Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv16543 Davidia involucrata HOM05D005486 ORTHO05D007411 4.0e-193 677.9 349 100.0
CSS0021505 Camellia sinensis var. sinensis HOM05D005486 ORTHO05D007411 7.6e-75 285.0 343 54.5
Hma1.2p1_1391F.1_g280150 Hydrangea macrophylla HOM05D005486 ORTHO05D007411 9.6e-70 268.1 292 56.8
Rhsim09G0115000 Rhododendron simsii HOM05D005486 ORTHO05D007411 1.6e-69 267.3 340 49.7
vmacro10503 Vaccinium macrocarpon HOM05D005486 ORTHO05D007411 7.4e-62 241.9 347 48.4
Actinidia16599 Actinidia chinensis HOM05D005486 ORTHO05D007411 2.7e-56 223.4 290 49.0
TAR629G0806 Trochodendron aralioides HOM05D005486 ORTHO05D007411 2.2e-50 203.8 329 47.7
Eucgr.G02380 Eucalyptus grandis HOM05D005486 ORTHO05D007411 8.2e-45 185.3 342 39.5
Haze_11801 Corylus avellana HOM05D005486 ORTHO05D007411 1.3e-42 177.9 374 39.6
TWI31G0478 Tripterygium wilfordii HOM05D005486 ORTHO05D007411 1.7e-42 177.6 347 41.2
Cfa008789 Carpinus fangiana HOM05D005486 ORTHO05D007411 7.2e-41 172.2 397 37.8
Nn3g17656 Nelumbo nucifera HOM05D005486 ORTHO05D007411 1.0e-39 168.3 358 39.4
Actinidia34665 Actinidia chinensis HOM05D005486 ORTHO05D007411 1.4e-39 167.9 254 43.7
CANSAT64G2054 Cannabis sativa HOM05D005486 ORTHO05D007411 2.3e-39 167.2 358 38.8
Atru.chr11.1428 Acer truncatum HOM05D005486 ORTHO05D007411 1.1e-38 164.9 341 38.4
Nitab4.5_0003073g0050 Nicotiana tabacum HOM05D005486 ORTHO05D007411 1.1e-38 164.9 455 32.3
Nitab4.5_0010558g0010 Nicotiana tabacum HOM05D005486 ORTHO05D007411 8.2e-37 158.7 448 31.2
Potri.008G111100 Populus trichocarpa HOM05D005486 ORTHO05D007411 1.1e-36 158.3 356 37.6
Sopen05g005890 Solanum pennellii HOM05D005486 ORTHO05D007411 9.1e-36 155.2 443 34.1
QL03p044642 Quercus lobata HOM05D005486 ORTHO05D007411 1.2e-35 154.8 393 36.4
PGSC0003DMG400025103 Solanum tuberosum HOM05D005486 ORTHO05D007411 1.2e-35 154.8 407 33.7
Ciclev10030527m.g Citrus clementina HOM05D005486 ORTHO05D007411 1.3e-34 151.4 321 39.3
CiPaw.05G117000 Carya illinoinensis HOM05D005486 ORTHO05D007411 1.7e-34 151.0 427 35.1
PGR119G1261 Punica granatum HOM05D005486 ORTHO05D007411 2.2e-34 150.6 305 40.7
TWI79G0683 Tripterygium wilfordii HOM05D005486 ORTHO05D007411 9.4e-33 145.2 299 40.8
Manes.06G075700 Manihot esculenta HOM05D005486 ORTHO05D007411 1.6e-32 144.4 369 36.9
Lalb_Chr17g0341801 Lupinus albus HOM05D005486 ORTHO05D007411 4.7e-32 142.9 328 38.1
Cpa.g.sc1.245 Carica papaya HOM05D005486 ORTHO05D007411 1.0e-31 141.7 385 34.5
Thecc.02G364500 Theobroma cacao HOM05D005486 ORTHO05D007411 1.8e-31 141.0 381 35.7
