Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv15742 Davidia involucrata HOM05D004222 ORTHO05D004982 1.4e-96 356.3 180 100.0
Rhsim08G0239600 Rhododendron simsii HOM05D004222 ORTHO05D004982 7.1e-85 317.4 179 88.3
Rhsim01G0228800 Rhododendron simsii HOM05D004222 ORTHO05D004982 2.3e-83 312.4 179 87.7
vmacro16353 Vaccinium macrocarpon HOM05D004222 ORTHO05D004982 3.9e-83 311.6 179 87.7
Dinv37865 Davidia involucrata HOM05D004222 ORTHO05D004982 5.1e-83 311.2 180 89.4
CSS0031925 Camellia sinensis var. sinensis HOM05D004222 ORTHO05D004982 8.7e-83 310.5 182 87.9
vmacro15039 Vaccinium macrocarpon HOM05D004222 ORTHO05D004982 1.1e-82 310.1 179 86.6
Actinidia21792 Actinidia chinensis HOM05D004222 ORTHO05D004982 3.3e-82 308.5 181 88.4
Lj9A532G68 Lonicera japonica HOM05D004222 ORTHO05D004982 3.3e-82 308.5 180 87.2
Lj9C524T6 Lonicera japonica HOM05D004222 ORTHO05D004982 3.3e-82 308.5 180 87.2
Haze_16054 Corylus avellana HOM05D004222 ORTHO05D004982 1.4e-80 303.1 180 86.7
GSVIVG01016750001 Vitis vinifera HOM05D004222 ORTHO05D004982 1.8e-80 302.8 180 86.1
CiPaw.01G218100 Carya illinoinensis HOM05D004222 ORTHO05D004982 2.4e-80 302.4 180 87.2
Hma1.2p1_0074F.1_g038830 Hydrangea macrophylla HOM05D004222 ORTHO05D004982 9.0e-80 300.4 180 86.1
Hma1.2p1_3000F.1_g331525 Hydrangea macrophylla HOM05D004222 ORTHO05D004982 9.0e-80 300.4 180 86.1
Manes.11G019600 Manihot esculenta HOM05D004222 ORTHO05D004982 9.0e-80 300.4 180 86.1
Sabra01G0142300 Salix brachista HOM05D004222 ORTHO05D004982 9.0e-80 300.4 180 87.8
Potri.001G168300 Populus trichocarpa HOM05D004222 ORTHO05D004982 1.5e-79 299.7 180 87.2
TAR383G0284 Trochodendron aralioides HOM05D004222 ORTHO05D004982 1.1e-77 293.5 178 84.8
Lsat_1_v5_gn_4_74980 Lactuca sativa HOM05D004222 ORTHO05D004982 1.4e-77 293.1 180 82.2
Cfa003517 Carpinus fangiana HOM05D004222 ORTHO05D004982 2.5e-77 292.4 176 84.1
Manes.04G145400 Manihot esculenta HOM05D004222 ORTHO05D004982 2.5e-77 292.4 180 82.2
Actinidia32191 Actinidia chinensis HOM05D004222 ORTHO05D004982 5.5e-77 291.2 181 83.4
FAN09G4904 Fragaria x ananassa HOM05D004222 ORTHO05D004982 1.2e-76 290.0 173 84.4
QL05p004213 Quercus lobata HOM05D004222 ORTHO05D004982 1.6e-76 289.7 179 84.9
FvH4_6g34870 Fragaria vesca HOM05D004222 ORTHO05D004982 3.5e-76 288.5 173 83.8
FAN14G1002 Fragaria x ananassa HOM05D004222 ORTHO05D004982 3.5e-76 288.5 173 83.8
Duzib235G1272 Durio zibethinus HOM05D004222 ORTHO05D004982 4.6e-76 288.1 173 85.0
CiPaw.02G135300 Carya illinoinensis HOM05D004222 ORTHO05D004982 1.8e-75 286.2 180 84.4
FAN02G1508 Fragaria x ananassa HOM05D004222 ORTHO05D004982 2.3e-75 285.8 173 83.2
Nitab4.5_0003780g0070 Nicotiana tabacum HOM05D004222 ORTHO05D004982 3.0e-75 285.4 186 81.7
DCAR_002631 Daucus carota HOM05D004222 ORTHO05D004982 3.9e-75 285.0 179 81.0
