05D005540 ORTHO05D006932 5.6e-125 451.4 264 85.6
Sp7g04170 Schrenkiella parvula HOM05D005540 ORTHO05D006932 5.6e-125 451.4 263 85.6
CARHR214890 Cardamine hirsuta HOM05D005540 ORTHO05D006932 9.6e-125 450.7 286 80.4
Migut.H00866 Erythranthe guttata HOM05D005540 ORTHO05D006932 2.1e-124 449.5 263 84.4
Gohir.A11G161800 Gossypium hirsutum HOM05D005540 ORTHO05D006932 2.1e-124 449.5 264 85.6
CAN.G625.83 Capsicum annuum HOM05D005540 ORTHO05D006932 2.8e-124 449.1 296 79.1
Sed0009967 Sechium edule HOM05D005540 ORTHO05D006932 2.8e-124 449.1 265 83.4
AT5G37850 Arabidopsis thaliana HOM05D005540 ORTHO05D006932 4.8e-124 448.4 263 85.6
Carub.0007s3304 Capsella rubella HOM05D005540 ORTHO05D006932 8.1e-124 447.6 270 83.7
PSO017G2970 Papaver somniferum HOM05D005540 ORTHO05D006932 1.1e-123 447.2 280 80.7
AL7G46750 Arabidopsis lyrata HOM05D005540 ORTHO05D006932 2.4e-123 446.0 263 85.2
ClCG05G010900 Citrullus lanatus HOM05D005540 ORTHO05D006932 3.1e-123 445.7 275 81.5
arahy.Tifrunner.gnm1.ann1.32A9M8 Arachis hypogaea HOM05D005540 ORTHO05D006932 1.2e-122 443.7 289 78.5
Aa31LG9G17310 Aethionema arabicum HOM05D005540 ORTHO05D006932 5.8e-122 441.4 292 76.7
Sed0014193 Sechium edule HOM05D005540 ORTHO05D006932 7.6e-122 441.0 265 82.6
PSO478G5258 Papaver somniferum HOM05D005540 ORTHO05D006932 2.2e-121 439.5 280 80.4
FAN28G0493 Fragaria x ananassa HOM05D005540 ORTHO05D006932 6.4e-121 438.0 323 73.1
ATR0686G023 Amborella trichopoda HOM05D005540 ORTHO05D006932 5.5e-120 434.9 270 80.4
arahy.Tifrunner.gnm1.ann1.A8AWVV Arachis hypogaea HOM05D005540 ORTHO05D006932 1.8e-118 429.9 273 80.2
arahy.Tifrunner.gnm1.ann1.IJ36EI Arachis hypogaea HOM05D005540 ORTHO05D006932 2.3e-118 429.5 273 80.2
Prupe.3G158100 Prunus persica HOM05D005540 ORTHO05D006932 1.1e-117 427.2 286 78.3
Zm00001eb135500 Zea mays HOM05D005540 ORTHO05D006932 9.6e-117 424.1 263 78.7
Sabra17G0107500 Salix brachista HOM05D005540 ORTHO05D006932 1.6e-116 423.3 266 82.0
Lsat_1_v5_gn_0_4201 Lactuca sativa HOM05D005540 ORTHO05D006932 4.0e-115 418.7 288 77.4
Nitab4.5_0002248g0040 Nicotiana tabacum HOM05D005540 ORTHO05D006932 4.0e-115 418.7 320 71.2
Os12g0600400 Oryza sativa ssp. japonica HOM05D005540 ORTHO05D006932 4.0e-115 418.7 263 77.9
SEGI_01535 Sequoiadendron giganteum HOM05D005540 ORTHO05D006932 1.9e-112 409.8 282 74.1
EL10Ac2g04488 Beta vulgaris HOM05D005540 ORTHO05D006932 2.5e-112 409.5 275 75.6
unitig_0.g2608 Utricularia gibba HOM05D005540 ORTHO05D006932 5.5e-112 408.3 283 76.0
Sc14g0004860 Simmondsia chinensis HOM05D005540 ORTHO05D006932 1.2e-111 407.1 259 79.9
