Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv18636 Davidia involucrata HOM05D004013 ORTHO05D004710 3.3e-186 654.8 317 100.0
Dinv28066 Davidia involucrata HOM05D004013 ORTHO05D004710 8.5e-166 587.0 317 90.2
Hma1.2p1_0940F.1_g239620 Hydrangea macrophylla HOM05D004013 ORTHO05D004710 6.1e-156 554.3 317 83.9
MD00G1055200 Malus domestica HOM05D004013 ORTHO05D004710 2.3e-155 552.4 317 80.8
MD07G1000400 Malus domestica HOM05D004013 ORTHO05D004710 4.4e-154 548.1 317 80.4
Prupe.2G000200 Prunus persica HOM05D004013 ORTHO05D004710 2.8e-153 545.4 317 80.8
CSS0003826 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 2.0e-151 539.3 319 82.1
CSS0048139 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 5.9e-151 537.7 319 81.8
CiPaw.09G068100 Carya illinoinensis HOM05D004013 ORTHO05D004710 2.1e-148 529.3 317 79.5
Atru.chr3.2025 Acer truncatum HOM05D004013 ORTHO05D004710 1.8e-147 526.2 317 81.1
GSVIVG01003913001 Vitis vinifera HOM05D004013 ORTHO05D004710 4.0e-147 525.0 319 80.3
COL.COLO4_06916 Corchorus olitorius HOM05D004013 ORTHO05D004710 7.5e-146 520.8 317 78.5
Cfa000589 Carpinus fangiana HOM05D004013 ORTHO05D004710 2.2e-145 519.2 317 77.9
QL05p046231 Quercus lobata HOM05D004013 ORTHO05D004710 6.3e-145 517.7 316 77.8
Duzib264G0158 Durio zibethinus HOM05D004013 ORTHO05D004710 2.7e-143 512.3 317 77.3
Gohir.D12G001900 Gossypium hirsutum HOM05D004013 ORTHO05D004710 5.9e-143 511.1 317 77.0
Gohir.A12G002200 Gossypium hirsutum HOM05D004013 ORTHO05D004710 7.7e-143 510.8 317 77.0
Duzib147G1378 Durio zibethinus HOM05D004013 ORTHO05D004710 1.0e-142 510.4 317 77.3
Manes.01G009000 Manihot esculenta HOM05D004013 ORTHO05D004710 2.2e-142 509.2 317 76.7
Thecc.01G234100 Theobroma cacao HOM05D004013 ORTHO05D004710 2.9e-142 508.8 317 77.0
Gorai.008G001300 Gossypium raimondii HOM05D004013 ORTHO05D004710 1.1e-141 506.9 317 76.0
CiPaw.10G057600 Carya illinoinensis HOM05D004013 ORTHO05D004710 1.9e-141 506.1 317 76.0
Lj6A740G51 Lonicera japonica HOM05D004013 ORTHO05D004710 3.2e-141 505.4 323 77.7
Potri.017G000500 Populus trichocarpa HOM05D004013 ORTHO05D004710 4.2e-141 505.0 317 76.3
CANSAT78G0639 Cannabis sativa HOM05D004013 ORTHO05D004710 1.6e-140 503.1 317 75.1
Potri.007G147100 Populus trichocarpa HOM05D004013 ORTHO05D004710 4.7e-140 501.5 317 76.7
vmacro09116 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 8.0e-140 500.7 317 74.1
TAR633G1686 Trochodendron aralioides HOM05D004013 ORTHO05D004710 2.3e-139 499.2 323 74.6
DCAR_023584 Daucus carota HOM05D004013 ORTHO05D004710 1.5e-138 496.5 317 75.4
Ciclev10019906m.g Citrus clementina HOM05D004013 ORTHO05D004710 2.0e-138 496.1 317 76.0
Lj3C865T7 Lonicera japonica HOM05D004013 ORTHO05D004710 7.5e-138 494.2 317 76.0
CsaV3_2G011360 Cucumis sativus L. HOM05D004013 ORTHO05D004710 1.8e-136 489.6 317 75.7
Eucgr.K03157 Eucalyptus grandis HOM05D004013 ORTHO05D004710 7.0e-136 487.6 317 72.6
CSS0004368 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 9.2e-136 487.3 311 76.5