Solyc04g010090.3 Solanum lycopersicum HOM05D004222 ORTHO05D004982 3.9e-75 285.0 186 81.7
Sopen04g005230 Solanum pennellii HOM05D004222 ORTHO05D004982 3.9e-75 285.0 186 81.7
Gorai.011G059100 Gossypium raimondii HOM05D004222 ORTHO05D004982 6.7e-75 284.3 173 84.4
Oeu026248.1 Olea europaea HOM05D004222 ORTHO05D004982 8.7e-75 283.9 182 80.8
Nitab4.5_0006737g0050 Nicotiana tabacum HOM05D004222 ORTHO05D004982 1.5e-74 283.1 186 81.2
RcHm_v2.0_Chr2g0145741 Rosa chinensis HOM05D004222 ORTHO05D004982 1.5e-74 283.1 180 80.6
CAN.G786.39 Capsicum annuum HOM05D004222 ORTHO05D004982 2.5e-74 282.3 186 80.6
Gohir.A10G053600 Gossypium hirsutum HOM05D004222 ORTHO05D004982 3.3e-74 282.0 173 83.8
PGSC0003DMG400011493 Solanum tuberosum HOM05D004222 ORTHO05D004982 4.3e-74 281.6 186 81.2
Atru.chr1.3997 Acer truncatum HOM05D004222 ORTHO05D004982 5.7e-74 281.2 180 81.7
Eucgr.G03389 Eucalyptus grandis HOM05D004222 ORTHO05D004982 5.7e-74 281.2 180 80.0
Gohir.D10G055400 Gossypium hirsutum HOM05D004222 ORTHO05D004982 5.7e-74 281.2 173 83.8
Cc02_g29210 Coffea canephora HOM05D004222 ORTHO05D004982 7.4e-74 280.8 177 80.8
ECA232G1089 Erigeron canadensis HOM05D004222 ORTHO05D004982 7.4e-74 280.8 180 80.6
Thecc.06G121100 Theobroma cacao HOM05D004222 ORTHO05D004982 7.4e-74 280.8 180 82.8
DCAR_023344 Daucus carota HOM05D004222 ORTHO05D004982 9.6e-74 280.4 179 78.8
Cc04_g01280 Coffea canephora HOM05D004222 ORTHO05D004982 1.3e-73 280.0 174 80.5
SGA_v2.0_scaffold4G02066 Striga asiatica HOM05D004222 ORTHO05D004982 1.6e-73 279.6 182 80.2
PGR031G1684 Punica granatum HOM05D004222 ORTHO05D004982 2.1e-73 279.3 181 81.2
TAR626G0656 Trochodendron aralioides HOM05D004222 ORTHO05D004982 2.8e-73 278.9 176 82.4
AUR62006751 Chenopodium quinoa HOM05D004222 ORTHO05D004982 6.3e-73 277.7 180 78.3
Eucgr.H02488 Eucalyptus grandis HOM05D004222 ORTHO05D004982 1.1e-72 276.9 180 79.4
EL10Ac4g09456 Beta vulgaris HOM05D004222 ORTHO05D004982 1.4e-72 276.6 180 79.4
MELO3C024352.2 Cucumis melo HOM05D004222 ORTHO05D004982 1.4e-72 276.6 180 80.6
A08p01190 Brassica napus HOM05D004222 ORTHO05D004982 4.1e-72 275.0 179 80.4
BraA08t32170Z Brassica rapa HOM05D004222 ORTHO05D004982 4.1e-72 275.0 179 80.4
BolC3t21520H Brassica oleracea HOM05D004222 ORTHO05D004982 6.9e-72 274.2 179 79.9
Sc16g0009040 Simmondsia chinensis HOM05D004222 ORTHO05D004982 6.9e-72 274.2 181 79.6
BcaC01g01437 Brassica carinata HOM05D004222 ORTHO05D004982 9.0e-72 273.9 179 79.9
C03p92020 Brassica napus HOM05D004222 ORTHO05D004982 9.0e-72 273.9 179 79.9
TWI31G0208 Tripterygium wilfordii HOM05D004222 ORTHO05D004982 9.0e-72 273.9 180 81.7
AUR62000395 Chenopodium quinoa HOM05D004222 ORTHO05D004982 1.2e-71 273.5 180 77.2
PSO135G0791 Papaver somniferum HOM05D004222 ORTHO05D004982 1.2e-71 273.5 179 78.8
Sp1g40590 Schrenkiella parvula HOM05D004222 ORTHO05D004982 1.2e-71 273.5 182 78.0
