Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv15687 Davidia involucrata HOM05D003469 ORTHO05D004084 0.0e+00 1638.2 861 100.0
Dinv28114 Davidia involucrata HOM05D003469 ORTHO05D004084 0.0e+00 1254.6 905 76.8
TAR628G0771 Trochodendron aralioides HOM05D003469 ORTHO05D004084 1.5e-281 973.0 879 60.8
CSS0010807 Camellia sinensis var. sinensis HOM05D003469 ORTHO05D004084 3.3e-273 945.3 914 58.6
CiPaw.03G010300 Carya illinoinensis HOM05D003469 ORTHO05D004084 8.0e-251 870.9 879 54.7
GSVIVG01036699001 Vitis vinifera HOM05D003469 ORTHO05D004084 3.7e-248 862.1 916 54.5
Actinidia21939 Actinidia chinensis HOM05D003469 ORTHO05D004084 7.0e-239 831.2 882 53.4
Thecc.08G168800 Theobroma cacao HOM05D003469 ORTHO05D004084 1.2e-238 830.5 904 52.7
Solyc06g063420.4 Solanum lycopersicum HOM05D003469 ORTHO05D004084 6.1e-235 818.1 884 51.7
Sopen06g022880 Solanum pennellii HOM05D003469 ORTHO05D004084 3.1e-234 815.8 881 51.8
Nn5g27173 Nelumbo nucifera HOM05D003469 ORTHO05D004084 3.2e-231 805.8 878 52.1
Phvul.011G031000 Phaseolus vulgaris HOM05D003469 ORTHO05D004084 5.4e-231 805.1 878 51.7
ClCG07G013810 Citrullus lanatus HOM05D003469 ORTHO05D004084 1.2e-230 803.9 881 51.9
Glyma.11G102000 Glycine max HOM05D003469 ORTHO05D004084 6.6e-229 798.1 879 51.8
arahy.Tifrunner.gnm1.ann1.M9HC5A Arachis hypogaea HOM05D003469 ORTHO05D004084 1.5e-228 797.0 888 50.8
Glyma.12G027700 Glycine max HOM05D003469 ORTHO05D004084 7.3e-228 794.7 879 51.9
CsaV3_3G043790 Cucumis sativus L. HOM05D003469 ORTHO05D004084 1.2e-227 793.9 881 51.2
MELO3C013095.2 Cucumis melo HOM05D003469 ORTHO05D004084 2.8e-227 792.7 881 51.1
Lalb_Chr07g0195581 Lupinus albus HOM05D003469 ORTHO05D004084 2.8e-227 792.7 891 51.9
Aqoxy6G00028 Aquilegia oxysepala HOM05D003469 ORTHO05D004084 6.2e-227 791.6 881 50.7
VMungo1127G1455 Vigna mungo HOM05D003469 ORTHO05D004084 1.4e-226 790.4 908 50.4
PSO170G4646 Papaver somniferum HOM05D003469 ORTHO05D004084 4.4e-225 785.4 918 49.3
MSTRG.1003 Avicennia marina HOM05D003469 ORTHO05D004084 2.9e-224 782.7 872 50.1
MBI03_g18641_MAGBIO Magnolia biondii HOM05D003469 ORTHO05D004084 4.9e-224 781.9 879 50.4
Rhsim12G0000800 Rhododendron simsii HOM05D003469 ORTHO05D004084 1.9e-223 780.0 733 57.2
arahy.Tifrunner.gnm1.ann1.046I3L Arachis hypogaea HOM05D003469 ORTHO05D004084 3.0e-221 772.7 881 49.9
Cc00_g11470 Coffea canephora HOM05D003469 ORTHO05D004084 1.2e-219 767.3 874 50.2
Eucgr.G01221 Eucalyptus grandis HOM05D003469 ORTHO05D004084 1.8e-218 763.5 872 50.2
Sc09g0010840 Simmondsia chinensis HOM05D003469 ORTHO05D004084 1.8e-218 763.5 914 50.2
