Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv17416 Davidia involucrata HOM05D002946 ORTHO05D003299 9.4e-50 199.9 102 100.0
vmacro17615 Vaccinium macrocarpon HOM05D002946 ORTHO05D003299 1.5e-18 96.3 75 72.0
PGR083G0181 Punica granatum HOM05D002946 ORTHO05D003299 2.0e-15 85.9 136 42.6
GSVIVG01007864001 Vitis vinifera HOM05D002946 ORTHO05D003299 1.3e-14 83.2 130 44.6
CSS0042419 Camellia sinensis var. sinensis HOM05D002946 ORTHO05D003299 2.2e-14 82.4 132 42.4
CSS0043477 Camellia sinensis var. sinensis HOM05D002946 ORTHO05D003299 2.2e-14 82.4 132 42.4
Thecc.03G102200 Theobroma cacao HOM05D002946 ORTHO05D003299 2.9e-14 82.0 143 41.3
Gohir.A07G068400 Gossypium hirsutum HOM05D002946 ORTHO05D003299 4.9e-14 81.3 136 41.9
Duzib068G0896 Durio zibethinus HOM05D002946 ORTHO05D003299 8.3e-14 80.5 143 40.6
Gohir.D07G072900 Gossypium hirsutum HOM05D002946 ORTHO05D003299 1.1e-13 80.1 136 41.2
Gorai.001G077100 Gossypium raimondii HOM05D002946 ORTHO05D003299 1.1e-13 80.1 136 41.2
SGA_v2.0_scaffold25G10957 Striga asiatica HOM05D002946 ORTHO05D003299 1.4e-13 79.7 121 47.9
Dinv22780 Davidia involucrata HOM05D002946 ORTHO05D003299 2.4e-13 79.0 157 39.5
SalBow5G4596 Salvia bowleyana HOM05D002946 ORTHO05D003299 2.4e-13 79.0 89 61.8
CARHR123130 Cardamine hirsuta HOM05D002946 ORTHO05D003299 4.1e-13 78.2 105 48.6
Duzib205G1457 Durio zibethinus HOM05D002946 ORTHO05D003299 4.1e-13 78.2 143 39.9
Haze_07730 Corylus avellana HOM05D002946 ORTHO05D003299 7.0e-13 77.4 160 37.5
ECA232G3838 Erigeron canadensis HOM05D002946 ORTHO05D003299 9.2e-13 77.0 128 43.8
BcaC02g11066 Brassica carinata HOM05D002946 ORTHO05D003299 1.2e-12 76.6 110 49.1
Lsat_1_v5_gn_4_111120 Lactuca sativa HOM05D002946 ORTHO05D003299 1.2e-12 76.6 110 46.4
Atru.chr9.569 Acer truncatum HOM05D002946 ORTHO05D003299 1.6e-12 76.3 141 37.6
Sabra15G0083900 Salix brachista HOM05D002946 ORTHO05D003299 1.6e-12 76.3 158 35.4
HanXRQChr09g0270261 Helianthus annuus HOM05D002946 ORTHO05D003299 2.7e-12 75.5 120 44.2
TAR622G0553 Trochodendron aralioides HOM05D002946 ORTHO05D003299 3.5e-12 75.1 160 36.9
VMungo1215G3333 Vigna mungo HOM05D002946 ORTHO05D003299 3.5e-12 75.1 72 61.1
DCAR_023170 Daucus carota HOM05D002946 ORTHO05D003299 4.6e-12 74.7 146 37.7
Potri.015G058301 Populus trichocarpa HOM05D002946 ORTHO05D003299 4.6e-12 74.7 158 35.4
Cfa019339 Carpinus fangiana HOM05D002946 ORTHO05D003299 6.0e-12 74.3 166 36.1
Lj5C102T23 Lonicera japonica HOM05D002946 ORTHO05D003299 6.0e-12 74.3 147 39.5
BcaB02g10282 Brassica carinata HOM05D002946 ORTHO05D003299 7.8e-12 73.9 116 46.6
Cpa.g.sc132.25 Carica papaya HOM05D002946 ORTHO05D003299 7.8e-12 73.9 152 36.8
Migut.I00332 Erythranthe guttata HOM05D002946 ORTHO05D003299 7.8e-12 73.9 118 44.1
Phvul.003G184600 Phaseolus vulgaris HOM05D002946 ORTHO05D003299 7.8e-12 73.9 72 61.1
A05p15530 Brassica napus HOM05D002946 ORTHO05D003299 1.0e-11 73.6 114 44.7
BraA05t20469Z Brassica rapa HOM05D002946 ORTHO05D003299 1.0e-11 73.6 114 44.7
MD14G1212200 Malus domestica HOM05D002946 ORTHO05D003299 1.0e-11 73.6 138 39.1