Duzib133G1255 Durio zibethinus HOM05D005540 ORTHO05D006932 3.5e-111 405.6 259 80.3
Lsat_1_v5_gn_4_154720 Lactuca sativa HOM05D005540 ORTHO05D006932 1.8e-110 403.3 301 71.4
FvH4_1g24900 Fragaria vesca HOM05D005540 ORTHO05D006932 3.9e-110 402.1 240 85.0
HPP92_024102 Vanilla planifolia HOM05D005540 ORTHO05D006932 4.3e-109 398.7 310 67.1
CDE06G0494 Ceratophyllum demersum HOM05D005540 ORTHO05D006932 9.7e-109 397.5 269 75.8
Pp3c7_20600 Physcomitrium patens HOM05D005540 ORTHO05D006932 6.3e-108 394.8 266 74.1
Rhsim08G0085100 Rhododendron simsii HOM05D005540 ORTHO05D006932 3.1e-107 392.5 455 51.6
CDE04G3097 Ceratophyllum demersum HOM05D005540 ORTHO05D006932 1.7e-105 386.7 298 68.8
Peaxi162Scf00803g00528 Petunia axillaris HOM05D005540 ORTHO05D006932 1.7e-105 386.7 278 73.4
FAN23G2620 Fragaria x ananassa HOM05D005540 ORTHO05D006932 6.5e-105 384.8 274 75.2
MD12G1075700 Malus domestica HOM05D005540 ORTHO05D006932 8.5e-105 384.4 280 72.9
Pp3c11_8570 Physcomitrium patens HOM05D005540 ORTHO05D006932 1.2e-103 380.6 274 68.6
Sed0021451 Sechium edule HOM05D005540 ORTHO05D006932 4.6e-103 378.6 265 72.1
QL11p004195 Quercus lobata HOM05D005540 ORTHO05D006932 3.0e-102 375.9 376 56.9
Hma1.2p1_0283F.1_g113550 Hydrangea macrophylla HOM05D005540 ORTHO05D006932 4.8e-100 368.6 295 69.5
Atru.BG.179.p Acer truncatum HOM05D005540 ORTHO05D006932 4.5e-98 362.1 273 71.8
Mapoly0043s0025 Marchantia polymorpha HOM05D005540 ORTHO05D006932 7.7e-98 361.3 274 67.2
AagrBONN_evm.TU.Sc2ySwM_344.3276 Anthoceros agrestis HOM05D005540 ORTHO05D006932 2.9e-97 359.4 262 67.6
SMO117G0213 Selaginella moellendorffii HOM05D005540 ORTHO05D006932 2.0e-93 346.7 273 64.5
SGA_v2.0_scaffold49G18144 Striga asiatica HOM05D005540 ORTHO05D006932 6.3e-92 341.7 208 82.2
Ah.10g037980 Amaranthus hybridus HOM05D005540 ORTHO05D006932 1.2e-90 337.4 263 68.1
Sed0017329 Sechium edule HOM05D005540 ORTHO05D006932 1.3e-89 334.0 228 71.9
HPP92_024131 Vanilla planifolia HOM05D005540 ORTHO05D006932 1.2e-87 327.4 210 77.6
Nn4g24119 Nelumbo nucifera HOM05D005540 ORTHO05D006932 2.5e-80 303.1 291 57.0
MCO05G093 Micromonas commoda HOM05D005540 ORTHO05D006932 1.6e-79 300.4 262 58.0
SalBow3G0445 Salvia bowleyana HOM05D005540 ORTHO05D006932 3.0e-78 296.2 211 72.0
MBI16_g05922_MAGBIO Magnolia biondii HOM05D005540 ORTHO05D006932 3.1e-75 286.2 200 73.0
DCAR_025877 Daucus carota HOM05D005540 ORTHO05D006932 5.3e-75 285.4 175 82.3
Haze_14219 Corylus avellana HOM05D005540 ORTHO05D006932 8.8e-70 268.1 225 66.2