Ciclev10032895m.g Citrus clementina HOM05D004222 ORTHO05D004982 1.5e-71 273.1 176 79.5
BcaB04g17022 Brassica carinata HOM05D004222 ORTHO05D004982 2.0e-71 272.7 175 80.6
ClCG09G000990 Citrullus lanatus HOM05D004222 ORTHO05D004982 2.6e-71 272.3 175 80.6
CsaV3_7G034430 Cucumis sativus L. HOM05D004222 ORTHO05D004982 3.4e-71 271.9 180 80.0
Ciclev10026608m.g Citrus clementina HOM05D004222 ORTHO05D004982 2.9e-70 268.9 180 77.2
Sed0002362 Sechium edule HOM05D004222 ORTHO05D004982 2.9e-70 268.9 179 79.3
TWI75G1350 Tripterygium wilfordii HOM05D004222 ORTHO05D004982 3.8e-70 268.5 180 78.9
Lalb_Chr13g0298711 Lupinus albus HOM05D004222 ORTHO05D004982 6.5e-70 267.7 176 77.8
Oeu043649.1 Olea europaea HOM05D004222 ORTHO05D004982 6.5e-70 267.7 194 74.2
ECA232G2519 Erigeron canadensis HOM05D004222 ORTHO05D004982 1.1e-69 266.9 180 77.8
arahy.Tifrunner.gnm1.ann1.J7IGQN Arachis hypogaea HOM05D004222 ORTHO05D004982 1.9e-69 266.2 183 76.5
Thhalv10012402m.g Eutrema salsugineum HOM05D004222 ORTHO05D004982 2.5e-69 265.8 182 76.9
Prupe.3G039800 Prunus persica HOM05D004222 ORTHO05D004982 2.5e-69 265.8 180 78.9
COL.COLO4_30749 Corchorus olitorius HOM05D004222 ORTHO05D004982 3.2e-69 265.4 178 78.1
MD09G1181700 Malus domestica HOM05D004222 ORTHO05D004982 3.2e-69 265.4 173 80.9
PSO724G0032 Papaver somniferum HOM05D004222 ORTHO05D004982 3.2e-69 265.4 180 76.7
arahy.Tifrunner.gnm1.ann1.M5IJ04 Arachis hypogaea HOM05D004222 ORTHO05D004982 5.5e-69 264.6 183 76.0
Glyma.17G037200 Glycine max HOM05D004222 ORTHO05D004982 7.2e-69 264.2 172 79.1
Nn2g10347 Nelumbo nucifera HOM05D004222 ORTHO05D004982 9.3e-69 263.8 167 80.2
SGA_v2.0_scaffold68G22854 Striga asiatica HOM05D004222 ORTHO05D004982 1.2e-68 263.5 182 77.5
ATR0598G103 Amborella trichopoda HOM05D004222 ORTHO05D004982 7.9e-68 260.8 173 75.1
Migut.I01080 Erythranthe guttata HOM05D004222 ORTHO05D004982 7.9e-68 260.8 185 75.7
Lj4g0027352 Lotus japonicus HOM05D004222 ORTHO05D004982 1.0e-67 260.4 175 76.6
Glyma.07G236200 Glycine max HOM05D004222 ORTHO05D004982 2.3e-67 259.2 176 76.7
Medtr4g123000 Medicago truncatula HOM05D004222 ORTHO05D004982 1.9e-66 256.1 176 76.7
Medtr3g015130 Medicago truncatula HOM05D004222 ORTHO05D004982 2.5e-66 255.8 176 76.7
MSTRG.9521 Avicennia marina HOM05D004222 ORTHO05D004982 3.3e-66 255.4 184 72.8
Ca_21404_v3 Cicer arietinum L. HOM05D004222 ORTHO05D004982 7.4e-66 254.2 175 74.9
Ca_21419_v3 Cicer arietinum L. HOM05D004222 ORTHO05D004982 7.4e-66 254.2 175 74.9
Phvul.003G118200 Phaseolus vulgaris HOM05D004222 ORTHO05D004982 7.4e-66 254.2 167 77.2
Ah.04g158670 Amaranthus hybridus HOM05D004222 ORTHO05D004982 1.3e-65 253.4 180 75.0
SalBow6G6030 Salvia bowleyana HOM05D004222 ORTHO05D004982 3.7e-65 251.9 177 74.6
unitig_699.g19654 Utricularia gibba HOM05D004222 ORTHO05D004982 4.8e-65 251.5 176 72.2