Aa31LG5G6760 Aethionema arabicum HOM05D002946 ORTHO05D003299 1.3e-11 73.2 118 46.6
AL4G24640 Arabidopsis lyrata HOM05D002946 ORTHO05D003299 1.7e-11 72.8 118 43.2
C04p20920 Brassica napus HOM05D002946 ORTHO05D003299 1.7e-11 72.8 111 45.9
BolC4t23621H Brassica oleracea HOM05D002946 ORTHO05D003299 1.7e-11 72.8 111 45.9
BolC4t23622H Brassica oleracea HOM05D002946 ORTHO05D003299 1.7e-11 72.8 111 45.9
COL.COLO4_06853 Corchorus olitorius HOM05D002946 ORTHO05D003299 1.7e-11 72.8 139 38.1
Sp4g12480 Schrenkiella parvula HOM05D002946 ORTHO05D003299 1.7e-11 72.8 125 43.2
AT2G29900 Arabidopsis thaliana HOM05D002946 ORTHO05D003299 3.0e-11 72.0 116 43.1
Rhsim08G0145800 Rhododendron simsii HOM05D002946 ORTHO05D003299 3.9e-11 71.6 148 37.8
THA.LOC104818347 Tarenaya hassleriana HOM05D002946 ORTHO05D003299 3.9e-11 71.6 129 41.9
Oeu044872.1 Olea europaea HOM05D002946 ORTHO05D003299 5.0e-11 71.2 155 36.1
ClCG04G011780 Citrullus lanatus HOM05D002946 ORTHO05D003299 6.6e-11 70.9 162 34.6
MELO3C002032.2 Cucumis melo HOM05D002946 ORTHO05D003299 6.6e-11 70.9 158 35.4
CsaV3_1G006000 Cucumis sativus L. HOM05D002946 ORTHO05D003299 6.6e-11 70.9 158 35.4
Actinidia04824 Actinidia chinensis HOM05D002946 ORTHO05D003299 8.6e-11 70.5 154 36.4
Cc00_g01600 Coffea canephora HOM05D002946 ORTHO05D003299 8.6e-11 70.5 154 36.4
Hma1.2p1_0060F.1_g033070 Hydrangea macrophylla HOM05D002946 ORTHO05D003299 1.1e-10 70.1 144 38.9
Carub.0004s1099 Capsella rubella HOM05D002946 ORTHO05D003299 1.5e-10 69.7 124 44.4
Thhalv10016742m.g Eutrema salsugineum HOM05D002946 ORTHO05D003299 1.5e-10 69.7 124 42.7
Nitab4.5_0001485g0100 Nicotiana tabacum HOM05D002946 ORTHO05D003299 1.5e-10 69.7 155 37.4
Medtr4g109550 Medicago truncatula HOM05D002946 ORTHO05D003299 1.9e-10 69.3 78 56.4
Cpa.g.sc13.169 Carica papaya HOM05D002946 ORTHO05D003299 2.5e-10 68.9 144 36.1
Prupe.5G205400 Prunus persica HOM05D002946 ORTHO05D003299 2.5e-10 68.9 43 81.4
MSTRG.22960 Avicennia marina HOM05D002946 ORTHO05D003299 3.3e-10 68.6 42 81.0
MD06G1225300 Malus domestica HOM05D002946 ORTHO05D003299 3.3e-10 68.6 45 75.6
Nitab4.5_0009401g0040 Nicotiana tabacum HOM05D002946 ORTHO05D003299 4.3e-10 68.2 155 36.8
Sc04g0004340 Simmondsia chinensis HOM05D002946 ORTHO05D003299 4.3e-10 68.2 43 81.4
Nn3g17453 Nelumbo nucifera HOM05D002946 ORTHO05D003299 5.6e-10 67.8 159 35.2
vmacro17612 Vaccinium macrocarpon HOM05D002946 ORTHO05D003299 5.6e-10 67.8 148 36.5
Aqoxy3G03690 Aquilegia oxysepala HOM05D002946 ORTHO05D003299 7.3e-10 67.4 158 35.4
EL10Ac5g11133 Beta vulgaris HOM05D002946 ORTHO05D003299 9.5e-10 67.0 131 37.4
Ca_21772_v3 Cicer arietinum L. HOM05D002946 ORTHO05D003299 1.2e-09 66.6 46 73.9
Actinidia16128 Actinidia chinensis HOM05D002946 ORTHO05D003299 1.6e-09 66.2 43 79.1
CiPaw.11G053700 Carya illinoinensis HOM05D002946 ORTHO05D003299 1.6e-09 66.2 157 35.7
Sed0024061 Sechium edule HOM05D002946 ORTHO05D003299 1.6e-09 66.2 42 78.6
QL10p019588 Quercus lobata HOM05D002946 ORTHO05D003299 2.1e-09 65.9 165 33.3
