Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv17497 Davidia involucrata HOM05D004341 ORTHO05D005075 5.4e-219 764.2 444 100.0
Dinv05280 Davidia involucrata HOM05D004341 ORTHO05D005075 6.7e-84 315.5 212 95.8
Hma1.2p1_0701F.1_g205915 Hydrangea macrophylla HOM05D004341 ORTHO05D005075 1.5e-75 287.7 213 80.3
TAR626G1254 Trochodendron aralioides HOM05D004341 ORTHO05D005075 3.9e-68 263.1 217 77.4
Nn1g09858 Nelumbo nucifera HOM05D004341 ORTHO05D005075 5.1e-68 262.7 212 77.8
HanXRQChr12g0384191 Helianthus annuus HOM05D004341 ORTHO05D005075 2.0e-67 260.8 212 74.5
Cc09_g04540 Coffea canephora HOM05D004341 ORTHO05D005075 5.7e-67 259.2 212 71.7
Oeu020261.1 Olea europaea HOM05D004341 ORTHO05D005075 5.7e-67 259.2 212 71.2
Lsat_1_v5_gn_4_45480 Lactuca sativa HOM05D004341 ORTHO05D005075 3.7e-66 256.5 212 71.7
Oeu062532.1 Olea europaea HOM05D004341 ORTHO05D005075 6.3e-66 255.8 211 71.6
Hund04610 Selenicereus undatus HOM05D004341 ORTHO05D005075 1.1e-65 255.0 213 70.4
Manes.16G060700 Manihot esculenta HOM05D004341 ORTHO05D005075 1.2e-64 251.5 213 72.3
CSS0011539 Camellia sinensis var. sinensis HOM05D004341 ORTHO05D005075 5.9e-64 249.2 225 67.1
ClCG00G000170 Citrullus lanatus HOM05D004341 ORTHO05D005075 6.5e-63 245.7 220 76.8
ClCG10G003420 Citrullus lanatus HOM05D004341 ORTHO05D005075 6.5e-63 245.7 220 76.8
EL10Ac3g05823 Beta vulgaris HOM05D004341 ORTHO05D005075 1.1e-62 245.0 214 68.2
MELO3C014011.2 Cucumis melo HOM05D004341 ORTHO05D005075 1.4e-62 244.6 220 68.2
Lj1A1153T31 Lonicera japonica HOM05D004341 ORTHO05D005075 1.9e-62 244.2 212 80.7
ECA234G2847 Erigeron canadensis HOM05D004341 ORTHO05D005075 1.2e-61 241.5 212 71.2
Sed0011196 Sechium edule HOM05D004341 ORTHO05D005075 1.6e-61 241.1 222 72.5
Nitab4.5_0000414g0070 Nicotiana tabacum HOM05D004341 ORTHO05D005075 4.7e-61 239.6 212 67.9
Duzib150G1434 Durio zibethinus HOM05D004341 ORTHO05D005075 7.9e-61 238.8 230 70.0
GSVIVG01038073001 Vitis vinifera HOM05D004341 ORTHO05D005075 7.9e-61 238.8 212 78.8
Lj7A164T18 Lonicera japonica HOM05D004341 ORTHO05D005075 1.0e-60 238.4 212 78.3
Lsat_1_v5_gn_3_129240 Lactuca sativa HOM05D004341 ORTHO05D005075 2.3e-60 237.3 212 68.9
AUR62002184 Chenopodium quinoa HOM05D004341 ORTHO05D005075 3.9e-60 236.5 216 69.4
Thecc.09G217200 Theobroma cacao HOM05D004341 ORTHO05D005075 6.7e-60 235.7 224 69.2
MBI06_g30999_MAGBIO Magnolia biondii HOM05D004341 ORTHO05D005075 1.1e-59 235.0 212 73.6
Nitab4.5_0012569g0030 Nicotiana tabacum HOM05D004341 ORTHO05D005075 1.1e-59 235.0 212 71.2
PGR083G1473 Punica granatum HOM05D004341 ORTHO05D005075 1.1e-59 235.0 213 71.8
Hund11810 Selenicereus undatus HOM05D004341 ORTHO05D005075 1.1e-59 235.0 232 61.2
Gohir.A10G168600 Gossypium hirsutum HOM05D004341 ORTHO05D005075 7.4e-59 232.3 228 58.8