Potri.010G132600 Populus trichocarpa HOM05D005486 ORTHO05D007411 5.2e-31 139.4 316 38.6
Prupe.1G301600 Prunus persica HOM05D005486 ORTHO05D007411 8.8e-31 138.7 420 33.3
MSTRG.13492 Avicennia marina HOM05D005486 ORTHO05D007411 5.3e-28 129.4 390 32.3
Sabra10G0101300 Salix brachista HOM05D005486 ORTHO05D007411 9.1e-28 128.6 359 36.8
MD16G1051000 Malus domestica HOM05D005486 ORTHO05D007411 1.6e-27 127.9 439 33.0
Lj2g0014013 Lotus japonicus HOM05D005486 ORTHO05D007411 2.6e-27 127.1 324 35.8
Duzib251G0619 Durio zibethinus HOM05D005486 ORTHO05D007411 3.5e-27 126.7 350 34.3
Gohir.A12G173400 Gossypium hirsutum HOM05D005486 ORTHO05D007411 5.9e-27 125.9 382 34.3
Gorai.008G188400 Gossypium raimondii HOM05D005486 ORTHO05D007411 2.9e-26 123.6 382 34.0
CAN.G184.62 Capsicum annuum HOM05D005486 ORTHO05D007411 3.8e-26 123.2 409 32.5
Glyma.01G092400 Glycine max HOM05D005486 ORTHO05D007411 5.0e-26 122.9 325 35.4
Gohir.D12G176000 Gossypium hirsutum HOM05D005486 ORTHO05D007411 1.1e-25 121.7 382 33.8
TAR622G0197 Trochodendron aralioides HOM05D005486 ORTHO05D007411 5.5e-25 119.4 309 36.9
Cc11_g10920 Coffea canephora HOM05D005486 ORTHO05D007411 5.7e-22 109.4 244 39.8
MELO3C012197.2 Cucumis melo HOM05D005486 ORTHO05D007411 9.7e-22 108.6 404 30.7
FAN22G2135 Fragaria x ananassa HOM05D005486 ORTHO05D007411 9.7e-22 108.6 459 29.0
Glyma.02G129800 Glycine max HOM05D005486 ORTHO05D007411 2.2e-21 107.5 337 32.9
SalBow8G5042 Salvia bowleyana HOM05D005486 ORTHO05D007411 2.8e-21 107.1 441 30.2
Hund05782 Selenicereus undatus HOM05D005486 ORTHO05D007411 2.8e-21 107.1 331 34.1
EL10Ac6g14546 Beta vulgaris HOM05D005486 ORTHO05D007411 6.3e-21 105.9 339 36.3
Ca_07880_v3 Cicer arietinum L. HOM05D005486 ORTHO05D007411 8.2e-21 105.5 303 34.7
Lalb_Chr10g0099591 Lupinus albus HOM05D005486 ORTHO05D007411 1.8e-20 104.4 302 33.1
CsaV3_5G033800 Cucumis sativus L. HOM05D005486 ORTHO05D007411 2.7e-19 100.5 389 29.6
FAN07G1378 Fragaria x ananassa HOM05D005486 ORTHO05D007411 2.7e-19 100.5 457 29.1
COL.COLO4_11242 Corchorus olitorius HOM05D005486 ORTHO05D007411 5.9e-19 99.4 352 29.0
Actinidia30166 Actinidia chinensis HOM05D005486 ORTHO05D007411 1.0e-18 98.6 110 50.9
FvH4_4g28440 Fragaria vesca HOM05D005486 ORTHO05D007411 1.7e-18 97.8 459 28.5
MD13G1050300 Malus domestica HOM05D005486 ORTHO05D007411 2.2e-18 97.4 465 28.6
DCAR_009846 Daucus carota HOM05D005486 ORTHO05D007411 3.8e-18 96.7 396 27.0
VMungo1215G0217 Vigna mungo HOM05D005486 ORTHO05D007411 8.5e-18 95.5 313 31.9
GSVIVG01012004001 Vitis vinifera HOM05D005486 ORTHO05D007411 1.5e-17 94.7 232 34.9
