Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv17815 Davidia involucrata HOM05D060562 ORTHO05D011090 9.7e-101 370.2 189 100.0
Dinv13870 Davidia involucrata HOM05D060562 ORTHO05D011090 7.0e-83 310.8 160 98.8
Dinv17817 Davidia involucrata HOM05D000109 ORTHO05D000520 1.3e-15 87.4 53 86.8
Dinv13868 Davidia involucrata HOM05D000109 ORTHO05D011090 1.6e-15 87.0 82 61.0
CSS0006969 Camellia sinensis var. sinensis HOM05D000109 ORTHO05D011090 2.2e-12 76.6 64 65.6
CSS0040859 Camellia sinensis var. sinensis HOM05D000109 ORTHO05D000520 1.4e-11 73.9 64 62.5
Ciclev10014190m.g Citrus clementina HOM05D000109 ORTHO05D000520 1.2e-10 70.9 60 60.0
CSS0040314 Camellia sinensis var. sinensis HOM05D000109 ORTHO05D000520 1.6e-10 70.5 86 45.3
CSS0025862 Camellia sinensis var. sinensis HOM05D000109 ORTHO05D000520 2.1e-10 70.1 77 48.1
Nn1g03586 Nelumbo nucifera HOM05D000109 ORTHO05D000520 2.1e-10 70.1 87 47.1
Dinv05443 Davidia involucrata HOM05D000109 ORTHO05D000520 3.5e-10 69.3 61 55.7
PSO541G1253 Papaver somniferum HOM05D000109 ORTHO05D000520 3.5e-10 69.3 50 68.0
TAR629G2177 Trochodendron aralioides HOM05D000109 ORTHO05D000520 3.5e-10 69.3 51 64.7
Lj8A125T70 Lonicera japonica HOM05D000109 ORTHO05D000520 1.3e-09 67.4 60 53.3
MBI02_g15250_MAGBIO Magnolia biondii HOM05D000109 ORTHO05D000520 1.3e-09 67.4 71 56.3
MBI02_g15251_MAGBIO Magnolia biondii HOM05D000109 ORTHO05D000520 1.3e-09 67.4 71 56.3
PSO675G2504 Papaver somniferum HOM05D000109 ORTHO05D000520 1.3e-09 67.4 50 66.0
PGR142G1437 Punica granatum HOM05D000109 ORTHO05D000520 1.3e-09 67.4 51 58.8
Cc05_g04820 Coffea canephora HOM05D000109 ORTHO05D000520 2.3e-09 66.6 72 50.0
Phvul.005G114900 Phaseolus vulgaris HOM05D000109 ORTHO05D000520 2.3e-09 66.6 81 45.7
CiPaw.03G160600 Carya illinoinensis HOM05D000109 ORTHO05D000520 3.0e-09 66.2 54 61.1
Hma1.2p1_0328F.1_g126840 Hydrangea macrophylla HOM05D000109 ORTHO05D000520 3.9e-09 65.9 58 56.9
TWI36G1107 Tripterygium wilfordii HOM05D000109 ORTHO05D000520 3.9e-09 65.9 60 53.3
Hma1.2p1_0328F.1_g126820 Hydrangea macrophylla HOM05D000109 ORTHO05D000520 5.1e-09 65.5 45 66.7
DCAR_019277 Daucus carota HOM05D000109 ORTHO05D000520 6.7e-09 65.1 60 51.7
Atru.chr6.3174 Acer truncatum HOM05D000109 ORTHO05D011090 8.7e-09 64.7 59 52.5
CARHR126220 Cardamine hirsuta HOM05D000109 ORTHO05D000520 8.7e-09 64.7 46 69.6
Lalb_Chr14g0375791 Lupinus albus HOM05D000109 ORTHO05D000520 8.7e-09 64.7 61 50.8
Sed0004654 Sechium edule HOM05D000109 ORTHO05D000520 8.7e-09 64.7 60 53.3
CsaV3_2G035000 Cucumis sativus L. HOM05D000109 ORTHO05D000520 1.5e-08 63.9 50 60.0