Glyma.02G277500 Glycine max HOM05D004222 ORTHO05D004982 1.8e-64 249.6 175 73.1
VMungo0647G2371 Vigna mungo HOM05D004222 ORTHO05D004982 3.1e-64 248.8 175 73.1
THA.LOC104810368 Tarenaya hassleriana HOM05D004222 ORTHO05D004982 4.1e-64 248.4 177 72.9
CANSAT64G2454 Cannabis sativa HOM05D004222 ORTHO05D004982 9.1e-64 247.3 139 87.1
Psat0s1953g0320 Pisum sativum HOM05D004222 ORTHO05D004982 1.2e-63 246.9 178 71.9
TPR.G18581 Trifolium pratense HOM05D004222 ORTHO05D004982 1.2e-63 246.9 175 72.6
PGR042G1688 Punica granatum HOM05D004222 ORTHO05D004982 1.5e-63 246.5 152 79.6
AT1G54140 Arabidopsis thaliana HOM05D004222 ORTHO05D004982 2.6e-63 245.7 183 72.1
AL1G62860 Arabidopsis lyrata HOM05D004222 ORTHO05D004982 4.5e-63 245.0 182 72.0
Peaxi162Scf00528g00226 Petunia axillaris HOM05D004222 ORTHO05D004982 4.5e-63 245.0 135 91.1
Phvul.008G203400 Phaseolus vulgaris HOM05D004222 ORTHO05D004982 5.9e-63 244.6 175 72.0
CARHR044490 Cardamine hirsuta HOM05D004222 ORTHO05D004982 1.0e-62 243.8 180 72.8
CDE08G1040 Ceratophyllum demersum HOM05D004222 ORTHO05D004982 2.9e-62 242.3 175 72.0
BcaC08g44165 Brassica carinata HOM05D004222 ORTHO05D004982 3.8e-62 241.9 181 72.9
Dinv10670 Davidia involucrata HOM05D004222 ORTHO05D004982 3.8e-62 241.9 157 82.8
SalBow6G3336 Salvia bowleyana HOM05D004222 ORTHO05D004982 1.1e-61 240.4 181 70.7
Ah.06g195960 Amaranthus hybridus HOM05D004222 ORTHO05D004982 1.9e-61 239.6 180 69.4
AL1G63010 Arabidopsis lyrata HOM05D004222 ORTHO05D004982 3.2e-61 238.8 183 70.5
SalBow6G2027 Salvia bowleyana HOM05D004222 ORTHO05D004982 3.2e-61 238.8 181 70.2
C06p15670 Brassica napus HOM05D004222 ORTHO05D004982 5.5e-61 238.0 153 79.7
Carub.0001s4338 Capsella rubella HOM05D004222 ORTHO05D004982 7.2e-61 237.7 178 71.3
SEGI_03819 Sequoiadendron giganteum HOM05D004222 ORTHO05D004982 7.2e-61 237.7 178 70.8
BcaB02g10859 Brassica carinata HOM05D004222 ORTHO05D004982 2.1e-60 236.1 180 71.1
BolC6t36754H Brassica oleracea HOM05D004222 ORTHO05D004982 2.1e-60 236.1 181 71.8
HanXRQChr09g0262591 Helianthus annuus HOM05D004222 ORTHO05D004982 2.7e-60 235.7 159 78.0
MBI05_g15473_MAGBIO Magnolia biondii HOM05D004222 ORTHO05D004982 6.7e-59 231.1 181 69.6
Aqoxy5G01362 Aquilegia oxysepala HOM05D004222 ORTHO05D004982 4.4e-58 228.4 172 70.3
Aa31LG10G1270 Aethionema arabicum HOM05D004222 ORTHO05D004982 1.3e-57 226.9 137 81.8
HPP92_016607 Vanilla planifolia HOM05D004222 ORTHO05D004982 1.7e-57 226.5 194 66.5
VMungo1215G2100 Vigna mungo HOM05D004222 ORTHO05D004982 6.3e-57 224.6 242 53.7
SHI11210 Sapria himalayana HOM05D004222 ORTHO05D004982 2.2e-54 216.1 167 68.9
Atru.chr1.2991 Acer truncatum HOM05D004222 ORTHO05D004982 2.1e-52 209.5 121 82.6
Os03g0408500 Oryza sativa ssp. japonica HOM05D004222 ORTHO05D004982 9.7e-50 200.7 180 63.9
Zm00001eb019630 Zea mays HOM05D004222 ORTHO05D004982 1.4e-48 196.8 193 62.2