Phvul.003G024300 Phaseolus vulgaris HOM05D005486 ORTHO05D007411 4.2e-17 93.2 313 33.5
Oeu041861.2 Olea europaea HOM05D005486 ORTHO05D007411 5.5e-17 92.8 281 33.1
RcHm_v2.0_Chr4g0436401 Rosa chinensis HOM05D005486 ORTHO05D007411 1.2e-16 91.7 137 46.7
arahy.Tifrunner.gnm1.ann1.HYI70A Arachis hypogaea HOM05D005486 ORTHO05D007411 1.6e-16 91.3 311 32.8
ClCG05G023220 Citrullus lanatus HOM05D005486 ORTHO05D007411 2.1e-16 90.9 404 28.7
ClCG00G003720 Citrullus lanatus HOM05D005486 ORTHO05D007411 2.7e-16 90.5 404 28.7
FAN12G0975 Fragaria x ananassa HOM05D005486 ORTHO05D007411 2.7e-16 90.5 459 27.7
Psat2g089040 Pisum sativum HOM05D005486 ORTHO05D007411 4.7e-16 89.7 319 31.0
AUR62007761 Chenopodium quinoa HOM05D005486 ORTHO05D007411 6.1e-16 89.4 333 30.3
arahy.Tifrunner.gnm1.ann1.S5RRBC Arachis hypogaea HOM05D005486 ORTHO05D007411 8.0e-16 89.0 316 34.2
AUR62002956 Chenopodium quinoa HOM05D005486 ORTHO05D007411 1.8e-15 87.8 357 28.3
TPR.G24201 Trifolium pratense HOM05D005486 ORTHO05D007411 1.8e-15 87.8 308 31.2
Aqoxy3G03843 Aquilegia oxysepala HOM05D005486 ORTHO05D007411 2.3e-15 87.4 337 34.1
SGA_v2.0_scaffold59G20635 Striga asiatica HOM05D005486 ORTHO05D007411 3.0e-15 87.0 384 29.7
Actinidia32431 Actinidia chinensis HOM05D005486 ORTHO05D007411 8.8e-15 85.5 112 46.4
MBI16_g36049_MAGBIO Magnolia biondii HOM05D005486 ORTHO05D007411 1.8e-12 77.8 244 36.9
Ah.02g127300 Amaranthus hybridus HOM05D005486 ORTHO05D007411 5.4e-12 76.3 351 28.8
Sed0017603 Sechium edule HOM05D005486 ORTHO05D007411 1.2e-11 75.1 359 28.7
PSO063G5162 Papaver somniferum HOM05D005486 ORTHO05D007411 1.6e-11 74.7 223 37.7
PSO782G0099 Papaver somniferum HOM05D005486 ORTHO05D007411 4.5e-11 73.2 222 36.9
Peaxi162Scf00198g00414 Petunia axillaris HOM05D005486 ORTHO05D007411 5.9e-11 72.8 354 30.2
Sc14g0007640 Simmondsia chinensis HOM05D005486 ORTHO05D007411 1.3e-10 71.6 437 27.0
FAN17G2383 Fragaria x ananassa HOM05D005486 ORTHO05D007411 3.8e-10 70.1 195 34.4
Lsat_1_v5_gn_4_20360 Lactuca sativa HOM05D005486 ORTHO05D007411 4.7e-08 63.2 111 39.6
THA.LOC104808436 Tarenaya hassleriana HOM05D005486 ORTHO05D007411 4.7e-08 63.2 410 28.3
Medtr4g012000 Medicago truncatula HOM05D005486 ORTHO05D007411 6.8e-07 59.3 312 27.9
ECA233G2219 Erigeron canadensis HOM05D005486 ORTHO05D007411 1.2e-06 58.5 237 30.4
BraA02t06590Z Brassica rapa HOM05D005486 ORTHO05D007411 5.7e-06 56.2 317 30.6
A02p15280 Brassica napus HOM05D005486 ORTHO05D007411 7.5e-06 55.8 324 29.9
Lsat_1_v5_gn_8_38000 Lactuca sativa HOM05D005486 ORTHO05D007411 7.5e-06 55.8 206 34.5


User provided reference genes

Program Settings