Ah.07g207810 Amaranthus hybridus HOM05D004341 ORTHO05D005075 9.7e-59 231.9 219 68.0
arahy.Tifrunner.gnm1.ann1.22GDSE Arachis hypogaea HOM05D004341 ORTHO05D005075 1.7e-58 231.1 234 72.2
arahy.Tifrunner.gnm1.ann1.VCV969 Arachis hypogaea HOM05D004341 ORTHO05D005075 1.7e-58 231.1 234 72.2
Peaxi162Scf00119g01515 Petunia axillaris HOM05D004341 ORTHO05D005075 2.2e-58 230.7 216 68.1
arahy.Tifrunner.gnm1.ann1.W1Y39Q Arachis hypogaea HOM05D004341 ORTHO05D005075 2.8e-58 230.3 234 66.7
CSS0011039 Camellia sinensis var. sinensis HOM05D004341 ORTHO05D005075 2.8e-58 230.3 229 66.4
CAN.G1144.22 Capsicum annuum HOM05D004341 ORTHO05D005075 2.8e-58 230.3 212 65.6
Nitab4.5_0000422g0150 Nicotiana tabacum HOM05D004341 ORTHO05D005075 3.7e-58 229.9 212 67.0
HanXRQChr13g0422931 Helianthus annuus HOM05D004341 ORTHO05D005075 4.8e-58 229.6 212 67.9
TWI15G0268 Tripterygium wilfordii HOM05D004341 ORTHO05D005075 4.8e-58 229.6 212 67.0
Solyc05g010570.3 Solanum lycopersicum HOM05D004341 ORTHO05D005075 6.3e-58 229.2 212 74.1
Sopen05g006350 Solanum pennellii HOM05D004341 ORTHO05D005075 6.3e-58 229.2 212 74.1
Cpa.g.c30482 Carica papaya HOM05D004341 ORTHO05D005075 1.8e-57 227.6 212 66.0
CDE04G3252 Ceratophyllum demersum HOM05D004341 ORTHO05D005075 1.8e-57 227.6 210 70.0
Gorai.011G195600 Gossypium raimondii HOM05D004341 ORTHO05D005075 1.8e-57 227.6 228 61.4
SalBow5G0282 Salvia bowleyana HOM05D004341 ORTHO05D005075 1.8e-57 227.6 212 64.2
Lalb_Chr06g0163081 Lupinus albus HOM05D004341 ORTHO05D005075 3.1e-57 226.9 219 70.8
MSTRG.22399 Avicennia marina HOM05D004341 ORTHO05D005075 4.1e-57 226.5 212 64.2
Gohir.D13G218100 Gossypium hirsutum HOM05D004341 ORTHO05D005075 4.1e-57 226.5 228 60.5
Gorai.013G248900 Gossypium raimondii HOM05D004341 ORTHO05D005075 4.1e-57 226.5 228 60.5
Gohir.D10G174800 Gossypium hirsutum HOM05D004341 ORTHO05D005075 7.0e-57 225.7 228 61.0
Ca_26283_v3 Cicer arietinum L. HOM05D004341 ORTHO05D005075 1.2e-56 224.9 214 69.6
AUR62015527 Chenopodium quinoa HOM05D004341 ORTHO05D005075 1.5e-56 224.6 215 67.9
ECA240G4781 Erigeron canadensis HOM05D006102 ORTHO05D007550 1.5e-56 224.6 203 69.0
Gohir.A13G214400 Gossypium hirsutum HOM05D004341 ORTHO05D005075 2.0e-56 224.2 228 63.2
CAN.G359.8 Capsicum annuum HOM05D004341 ORTHO05D005075 2.6e-56 223.8 212 61.8
Aqoxy4G00695 Aquilegia oxysepala HOM05D004341 ORTHO05D005075 1.0e-55 221.9 227 66.1
Psat6g047640 Pisum sativum HOM05D004341 ORTHO05D005075 1.3e-55 221.5 220 64.1
RcHm_v2.0_Chr5g0022151 Rosa chinensis HOM05D004341 ORTHO05D005075 2.9e-55 220.3 234 67.9
PGSC0003DMG400019653 Solanum tuberosum HOM05D004341 ORTHO05D005075 2.9e-55 220.3 212 74.1
Potri.001G073500 Populus trichocarpa HOM05D004341 ORTHO05D005075 3.8e-55 219.9 222 62.6
QL11p010678 Quercus lobata HOM05D004341 ORTHO05D005075 8.5e-55 218.8 126 89.7