MELO3C008520.2 Cucumis melo HOM05D004013 ORTHO05D004710 3.5e-135 485.3 319 74.6
TWI15G0551 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 4.5e-135 485.0 317 74.1
Cpa.g.sc9.235 Carica papaya HOM05D004013 ORTHO05D004710 7.7e-135 484.2 317 71.9
Oeu011024.1 Olea europaea HOM05D004013 ORTHO05D004710 2.3e-134 482.6 317 72.9
TWI63G0479 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 5.0e-134 481.5 317 73.5
TAR365G0341 Trochodendron aralioides HOM05D004013 ORTHO05D004710 2.8e-132 475.7 319 73.4
Sed0016347 Sechium edule HOM05D004013 ORTHO05D004710 4.7e-132 474.9 319 73.0
Rhsim09G0091900 Rhododendron simsii HOM05D004013 ORTHO05D004710 1.8e-131 473.0 384 63.0
Nitab4.5_0005132g0050 Nicotiana tabacum HOM05D004013 ORTHO05D004710 2.3e-131 472.6 317 70.7
Nitab4.5_0001568g0070 Nicotiana tabacum HOM05D004013 ORTHO05D004710 8.9e-131 470.7 317 70.7
ECA232G0201 Erigeron canadensis HOM05D004013 ORTHO05D004710 2.0e-130 469.5 317 73.2
Migut.L00578 Erythranthe guttata HOM05D004013 ORTHO05D004710 2.0e-130 469.5 318 73.0
Migut.L00278 Erythranthe guttata HOM05D004013 ORTHO05D004710 4.4e-130 468.4 318 72.6
HanXRQChr08g0212421 Helianthus annuus HOM05D004013 ORTHO05D004710 1.7e-129 466.5 317 71.9
HanXRQChr12g0363401 Helianthus annuus HOM05D004013 ORTHO05D004710 1.7e-129 466.5 317 72.2
Hund22667 Selenicereus undatus HOM05D004013 ORTHO05D004710 2.2e-129 466.1 317 71.3
Lsat_1_v5_gn_8_45601 Lactuca sativa HOM05D004013 ORTHO05D004710 8.3e-129 464.2 317 73.2
Peaxi162Scf00441g00621 Petunia axillaris HOM05D004013 ORTHO05D004710 1.1e-128 463.8 306 71.2
Lj1g0014615 Lotus japonicus HOM05D004013 ORTHO05D004710 1.4e-128 463.4 317 71.6
VMungo1383G0353 Vigna mungo HOM05D004013 ORTHO05D004710 1.4e-128 463.4 318 71.7
ECA233G0032 Erigeron canadensis HOM05D004013 ORTHO05D004710 2.4e-128 462.6 317 71.6
TPR.G29111 Trifolium pratense HOM05D004013 ORTHO05D004710 4.1e-128 461.8 317 71.0
Medtr7g081230 Medicago truncatula HOM05D004013 ORTHO05D004710 1.2e-127 460.3 317 70.7
CAN.G140.48 Capsicum annuum HOM05D004013 ORTHO05D004710 1.6e-127 459.9 345 66.4
PSO732G0206 Papaver somniferum HOM05D004013 ORTHO05D004710 1.6e-127 459.9 320 70.6
MSTRG.23493 Avicennia marina HOM05D004013 ORTHO05D004710 4.6e-127 458.4 317 71.3
arahy.Tifrunner.gnm1.ann1.M4STP7 Arachis hypogaea HOM05D004013 ORTHO05D004710 1.0e-126 457.2 317 70.3
FvH4_2g06800 Fragaria vesca HOM05D004013 ORTHO05D004710 1.3e-126 456.8 333 68.8
Glyma.09G244800 Glycine max HOM05D004013 ORTHO05D004710 1.7e-126 456.4 318 72.0
FAN24G3388 Fragaria x ananassa HOM05D004013 ORTHO05D004710 2.3e-126 456.1 333 68.5
PSO675G0050 Papaver somniferum HOM05D004013 ORTHO05D004710 2.3e-126 456.1 320 69.1
PGR142G2472 Punica granatum HOM05D004013 ORTHO05D004710 2.3e-126 456.1 318 71.7
Sopen01g002230 Solanum pennellii HOM05D004013 ORTHO05D004710 3.0e-126 455.7 346 65.3
Phvul.008G048900 Phaseolus vulgaris HOM05D004013 ORTHO05D004710 3.9e-126 455.3 318 70.4