AL4G27790 Arabidopsis lyrata HOM05D000109 ORTHO05D000520 1.9e-08 63.5 49 59.2
MELO3C019260.2 Cucumis melo HOM05D000109 ORTHO05D000520 1.9e-08 63.5 50 60.0
FAN02G3901 Fragaria x ananassa HOM05D000109 ORTHO05D000520 1.9e-08 63.5 59 54.2
Nn1g07094 Nelumbo nucifera HOM05D000109 ORTHO05D000520 1.9e-08 63.5 50 62.0
BcaB01g03980 Brassica carinata HOM05D000109 ORTHO05D000520 3.3e-08 62.8 49 63.3
SalBow1G8713 Salvia bowleyana HOM05D000109 ORTHO05D000520 3.3e-08 62.8 51 56.9
Sc21g0001470 Simmondsia chinensis HOM05D000109 ORTHO05D011090 3.3e-08 62.8 68 50.0
MSTRG.14150 Avicennia marina HOM05D000109 ORTHO05D000520 4.3e-08 62.4 60 48.3
Eucgr.K00798 Eucalyptus grandis HOM05D000109 ORTHO05D000520 4.3e-08 62.4 48 64.6
BcaB06g28590 Brassica carinata HOM05D000109 ORTHO05D000520 5.7e-08 62.0 74 48.6
FvH4_6g43290 Fragaria vesca HOM05D000109 ORTHO05D000520 5.7e-08 62.0 59 52.5
FAN14G5631 Fragaria x ananassa HOM05D000109 ORTHO05D000520 5.7e-08 62.0 59 52.5
Glyma.12G194100 Glycine max HOM05D000109 ORTHO05D000520 5.7e-08 62.0 61 47.5
FAN05G1414 Fragaria x ananassa HOM05D000109 ORTHO05D000520 7.4e-08 61.6 59 52.5
Sc21g0001510 Simmondsia chinensis HOM05D000109 ORTHO05D011090 7.4e-08 61.6 68 48.5
Thecc.02G313600 Theobroma cacao HOM05D000109 ORTHO05D000520 7.4e-08 61.6 60 50.0
A05p13170 Brassica napus HOM05D000109 ORTHO05D000520 9.7e-08 61.2 49 59.2
C04p17250 Brassica napus HOM05D000109 ORTHO05D000520 9.7e-08 61.2 49 59.2
BolC4t23277H Brassica oleracea HOM05D000109 ORTHO05D000520 9.7e-08 61.2 49 59.2
BraA05t20258Z Brassica rapa HOM05D000109 ORTHO05D000520 9.7e-08 61.2 49 59.2
Prupe.3G217900 Prunus persica HOM05D000109 ORTHO05D000520 9.7e-08 61.2 66 50.0
PGSC0003DMG400025500 Solanum tuberosum HOM05D000109 ORTHO05D000520 9.7e-08 61.2 67 47.8
Carub.0004s1375 Capsella rubella HOM05D000109 ORTHO05D000520 1.3e-07 60.8 50 58.0
Manes.12G075100 Manihot esculenta HOM05D000109 ORTHO05D000520 1.3e-07 60.8 50 54.0
Peaxi162Scf00007g00095 Petunia axillaris HOM05D000109 ORTHO05D000520 1.3e-07 60.8 60 48.3
QL08p033247 Quercus lobata HOM05D000109 ORTHO05D000520 1.3e-07 60.8 50 58.0
Sp4g14770 Schrenkiella parvula HOM05D000109 ORTHO05D000520 1.3e-07 60.8 49 61.2
VMungo1080G1845 Vigna mungo HOM05D000109 ORTHO05D000520 1.3e-07 60.8 76 43.4
Solyc07g052390.3 Solanum lycopersicum HOM05D000109 ORTHO05D000520 1.6e-07 60.5 83 41.0
AT2G32400 Arabidopsis thaliana HOM05D000109 ORTHO05D000520 2.2e-07 60.1 65 52.3
BcaB02g10471 Brassica carinata HOM05D000109 ORTHO05D000520 2.2e-07 60.1 49 57.1
BcaC02g11325 Brassica carinata HOM05D000109 ORTHO05D000520 2.2e-07 60.1 49 57.1