HPP92_006338 Vanilla planifolia HOM05D004341 ORTHO05D005075 8.5e-55 218.8 208 74.5
vmacro03576 Vaccinium macrocarpon HOM05D004341 ORTHO05D005075 1.1e-54 218.4 254 66.9
MD10G1223700 Malus domestica HOM05D004341 ORTHO05D005075 1.9e-54 217.6 229 70.3
Peaxi162Scf00188g00814 Petunia axillaris HOM05D004341 ORTHO05D005075 2.5e-54 217.2 194 66.5
Aa31LG9G8550 Aethionema arabicum HOM05D004341 ORTHO05D005075 3.2e-54 216.9 212 62.7
SGA_v2.0_scaffold28G11752 Striga asiatica HOM05D004341 ORTHO05D005075 4.2e-54 216.5 212 62.7
FAN21G2305 Fragaria x ananassa HOM05D004341 ORTHO05D005075 5.5e-54 216.1 228 68.0
Prupe.4G121600 Prunus persica HOM05D004341 ORTHO05D005075 5.5e-54 216.1 126 86.5
Lj3g0018794 Lotus japonicus HOM05D004341 ORTHO05D005075 9.4e-54 215.3 221 71.0
Glyma.03G001900 Glycine max HOM05D004341 ORTHO05D005075 1.2e-53 214.9 212 75.5
CiPaw.10G108700 Carya illinoinensis HOM05D004341 ORTHO05D005075 1.6e-53 214.5 126 87.3
FAN16G0631 Fragaria x ananassa HOM05D004341 ORTHO05D005075 2.1e-53 214.2 232 66.8
VMungo0331G0448 Vigna mungo HOM05D004341 ORTHO05D005075 2.7e-53 213.8 216 73.1
Lj4g0017726 Lotus japonicus HOM05D004341 ORTHO05D005075 3.6e-53 213.4 220 69.1
FvH4_3g13420 Fragaria vesca HOM05D004341 ORTHO05D005075 6.1e-53 212.6 234 65.8
Rhsim13G0136700 Rhododendron simsii HOM05D004341 ORTHO05D005075 8.0e-53 212.2 251 65.7
Medtr1g047200 Medicago truncatula HOM05D004341 ORTHO05D005075 1.4e-52 211.5 212 71.2
THA.LOC104806232 Tarenaya hassleriana HOM05D004341 ORTHO05D005075 1.4e-52 211.5 219 62.1
Cfa001170 Carpinus fangiana HOM05D004341 ORTHO05D005075 1.8e-52 211.1 125 86.4
Solyc05g018120.2 Solanum lycopersicum HOM05D004341 ORTHO05D005075 8.8e-52 208.8 125 84.8
Phvul.010G058500 Phaseolus vulgaris HOM05D004341 ORTHO05D005075 1.1e-51 208.4 216 72.7
Zm00001eb156710 Zea mays HOM05D004341 ORTHO05D005075 2.6e-51 207.2 209 71.3
Ciclev10016661m.g Citrus clementina HOM05D004341 ORTHO05D005075 1.7e-50 204.5 220 57.7
ATR0737G165 Amborella trichopoda HOM05D004341 ORTHO05D005075 6.3e-50 202.6 215 62.8
unitig_21.g20916 Utricularia gibba HOM05D004341 ORTHO05D005075 6.3e-50 202.6 212 60.4
CANSAT78G0611 Cannabis sativa HOM05D004341 ORTHO05D005075 1.1e-49 201.8 121 84.3
Os01g0680400 Oryza sativa ssp. japonica HOM05D004341 ORTHO05D005075 1.4e-49 201.4 211 70.1
SHI16737 Sapria himalayana HOM05D004341 ORTHO05D005075 1.2e-48 198.4 202 62.4
PSO017G7392 Papaver somniferum HOM05D004341 ORTHO05D005075 2.0e-48 197.6 126 81.0
Zm00001eb360430 Zea mays HOM05D004341 ORTHO05D005075 3.5e-48 196.8 209 67.5
Haze_05182 Corylus avellana HOM05D004341 ORTHO05D005075 2.2e-47 194.1 256 62.1
Dinv14196 Davidia involucrata HOM05D009083 ORTHO05D005075 2.9e-47 193.7 129 83.7
HPP92_027866 Vanilla planifolia HOM05D004341 ORTHO05D005075 3.8e-47 193.4 193 73.6