Glyma.18G248400 Glycine max HOM05D004013 ORTHO05D004710 5.0e-126 454.9 318 72.3
Solyc01g006230.3 Solanum lycopersicum HOM05D004013 ORTHO05D004710 6.6e-126 454.5 346 65.0
FAN27G1923 Fragaria x ananassa HOM05D004013 ORTHO05D004710 1.9e-125 453.0 333 68.2
PGSC0003DMG400032144 Solanum tuberosum HOM05D004013 ORTHO05D004710 1.9e-125 453.0 346 64.7
arahy.Tifrunner.gnm1.ann1.LVD0DC Arachis hypogaea HOM05D004013 ORTHO05D004710 4.3e-125 451.8 317 70.0
MBI15_g08971_MAGBIO Magnolia biondii HOM05D004013 ORTHO05D004710 5.6e-125 451.4 331 69.2
RcHm_v2.0_Chr6g0259021 Rosa chinensis HOM05D004013 ORTHO05D004710 7.3e-125 451.1 329 69.3
Ca_08048_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 9.5e-125 450.7 318 70.1
Ca_08054_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 9.5e-125 450.7 318 70.1
FAN20G2928 Fragaria x ananassa HOM05D004013 ORTHO05D004710 2.1e-124 449.5 333 67.9
Lalb_Chr01g0021691 Lupinus albus HOM05D004013 ORTHO05D004710 1.0e-123 447.2 318 69.2
FAN15G0687 Fragaria x ananassa HOM05D004013 ORTHO05D004710 1.8e-123 446.4 312 70.8
Psat0s3112g0040 Pisum sativum HOM05D004013 ORTHO05D004710 4.0e-123 445.3 317 68.8
SGA_v2.0_scaffold3G01797 Striga asiatica HOM05D004013 ORTHO05D004710 2.6e-122 442.6 319 69.0
arahy.Tifrunner.gnm1.ann1.ERJ0Z2 Arachis hypogaea HOM05D004013 ORTHO05D004710 3.4e-122 442.2 328 67.4
AUR62023683 Chenopodium quinoa HOM05D004013 ORTHO05D004710 3.7e-121 438.7 317 68.5
Nn1g09391 Nelumbo nucifera HOM05D004013 ORTHO05D004710 4.9e-121 438.3 266 78.9
Aa31LG1G25800 Aethionema arabicum HOM05D004013 ORTHO05D004710 1.4e-120 436.8 317 66.6
AUR62002510 Chenopodium quinoa HOM05D004013 ORTHO05D004710 1.9e-120 436.4 339 65.8
SGA_v2.0_scaffold37G14795 Striga asiatica HOM05D004013 ORTHO05D004710 2.4e-120 436.0 319 67.7
Lalb_Chr03g0040611 Lupinus albus HOM05D004013 ORTHO05D004710 9.2e-120 434.1 317 67.2
Os04g0682000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 6.0e-119 431.4 319 66.1
ATR0706G248 Amborella trichopoda HOM05D004013 ORTHO05D004710 7.8e-119 431.0 326 67.2
DCAR_026793 Daucus carota HOM05D004013 ORTHO05D004710 1.0e-118 430.6 318 68.2
SalBow7G0073 Salvia bowleyana HOM05D004013 ORTHO05D004710 3.9e-118 428.7 368 61.7
Sp4g26220 Schrenkiella parvula HOM05D004013 ORTHO05D004710 1.1e-117 427.2 317 65.3
AL4G43020 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 5.6e-117 424.9 317 64.0
Ah.07g203370 Amaranthus hybridus HOM05D004013 ORTHO05D004710 9.5e-117 424.1 317 65.9
Haze_06261 Corylus avellana HOM05D004013 ORTHO05D004710 1.6e-116 423.3 557 44.3
EL10Ac3g06192 Beta vulgaris HOM05D004013 ORTHO05D004710 2.1e-116 422.9 343 61.5
Thhalv10001432m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 4.7e-116 421.8 317 64.4
Sp5g03230 Schrenkiella parvula HOM05D004013 ORTHO05D004710 8.1e-116 421.0 317 64.0
Oeu034368.2 Olea europaea HOM05D004013 ORTHO05D004710 1.8e-115 419.9 436 53.0
AT2G44140 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 3.1e-115 419.1 317 63.7