CSS0043106 Camellia sinensis var. sinensis HOM05D000109 ORTHO05D011090 2.2e-07 60.1 77 41.6
CDE05G3679 Ceratophyllum demersum HOM05D000109 ORTHO05D000520 2.2e-07 60.1 60 48.3
MBI18_g06565_MAGBIO Magnolia biondii HOM05D000109 ORTHO05D000520 2.2e-07 60.1 69 49.3
Nitab4.5_0007092g0020 Nicotiana tabacum HOM05D000109 ORTHO05D000520 2.2e-07 60.1 77 41.6
THA.LOC104800988 Tarenaya hassleriana HOM05D000109 ORTHO05D000520 2.2e-07 60.1 57 52.6
Thhalv10016204m.g Eutrema salsugineum HOM05D000109 ORTHO05D000520 2.8e-07 59.7 49 55.1
Glyma.13G308500 Glycine max HOM05D000109 ORTHO05D000520 2.8e-07 59.7 61 47.5
Os07g0522600 Oryza sativa ssp. japonica HOM05D000109 ORTHO05D000520 2.8e-07 59.7 69 43.5
Psat5g264120 Pisum sativum HOM05D000109 ORTHO05D000520 2.8e-07 59.7 65 47.7
CSS0007573 Camellia sinensis var. sinensis HOM05D000109 ORTHO05D011090 3.7e-07 59.3 71 45.1
MD17G1096200 Malus domestica HOM05D000109 ORTHO05D000520 3.7e-07 59.3 68 45.6
Rhsim10G0193100 Rhododendron simsii HOM05D000109 ORTHO05D000520 3.7e-07 59.3 67 46.3
Cpa.g.sc8.217 Carica papaya HOM05D000109 ORTHO05D000520 4.8e-07 58.9 50 56.0
Gohir.D13G088200 Gossypium hirsutum HOM05D000109 ORTHO05D000520 4.8e-07 58.9 60 45.0
Gorai.013G100700 Gossypium raimondii HOM05D000109 ORTHO05D000520 4.8e-07 58.9 60 45.0
MD09G1070000 Malus domestica HOM05D000109 ORTHO05D000520 4.8e-07 58.9 68 44.1
BcaC01g05906 Brassica carinata HOM05D000109 ORTHO05D000520 6.3e-07 58.5 49 59.2
C03p21190 Brassica napus HOM05D000109 ORTHO05D000520 6.3e-07 58.5 49 59.2
BolC3t14502H Brassica oleracea HOM05D000109 ORTHO05D000520 6.3e-07 58.5 49 59.2
COL.COLO4_27702 Corchorus olitorius HOM05D000109 ORTHO05D000520 6.3e-07 58.5 60 46.7
PSO675G1249 Papaver somniferum HOM05D000109 ORTHO05D000520 6.3e-07 58.5 82 39.0
Sabra02G0175600 Salix brachista HOM05D000109 ORTHO05D000520 6.3e-07 58.5 73 42.5
C04p61760 Brassica napus HOM05D000109 ORTHO05D000520 8.2e-07 58.2 49 57.1
BolC4t27660H Brassica oleracea HOM05D000109 ORTHO05D000520 8.2e-07 58.2 49 57.1
CSS0038675 Camellia sinensis var. sinensis HOM05D000109 ORTHO05D011090 8.2e-07 58.2 77 39.0
CAN.G846.9 Capsicum annuum HOM05D000109 ORTHO05D000520 8.2e-07 58.2 72 43.1
TAR629G3259 Trochodendron aralioides HOM05D000109 ORTHO05D000520 8.2e-07 58.2 66 48.5
arahy.Tifrunner.gnm1.ann1.V07PF1 Arachis hypogaea HOM05D000109 ORTHO05D000520 1.1e-06 57.8 108 37.0
A03p18160 Brassica napus HOM05D000109 ORTHO05D000520 1.1e-06 57.8 49 57.1
CiPaw.04G116500 Carya illinoinensis HOM05D000109 ORTHO05D000520 1.1e-06 57.8 81 39.5