PSO210G4911 Papaver somniferum HOM05D004341 ORTHO05D005075 6.5e-47 192.6 124 80.6
CARHR227110 Cardamine hirsuta HOM05D004341 ORTHO05D005075 8.5e-47 192.2 125 77.6
COL.COLO4_10402 Corchorus olitorius HOM05D004341 ORTHO05D005075 1.5e-46 191.4 223 55.6
TPR.G20753 Trifolium pratense HOM05D004341 ORTHO05D005075 1.5e-46 191.4 219 66.2
BcaNung03718 Brassica carinata HOM05D004341 ORTHO05D005075 9.4e-46 188.7 126 74.6
Carub.0007s2089 Capsella rubella HOM05D004341 ORTHO05D005075 9.4e-46 188.7 125 76.0
Thhalv10026240m.g Eutrema salsugineum HOM05D004341 ORTHO05D005075 1.2e-45 188.3 126 74.6
BcaC09g51324 Brassica carinata HOM05D004341 ORTHO05D005075 3.6e-45 186.8 126 73.8
AT4G20280 Arabidopsis thaliana HOM05D004341 ORTHO05D005075 1.0e-44 185.3 219 60.3
AL7G33620 Arabidopsis lyrata HOM05D004341 ORTHO05D005075 2.3e-44 184.1 222 58.1
A01p11990 Brassica napus HOM05D004341 ORTHO05D005075 3.0e-44 183.7 125 73.6
Sp7g18640 Schrenkiella parvula HOM05D004341 ORTHO05D005075 3.0e-44 183.7 126 72.2
BolC1t01390H Brassica oleracea HOM05D004341 ORTHO05D005075 4.0e-44 183.3 125 72.8
BraA01t01141Z Brassica rapa HOM05D004341 ORTHO05D005075 4.0e-44 183.3 125 72.8
Sc19g0001970 Simmondsia chinensis HOM05D004341 ORTHO05D005075 4.0e-44 183.3 105 90.5
DCAR_007769 Daucus carota HOM05D004341 ORTHO05D005075 8.8e-44 182.2 201 54.7
C01p14250 Brassica napus HOM05D004341 ORTHO05D005075 1.2e-43 181.8 125 72.8
QL08p059659 Quercus lobata HOM05D004341 ORTHO05D005075 4.1e-41 173.3 216 54.2
Lsat_1_v5_gn_1_1241 Lactuca sativa HOM05D004341 ORTHO05D005075 2.7e-40 170.6 170 64.1
Actinidia34783 Actinidia chinensis HOM05D004341 ORTHO05D005075 3.5e-40 170.2 194 58.8
AT1G20000 Arabidopsis thaliana HOM05D004341 ORTHO05D005075 7.7e-40 169.1 213 50.7
Nitab4.5_0015757g0010 Nicotiana tabacum HOM05D004341 ORTHO05D005075 8.5e-39 165.6 170 65.9
AL1G32730 Arabidopsis lyrata HOM05D004341 ORTHO05D005075 1.9e-38 164.5 124 70.2
Lsat_1_v5_gn_1_77761 Lactuca sativa HOM05D004341 ORTHO05D005075 3.2e-38 163.7 101 84.2
CiPaw.02G184500 Carya illinoinensis HOM05D004341 ORTHO05D005075 2.1e-37 161.0 211 52.1
arahy.Tifrunner.gnm1.ann1.ZMN623 Arachis hypogaea HOM05D004341 ORTHO05D005075 3.6e-37 160.2 194 67.5
Pp3c14_26520 Physcomitrium patens HOM05D004341 ORTHO05D005075 8.0e-37 159.1 127 68.5
Eucgr.G01564 Eucalyptus grandis HOM05D004341 ORTHO05D005075 1.8e-36 157.9 95 82.1
A08p14740 Brassica napus HOM05D004341 ORTHO05D005075 1.2e-35 155.2 204 49.0
BraA08t33460Z Brassica rapa HOM05D004341 ORTHO05D005075 1.2e-35 155.2 204 49.0
CBR_g22400 Chara braunii HOM05D004341 ORTHO05D005075 1.5e-35 154.8 126 63.5
THA.LOC104812926 Tarenaya hassleriana HOM05D004341 ORTHO05D005075 1.5e-35 154.8 214 51.9
FAN25G3107 Fragaria x ananassa HOM05D004341 ORTHO05D005075 2.6e-35 154.1 204 61.8