Os03g0391000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 3.1e-115 419.1 319 66.1
Zm00001eb065800 Zea mays HOM05D004013 ORTHO05D004710 5.2e-115 418.3 319 64.3
AL5G42130 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 8.9e-115 417.5 317 63.1
arahy.Tifrunner.gnm1.ann1.AL59ZJ Arachis hypogaea HOM05D004013 ORTHO05D004710 8.9e-115 417.5 317 66.2
Ah.13g073110 Amaranthus hybridus HOM05D004013 ORTHO05D004710 1.2e-114 417.2 310 65.2
C04p32840 Brassica napus HOM05D004013 ORTHO05D004710 2.0e-114 416.4 319 63.3
Zm00001eb433950 Zea mays HOM05D004013 ORTHO05D004710 4.4e-114 415.2 324 63.6
BcaB02g08204 Brassica carinata HOM05D004013 ORTHO05D004710 5.8e-114 414.8 317 61.8
BcaC02g10096 Brassica carinata HOM05D004013 ORTHO05D004710 7.5e-114 414.5 317 62.8
BolC4t24846H Brassica oleracea HOM05D004013 ORTHO05D004710 7.5e-114 414.5 317 62.8
Thhalv10005940m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 1.7e-113 413.3 317 63.1
vmacro10687 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 2.2e-113 412.9 388 55.9
AT3G59950 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 2.9e-113 412.5 317 62.5
CARHR139300 Cardamine hirsuta HOM05D004013 ORTHO05D004710 1.9e-112 409.8 317 62.1
CARHR170260 Cardamine hirsuta HOM05D004013 ORTHO05D004710 3.2e-112 409.1 317 62.1
A09p52290 Brassica napus HOM05D004013 ORTHO05D004710 4.1e-112 408.7 320 62.5
BraA09t40658Z Brassica rapa HOM05D004013 ORTHO05D004710 4.1e-112 408.7 320 62.5
CDE04G0030 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 5.4e-112 408.3 319 65.2
BraA04t15923Z Brassica rapa HOM05D004013 ORTHO05D004710 7.1e-112 407.9 319 62.7
Carub.0004s2669 Capsella rubella HOM05D004013 ORTHO05D004710 1.2e-111 407.1 317 61.5
CDE06G1594 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 1.2e-111 407.1 319 64.9
BcaC07g40539 Brassica carinata HOM05D004013 ORTHO05D004710 1.6e-111 406.8 320 62.2
BcaC07g40400 Brassica carinata HOM05D004013 ORTHO05D004710 6.0e-111 404.8 317 62.8
A04p01980 Brassica napus HOM05D004013 ORTHO05D004710 1.0e-110 404.1 320 62.2
BcaB02g08917 Brassica carinata HOM05D004013 ORTHO05D004710 1.3e-110 403.7 322 62.7
HPP92_020809 Vanilla planifolia HOM05D004013 ORTHO05D004710 1.1e-109 400.6 323 63.2
BolC8t51099H Brassica oleracea HOM05D004013 ORTHO05D004710 1.5e-109 400.2 325 60.6
Carub.0005s2667 Capsella rubella HOM05D004013 ORTHO05D004710 1.9e-109 399.8 274 66.4
SHI01175 Sapria himalayana HOM05D004013 ORTHO05D004710 1.9e-109 399.8 318 62.6
BcaC02g12335 Brassica carinata HOM05D004013 ORTHO05D004710 2.5e-109 399.4 321 62.3
C04p05030 Brassica napus HOM05D004013 ORTHO05D004710 2.5e-109 399.4 321 62.3
BolC4t22136H Brassica oleracea HOM05D004013 ORTHO05D004710 2.5e-109 399.4 321 62.3
unitig_748.g8760 Utricularia gibba HOM05D004013 ORTHO05D004710 8.1e-108 394.4 319 62.7
A05p04250 Brassica napus HOM05D004013 ORTHO05D004710 1.2e-106 390.6 322 61.2
BraA05t19410Z Brassica rapa HOM05D004013 ORTHO05D004710 1.5e-106 390.2 322 61.2