Mapoly0152s0015 Marchantia polymorpha HOM05D004222 ORTHO05D004982 2.4e-48 196.1 179 58.1
SMO340G0157 Selaginella moellendorffii HOM05D004222 ORTHO05D004982 3.5e-47 192.2 143 63.6
Zm00001eb392970 Zea mays HOM05D004222 ORTHO05D004982 3.5e-47 192.2 150 70.0
Pp3c19_19770 Physcomitrium patens HOM05D004222 ORTHO05D004982 1.3e-46 190.3 176 58.0
CBR_g52315 Chara braunii HOM05D004222 ORTHO05D004982 9.4e-45 184.1 171 55.0
AagrBONN_evm.TU.Sc2ySwM_117.372 Anthoceros agrestis HOM05D004222 ORTHO05D004982 1.6e-44 183.3 185 54.1
AUR62029931 Chenopodium quinoa HOM05D004222 ORTHO05D004982 1.2e-39 167.2 97 82.5
Cc02_g29240 Coffea canephora HOM05D004222 ORTHO05D004982 8.5e-38 161.0 118 72.9
HanXRQChr14g0440851 Helianthus annuus HOM05D004222 ORTHO05D004982 1.5e-37 160.2 183 50.8
AUR62033567 Chenopodium quinoa HOM05D004222 ORTHO05D004982 4.2e-37 158.7 86 88.4
AUR62043147 Chenopodium quinoa HOM05D004222 ORTHO05D004982 8.0e-36 154.5 86 84.9
Eucgr.J01267 Eucalyptus grandis HOM05D004222 ORTHO05D004982 1.8e-35 153.3 175 53.1
Ah.06g188160 Amaranthus hybridus HOM05D000059 ORTHO05D004982 6.8e-35 151.4 132 62.1
TPR.G12685 Trifolium pratense HOM05D004222 ORTHO05D004982 1.1e-32 144.1 89 79.8
Duzib160G0511 Durio zibethinus HOM05D004222 ORTHO05D004982 4.1e-32 142.1 112 67.0
Thhalv10029376m.g Eutrema salsugineum HOM05D004222 ORTHO05D004982 2.7e-31 139.4 132 62.1
C06p09920 Brassica napus HOM05D004222 ORTHO05D004982 2.3e-30 136.3 148 55.4
PRCOL_00004328 Prasinoderma coloniale HOM05D004222 ORTHO05D004982 4.9e-25 118.6 127 50.4
TPR.G10895 Trifolium pratense HOM05D004222 ORTHO05D004982 9.2e-24 114.4 87 70.1
Cre07.g353350 Chlamydomonas reinhardtii HOM05D004222 ORTHO05D004982 1.2e-23 114.0 118 47.5
FAN05G5041 Fragaria x ananassa HOM05D004222 ORTHO05D004982 2.0e-23 113.2 86 67.4
BcaC08g43594 Brassica carinata HOM05D004222 ORTHO05D004982 4.5e-23 112.1 110 60.0
BolC6t36064H Brassica oleracea HOM05D004222 ORTHO05D004982 4.5e-23 112.1 110 60.0
Haze_26828 Corylus avellana HOM05D000371 ORTHO05D004982 9.5e-21 104.4 105 46.7
Os07g0612500 Oryza sativa ssp. japonica HOM05D004222 ORTHO05D004982 1.7e-17 93.6 159 36.5
AUR62034601 Chenopodium quinoa HOM05D004222 ORTHO05D004982 5.4e-16 88.6 46 89.1
unitig_52.g17107 Utricularia gibba HOM05D004222 ORTHO05D004982 1.2e-12 77.4 80 52.5
Medtr6g027990 Medicago truncatula HOM05D004222 ORTHO05D004982 1.6e-12 77.0 65 61.5
CARHR038570 Cardamine hirsuta HOM05D004222 ORTHO05D004982 6.2e-12 75.1 79 54.4
MCO04G196 Micromonas commoda HOM05D004222 ORTHO05D004982 8.0e-12 74.7 89 41.6
ECA238G1237 Erigeron canadensis HOM05D004222 ORTHO05D004982 5.2e-11 72.0 195 34.9
Nitab4.5_0018373g0020 Nicotiana tabacum HOM05D000428 ORTHO05D000582 1.5e-10 70.5 85 48.2


User provided reference genes

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