Mapoly0006s0068 Marchantia polymorpha HOM05D004341 ORTHO05D005075 1.7e-34 151.4 124 65.3
FAN07G2754 Fragaria x ananassa HOM05D004341 ORTHO05D005075 2.8e-34 150.6 108 74.1
BcaB04g20244 Brassica carinata HOM05D004341 ORTHO05D005075 1.4e-33 148.3 215 46.0
BcaB04g18416 Brassica carinata HOM05D004341 ORTHO05D005075 3.1e-33 147.1 125 62.4
BcaB04g20259 Brassica carinata HOM05D004341 ORTHO05D005075 1.0e-31 142.1 130 60.8
TPR.G30192 Trifolium pratense HOM05D004341 ORTHO05D005075 8.6e-31 139.0 215 47.0
Dinv14194 Davidia involucrata HOM05D004341 ORTHO05D005075 1.9e-30 137.9 108 91.7
BcaC09g49417 Brassica carinata HOM05D004341 ORTHO05D005075 5.6e-30 136.3 132 58.3
BolC1t03652H Brassica oleracea HOM05D004341 ORTHO05D005075 3.6e-29 133.7 222 41.0
Sabra01G0051800 Salix brachista HOM05D004341 ORTHO05D005075 3.6e-29 133.7 96 76.0
Oeu020262.1 Olea europaea HOM05D004341 ORTHO05D005075 8.0e-29 132.5 138 60.9
BcaC01g00664 Brassica carinata HOM05D004341 ORTHO05D005075 1.8e-28 131.3 128 57.0
Medtr0085s0030 Medicago truncatula HOM05D004341 ORTHO05D005075 3.0e-28 130.6 170 58.8
BcaB03g11664 Brassica carinata HOM05D004341 ORTHO05D005075 1.5e-27 128.3 126 57.9
SMO115G0310 Selaginella moellendorffii HOM05D004341 ORTHO05D005075 7.5e-27 125.9 102 61.8
Haze_17072 Corylus avellana HOM05D000046 ORTHO05D005075 3.2e-25 120.6 224 47.3
CsaV3_3G003450 Cucumis sativus L. HOM05D004341 ORTHO05D005075 9.2e-25 119.0 146 58.9
FAN11G3831 Fragaria x ananassa HOM05D004341 ORTHO05D005075 1.9e-22 111.3 82 72.0
Nitab4.5_0015757g0020 Nicotiana tabacum HOM05D004341 ORTHO05D005075 1.9e-22 111.3 137 58.4
BcaB04g20257 Brassica carinata HOM05D004341 ORTHO05D005075 2.6e-19 100.9 79 67.1
Sc19g0001960 Simmondsia chinensis HOM05D004341 ORTHO05D005075 2.4e-17 94.4 108 75.9
Cfa001469 Carpinus fangiana HOM05D001719 ORTHO05D007646 7.8e-16 89.4 168 47.0
Potri.003G157450 Populus trichocarpa HOM05D004341 ORTHO05D005075 1.5e-14 85.1 48 81.2
PRCOL_00001421 Prasinoderma coloniale HOM05D004341 ORTHO05D005075 1.1e-12 79.0 88 47.7
BolC3t20569H Brassica oleracea HOM05D001435 ORTHO05D001304 5.2e-12 76.6 65 58.5
Cre01.g011350 Chlamydomonas reinhardtii HOM05D004341 ORTHO05D005075 3.4e-11 73.9 104 37.5
SEGI_17825 Sequoiadendron giganteum HOM05D004341 ORTHO05D005075 1.9e-09 68.2 147 48.3
TWI63G1746 Tripterygium wilfordii HOM05D004341 ORTHO05D005075 1.9e-09 68.2 108 50.0
TPR.G20312 Trifolium pratense HOM05D004341 ORTHO05D005075 3.2e-09 67.4 41 75.6
MCO01G288 Micromonas commoda HOM05D004341 ORTHO05D005075 2.1e-08 64.7 94 44.7
TPR.G36214 Trifolium pratense HOM05D004341 ORTHO05D005075 2.7e-08 64.3 37 81.1
BcaB03g11666 Brassica carinata HOM05D004341 ORTHO05D005075 4.3e-06 57.0 46 63.0


User provided reference genes

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