Haze_12874 Corylus avellana HOM05D000109 ORTHO05D000520 1.1e-06 57.8 48 56.2
Dinv40199 Davidia involucrata HOM05D000109 ORTHO05D000520 1.1e-06 57.8 66 51.5
Sabra14G0115800 Salix brachista HOM05D000109 ORTHO05D000520 1.1e-06 57.8 59 49.2
Sed0002695 Sechium edule HOM05D000109 ORTHO05D000520 1.1e-06 57.8 50 54.0
CSS0019202 Camellia sinensis var. sinensis HOM05D000109 ORTHO05D000520 1.4e-06 57.4 75 41.3
ClCG02G001870 Citrullus lanatus HOM05D000109 ORTHO05D000520 1.4e-06 57.4 68 41.2
Medtr2g088430 Medicago truncatula HOM05D000109 ORTHO05D000520 1.4e-06 57.4 61 47.5
Oeu011089.1 Olea europaea HOM05D000109 ORTHO05D000520 1.4e-06 57.4 85 42.4
arahy.Tifrunner.gnm1.ann1.U5CYT6 Arachis hypogaea HOM05D000109 ORTHO05D000520 1.8e-06 57.0 50 52.0
arahy.Tifrunner.gnm1.ann1.W5RZU2 Arachis hypogaea HOM05D000109 ORTHO05D000520 1.8e-06 57.0 108 36.1
BraA03t11076Z Brassica rapa HOM05D000109 ORTHO05D000520 1.8e-06 57.0 46 60.9
Haze_03624 Corylus avellana HOM05D000109 ORTHO05D000520 1.8e-06 57.0 80 45.0
Dinv28313 Davidia involucrata HOM05D000109 ORTHO05D000520 1.8e-06 57.0 66 47.0
TWI36G1764 Tripterygium wilfordii HOM05D000109 ORTHO05D000520 1.8e-06 57.0 54 50.0
Gohir.D05G181500 Gossypium hirsutum HOM05D000109 ORTHO05D000520 2.4e-06 56.6 69 43.5
Gorai.009G186500 Gossypium raimondii HOM05D000109 ORTHO05D000520 2.4e-06 56.6 69 43.5
MBI12_g40210_MAGBIO Magnolia biondii HOM05D000109 ORTHO05D011090 2.4e-06 56.6 74 43.2
Manes.13G070500 Manihot esculenta HOM05D000109 ORTHO05D000520 2.4e-06 56.6 50 54.0
Sabra05G0196900 Salix brachista HOM05D000109 ORTHO05D000520 2.4e-06 56.6 75 42.7
Thecc.02G313500 Theobroma cacao HOM05D000109 ORTHO05D000520 2.4e-06 56.6 61 42.6
Duzib251G0761 Durio zibethinus HOM05D000109 ORTHO05D000520 3.1e-06 56.2 51 51.0
Gohir.A13G094200 Gossypium hirsutum HOM05D000109 ORTHO05D000520 3.1e-06 56.2 51 49.0
Lj3g0002322 Lotus japonicus HOM05D000109 ORTHO05D000520 3.1e-06 56.2 57 49.1
MD09G1107700 Malus domestica HOM05D000109 ORTHO05D011090 3.1e-06 56.2 73 45.2
Oeu041928.1 Olea europaea HOM05D000109 ORTHO05D000520 3.1e-06 56.2 75 41.3
Oeu041929.1 Olea europaea HOM05D000109 ORTHO05D000520 3.1e-06 56.2 75 41.3
Sed0011414 Sechium edule HOM05D000109 ORTHO05D000520 3.1e-06 56.2 50 52.0
Aa31LG5G4680 Aethionema arabicum HOM05D000109 ORTHO05D000520 4.1e-06 55.8 49 53.1
ATR0752G033 Amborella trichopoda HOM05D000109 ORTHO05D000520 4.1e-06 55.8 69 42.0
MD09G1069900 Malus domestica HOM05D000109 ORTHO05D000520 4.1e-06 55.8 66 45.5
Os07g0103100 Oryza sativa ssp. japonica HOM05D000109 ORTHO05D000520 4.1e-06 55.8 80 38.8