CDE02G1024 Ceratophyllum demersum HOM05D002946 ORTHO05D003299 2.8e-09 65.5 134 38.8
Glyma.05G020800 Glycine max HOM05D002946 ORTHO05D003299 2.8e-09 65.5 44 77.3
Lalb_Chr12g0197211 Lupinus albus HOM05D002946 ORTHO05D003299 2.8e-09 65.5 42 78.6
TPR.G1995 Trifolium pratense HOM05D002946 ORTHO05D003299 2.8e-09 65.5 46 76.1
CAN.G1228.23 Capsicum annuum HOM05D002946 ORTHO05D003299 3.6e-09 65.1 155 36.1
CAN.G1228.25 Capsicum annuum HOM05D002946 ORTHO05D003299 3.6e-09 65.1 155 36.1
CAN.G3169.1 Capsicum annuum HOM05D002946 ORTHO05D003299 3.6e-09 65.1 155 36.1
AUR62021557 Chenopodium quinoa HOM05D002946 ORTHO05D003299 3.6e-09 65.1 144 34.7
FvH4_5g13800 Fragaria vesca HOM05D002946 ORTHO05D003299 4.7e-09 64.7 42 76.2
FAN13G3220 Fragaria x ananassa HOM05D002946 ORTHO05D003299 4.7e-09 64.7 42 76.2
FAN18G2717 Fragaria x ananassa HOM05D002946 ORTHO05D003299 4.7e-09 64.7 42 76.2
CANSAT80G1649 Cannabis sativa HOM05D002946 ORTHO05D003299 6.2e-09 64.3 46 71.7
Manes.06G084500 Manihot esculenta HOM05D002946 ORTHO05D003299 6.2e-09 64.3 41 80.5
TWI81G0671 Tripterygium wilfordii HOM05D002946 ORTHO05D003299 6.2e-09 64.3 152 34.2
Lj4g0012087 Lotus japonicus HOM05D002946 ORTHO05D003299 8.0e-09 63.9 36 88.9
Psat4g047040 Pisum sativum HOM05D002946 ORTHO05D003299 8.0e-09 63.9 46 73.9
TWI60G0509 Tripterygium wilfordii HOM05D002946 ORTHO05D003299 8.0e-09 63.9 153 34.0
unitig_26.g9667 Utricularia gibba HOM05D002946 ORTHO05D003299 8.0e-09 63.9 128 38.3
MBI19_g07613_MAGBIO Magnolia biondii HOM05D002946 ORTHO05D003299 1.1e-08 63.5 144 36.1
Ah.11g047740 Amaranthus hybridus HOM05D002946 ORTHO05D003299 1.4e-08 63.2 44 72.7
FAN08G1772 Fragaria x ananassa HOM05D002946 ORTHO05D003299 1.4e-08 63.2 42 76.2
PGSC0003DMG400024636 Solanum tuberosum HOM05D002946 ORTHO05D003299 1.8e-08 62.8 151 35.8
GSVIVG01029908001 Vitis vinifera HOM05D002946 ORTHO05D003299 1.8e-08 62.8 78 52.6
Peaxi162Scf00201g00337 Petunia axillaris HOM05D002946 ORTHO05D003299 2.3e-08 62.4 151 35.1
Glyma.17G078500 Glycine max HOM05D002946 ORTHO05D003299 3.1e-08 62.0 44 72.7
AUR62008534 Chenopodium quinoa HOM05D002946 ORTHO05D003299 6.8e-08 60.8 34 85.3
RcHm_v2.0_Chr7g0183141 Rosa chinensis HOM05D002946 ORTHO05D003299 8.9e-08 60.5 34 85.3
THA.LOC104819399 Tarenaya hassleriana HOM05D002946 ORTHO05D003299 8.9e-08 60.5 32 93.8
PSO017G2397 Papaver somniferum HOM05D002946 ORTHO05D003299 1.2e-07 60.1 39 79.5
AagrBONN_evm.TU.Sc2ySwM_344.570 Anthoceros agrestis HOM05D002946 ORTHO05D003299 1.5e-07 59.7 45 71.1
SEGI_05975 Sequoiadendron giganteum HOM05D002946 ORTHO05D003299 1.5e-07 59.7 53 62.3
PSO478G3024 Papaver somniferum HOM05D002946 ORTHO05D003299 2.6e-07 58.9 31 93.5
Sopen03g034150 Solanum pennellii HOM05D002946 ORTHO05D003299 4.4e-07 58.2 32 90.6
Zm00001eb219250 Zea mays HOM05D002946 ORTHO05D003299 4.4e-07 58.2 47 63.8
Os03g0603800 Oryza sativa ssp. japonica HOM05D002946 ORTHO05D003299 2.9e-06 55.5 31 87.1
ATR0177G039 Amborella trichopoda HOM05D002946 ORTHO05D003299 6.4e-06 54.3 68 50.0


User provided reference genes

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