AUR62023244 Chenopodium quinoa HOM05D005540 ORTHO05D006932 5.9e-66 255.4 263 55.1
Cre03.g173800 Chlamydomonas reinhardtii HOM05D005540 ORTHO05D006932 6.8e-62 241.9 259 51.4
Hund16203 Selenicereus undatus HOM05D005540 ORTHO05D006932 2.0e-61 240.4 140 84.3
CBR_g12736 Chara braunii HOM05D005540 ORTHO05D006932 3.4e-61 239.6 176 69.3
Oeu030810.1 Olea europaea HOM05D005540 ORTHO05D006932 5.9e-58 228.8 157 76.4
Nn3g18203 Nelumbo nucifera HOM05D005540 ORTHO05D006932 1.0e-57 228.0 120 90.0
SGA_v2.0_scaffold6G03270 Striga asiatica HOM05D005540 ORTHO05D006932 1.7e-57 227.3 133 82.7
Cpa.g.sc116.26 Carica papaya HOM05D005540 ORTHO05D006932 4.4e-53 212.6 120 87.5
Migut.H00263 Erythranthe guttata HOM05D005540 ORTHO05D006932 3.9e-49 199.5 114 84.2
FAN26G0473 Fragaria x ananassa HOM05D005540 ORTHO05D006932 6.6e-49 198.7 421 35.2
SHI09520 Sapria himalayana HOM05D005540 ORTHO05D006932 2.1e-42 177.2 113 80.5
Cpa.g.sc116.24 Carica papaya HOM05D005540 ORTHO05D006932 3.3e-40 169.9 100 82.0
Hund16202 Selenicereus undatus HOM05D005540 ORTHO05D006932 4.6e-34 149.4 188 48.9
PRCOL_00006483 Prasinoderma coloniale HOM05D005540 ORTHO05D006932 3.0e-33 146.7 229 36.2
Atru.chr4.2426 Acer truncatum HOM05D005540 ORTHO05D006932 2.0e-29 134.0 66 95.5
Haze_26639 Corylus avellana HOM05D005540 ORTHO05D006932 2.9e-28 130.2 250 33.2
Hma1.2p1_0179F.1_g079120 Hydrangea macrophylla HOM05D005540 ORTHO05D006932 3.9e-25 119.8 64 90.6
SalBow3G4194 Salvia bowleyana HOM05D005540 ORTHO05D006932 5.1e-25 119.4 75 84.0
FAN26G3341 Fragaria x ananassa HOM05D005540 ORTHO05D006932 1.9e-24 117.5 58 96.6
Cfa022314 Carpinus fangiana HOM05D005540 ORTHO05D006932 4.3e-24 116.3 221 32.1
AUR62023196 Chenopodium quinoa HOM05D005540 ORTHO05D006932 1.3e-23 114.8 56 96.4
MELO3C031731.2 Cucumis melo HOM05D005540 ORTHO05D006932 2.1e-23 114.0 63 84.1
MELO3C020384.2 Cucumis melo HOM05D005540 ORTHO05D006932 6.9e-22 109.0 70 71.4
Nn3g18202 Nelumbo nucifera HOM05D005540 ORTHO05D006932 1.1e-19 101.7 55 83.6
SHI09525 Sapria himalayana HOM05D005540 ORTHO05D006932 4.2e-19 99.8 67 76.1
arahy.Tifrunner.gnm1.ann1.XYVL4V Arachis hypogaea HOM05D005540 ORTHO05D023714 1.1e-11 75.1 43 81.4
Hma1.2p1_0179F.1_g079130 Hydrangea macrophylla HOM05D005540 ORTHO05D006932 2.1e-10 70.9 33 93.9
SHI09501 Sapria himalayana HOM05D005540 ORTHO05D006932 3.3e-08 63.5 55 60.0
unitig_748.g8492 Utricularia gibba HOM05D005540 ORTHO05D425961 1.3e-07 61.6 99 42.4
SEGI_04261 Sequoiadendron giganteum HOM05D005540 ORTHO05D006932 2.8e-07 60.5 36 77.8


User provided reference genes

Program Settings