Pp3c11_22820 Physcomitrium patens HOM05D004013 ORTHO05D004710 6.6e-102 374.8 319 57.4
ClCG06G010000 Citrullus lanatus HOM05D004013 ORTHO05D004710 2.4e-96 356.3 200 83.5
SEGI_37986 Sequoiadendron giganteum HOM05D004013 ORTHO05D004710 5.4e-96 355.1 324 58.0
Sed0011939 Sechium edule HOM05D004013 ORTHO05D004710 7.1e-96 354.8 202 83.2
Actinidia29462 Actinidia chinensis HOM05D004013 ORTHO05D004710 7.8e-95 351.3 220 75.5
Mapoly0153s0038 Marchantia polymorpha HOM05D004013 ORTHO05D004710 7.8e-95 351.3 321 56.1
Pp3c7_280 Physcomitrium patens HOM05D004013 ORTHO05D004710 1.4e-91 340.5 319 51.1
Sc08g0007990 Simmondsia chinensis HOM05D004013 ORTHO05D004710 1.4e-83 313.9 202 74.3
SMO145G0104 Selaginella moellendorffii HOM05D004013 ORTHO05D004710 2.2e-81 306.6 270 56.3
THA.LOC104808419 Tarenaya hassleriana HOM05D004013 ORTHO05D004710 1.9e-80 303.5 199 70.9
Zm00001eb419970 Zea mays HOM05D004013 ORTHO05D004710 5.1e-78 295.4 202 69.3
C08p34940 Brassica napus HOM05D004013 ORTHO05D004710 5.3e-75 285.4 223 61.4
Oeu053147.1 Olea europaea HOM05D004013 ORTHO05D004710 2.5e-61 240.0 155 74.8
Oeu037862.1 Olea europaea HOM05D004013 ORTHO05D004710 1.2e-58 231.1 302 44.7
Actinidia36638 Actinidia chinensis HOM05D004013 ORTHO05D004710 1.5e-58 230.7 194 62.4
CBR_g21952 Chara braunii HOM05D004013 ORTHO05D004710 2.3e-54 216.9 294 42.2
Zm00001eb264230 Zea mays HOM05D004013 ORTHO05D004710 6.9e-51 205.3 202 53.5
PRCOL_00001711 Prasinoderma coloniale HOM05D004013 ORTHO05D004710 8.0e-39 165.2 373 33.0
unitig_32.g11897 Utricularia gibba HOM05D004013 ORTHO05D004710 4.0e-38 162.9 264 42.0
Peaxi162Scf00271g00518 Petunia axillaris HOM05D004013 ORTHO05D004710 2.4e-35 153.7 116 61.2
THA.LOC104804900 Tarenaya hassleriana HOM05D004013 ORTHO05D004710 1.2e-34 151.4 207 44.0
Sabra17G0005400 Salix brachista HOM05D004013 ORTHO05D004710 4.5e-34 149.4 107 69.2
Actinidia03474 Actinidia chinensis HOM05D004013 ORTHO05D004710 7.7e-34 148.7 132 57.6
Hma1.2p1_1910F.1_g307280 Hydrangea macrophylla HOM05D004013 ORTHO05D004710 3.8e-33 146.4 109 68.8
ClCG06G009970 Citrullus lanatus HOM05D004013 ORTHO05D004710 9.8e-29 131.7 102 62.7
Actinidia29461 Actinidia chinensis HOM05D004013 ORTHO05D004710 2.0e-26 124.0 78 73.1
MCO13G568 Micromonas commoda HOM05D004013 ORTHO05D004710 2.5e-24 117.1 122 47.5
arahy.Tifrunner.gnm1.ann1.MVA4LE Arachis hypogaea HOM05D004013 ORTHO05D004710 3.2e-24 116.7 123 52.8
Cre12.g510100 Chlamydomonas reinhardtii HOM05D004013 ORTHO05D004710 5.7e-21 105.9 213 32.9
arahy.Tifrunner.gnm1.ann1.AC7664 Arachis hypogaea HOM05D004013 ORTHO05D004710 1.0e-17 95.1 104 50.0
ATR0807G232 Amborella trichopoda HOM05D004013 ORTHO05D004710 1.3e-12 78.2 70 54.3
ATR0807G053 Amborella trichopoda HOM05D004013 ORTHO05D004710 5.0e-09 66.2 50 58.0
Atru.chr3.2624 Acer truncatum HOM05D004013 ORTHO05D004710 1.1e-06 58.5 36 77.8
CBR_g50173 Chara braunii HOM05D004013 ORTHO05D004710 3.1e-06 57.0 49 55.1


User provided reference genes

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