Prupe.3G217800 Prunus persica HOM05D000109 ORTHO05D000520 4.1e-06 55.8 37 67.6
Sp1g37300 Schrenkiella parvula HOM05D000109 ORTHO05D000520 4.1e-06 55.8 60 45.0
TPR.G4163 Trifolium pratense HOM05D000109 ORTHO05D000520 4.1e-06 55.8 49 55.1
TWI56G0649 Tripterygium wilfordii HOM05D000109 ORTHO05D000520 4.1e-06 55.8 54 46.3
Aqoxy1G03296 Aquilegia oxysepala HOM05D000109 ORTHO05D000520 5.3e-06 55.5 56 50.0
Cfa014414 Carpinus fangiana HOM05D000109 ORTHO05D000520 5.3e-06 55.5 50 52.0
Duzib251G0263 Durio zibethinus HOM05D000109 ORTHO05D000520 5.3e-06 55.5 51 51.0
HanXRQChr04g0127611 Helianthus annuus HOM05D000109 ORTHO05D000520 5.3e-06 55.5 50 52.0
MD09G1070100 Malus domestica HOM05D000109 ORTHO05D000520 5.3e-06 55.5 71 43.7
Nn1g03588 Nelumbo nucifera HOM05D000109 ORTHO05D000520 5.3e-06 55.5 83 39.8
PGR142G0046 Punica granatum HOM05D000109 ORTHO05D000520 5.3e-06 55.5 68 41.2
Rhsim10G0193800 Rhododendron simsii HOM05D000109 ORTHO05D000520 5.3e-06 55.5 72 44.4
RcHm_v2.0_Chr2g0159561 Rosa chinensis HOM05D000109 ORTHO05D000520 5.3e-06 55.5 73 41.1
Zm00001eb106130 Zea mays HOM05D000109 ORTHO05D000520 5.3e-06 55.5 79 40.5
Cfa019347 Carpinus fangiana HOM05D000109 ORTHO05D000520 6.9e-06 55.1 77 42.9
AUR62035147 Chenopodium quinoa HOM05D000109 ORTHO05D000520 6.9e-06 55.1 83 36.1
AUR62042587 Chenopodium quinoa HOM05D000109 ORTHO05D000520 6.9e-06 55.1 84 35.7
Gohir.A05G178100 Gossypium hirsutum HOM05D000109 ORTHO05D000520 6.9e-06 55.1 73 38.4
Gohir.D12G160200 Gossypium hirsutum HOM05D000109 ORTHO05D000520 6.9e-06 55.1 70 38.6
Lj4A422G23 Lonicera japonica HOM05D000109 ORTHO05D000520 6.9e-06 55.1 82 36.6
PSO541G5543 Papaver somniferum HOM05D000109 ORTHO05D000520 6.9e-06 55.1 76 40.8
PGR119G0270 Punica granatum HOM05D000109 ORTHO05D000520 6.9e-06 55.1 66 47.0
Rhsim10G0193400 Rhododendron simsii HOM05D000109 ORTHO05D000520 6.9e-06 55.1 77 39.0
Sabra02G0005700 Salix brachista HOM05D000109 ORTHO05D000520 6.9e-06 55.1 77 40.3
Sed0014428 Sechium edule HOM05D000109 ORTHO05D000520 6.9e-06 55.1 85 43.5
Cfa004791 Carpinus fangiana HOM05D000109 ORTHO05D000520 9.0e-06 54.7 72 45.8
Cfa007094 Carpinus fangiana HOM05D000109 ORTHO05D000520 9.0e-06 54.7 71 42.3
Ciclev10024825m.g Citrus clementina HOM05D000109 ORTHO05D000520 9.0e-06 54.7 70 47.1
CsaV3_4G037470 Cucumis sativus L. HOM05D000109 ORTHO05D000520 9.0e-06 54.7 71 46.5
MD02G1114100 Malus domestica HOM05D000109 ORTHO05D000520 9.0e-06 54.7 69 44.9
TWI75G0524 Tripterygium wilfordii HOM05D000109 ORTHO05D000520 9.0e-06 54.7 69 40.6


User provided reference genes

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