Lj9C173G0 Lonicera japonica HOM05D003469 ORTHO05D004084 2.2e-216 756.5 868 50.7
Lj1g0005967 Lotus japonicus HOM05D003469 ORTHO05D004084 7.1e-215 751.5 903 49.6
Migut.C00329 Erythranthe guttata HOM05D003469 ORTHO05D004084 1.3e-213 747.3 888 48.2
Sed0013857 Sechium edule HOM05D003469 ORTHO05D004084 1.3e-213 747.3 877 48.9
FvH4_6g37900 Fragaria vesca HOM05D003469 ORTHO05D004084 5.1e-213 745.3 876 49.0
FAN14G5376 Fragaria x ananassa HOM05D003469 ORTHO05D004084 3.3e-212 742.7 876 48.9
Nitab4.5_0005224g0040 Nicotiana tabacum HOM05D003469 ORTHO05D004084 4.3e-212 742.3 892 48.4
Gohir.D12G231100 Gossypium hirsutum HOM05D003469 ORTHO05D004084 1.2e-211 740.7 837 50.9
Gorai.008G247300 Gossypium raimondii HOM05D003469 ORTHO05D004084 1.1e-210 737.6 854 50.1
Nitab4.5_0003757g0100 Nicotiana tabacum HOM05D003469 ORTHO05D004084 2.4e-210 736.5 892 49.0
Nitab4.5_0002906g0070 Nicotiana tabacum HOM05D003469 ORTHO05D004084 3.1e-210 736.1 888 48.5
CANSAT78G0348 Cannabis sativa HOM05D003469 ORTHO05D004084 7.6e-209 731.5 911 48.4
RcHm_v2.0_Chr2g0151101 Rosa chinensis HOM05D003469 ORTHO05D004084 9.9e-209 731.1 916 47.7
ECA232G2309 Erigeron canadensis HOM05D003469 ORTHO05D004084 6.4e-208 728.4 880 47.0
FAN02G0848 Fragaria x ananassa HOM05D003469 ORTHO05D004084 2.4e-207 726.5 924 47.0
Gohir.A12G230000 Gossypium hirsutum HOM05D003469 ORTHO05D004084 7.1e-207 724.9 850 50.0
Lj9C162G1 Lonicera japonica HOM05D003469 ORTHO05D004084 2.1e-206 723.4 907 49.0
FAN09G4617 Fragaria x ananassa HOM05D003469 ORTHO05D004084 2.7e-206 723.0 876 47.9
QL09p054764 Quercus lobata HOM05D003469 ORTHO05D004084 6.0e-206 721.8 768 53.9
RcHm_v2.0_Chr2g0151071 Rosa chinensis HOM05D003469 ORTHO05D004084 3.0e-205 719.5 899 47.9
Duzib235G0325 Durio zibethinus HOM05D003469 ORTHO05D004084 2.1e-203 713.4 847 49.8
EL10Ac5g10861 Beta vulgaris HOM05D003469 ORTHO05D004084 4.4e-201 705.7 908 47.0
SalBow7G2370 Salvia bowleyana HOM05D003469 ORTHO05D004084 7.6e-201 704.9 934 45.8
TPR.G38733 Trifolium pratense HOM05D003469 ORTHO05D004084 8.4e-200 701.4 897 46.8
HanXRQChr09g0266911 Helianthus annuus HOM05D003469 ORTHO05D004084 5.4e-199 698.7 883 47.5
Atru.chr9.1130 Acer truncatum HOM05D003469 ORTHO05D004084 9.3e-199 698.0 906 45.8
TWI38G1177 Tripterygium wilfordii HOM05D003469 ORTHO05D004084 7.8e-198 694.9 872 47.7
AUR62008300 Chenopodium quinoa HOM05D003469 ORTHO05D004084 3.9e-197 692.6 885 47.3
CAN.G14.42 Capsicum annuum HOM05D003469 ORTHO05D004084 2.8e-195 686.4 887 46.2
Prupe.8G070000 Prunus persica HOM05D003469 ORTHO05D004084 2.8e-195 686.4 875 47.5
Medtr4g079390 Medicago truncatula HOM05D003469 ORTHO05D004084 3.6e-195 686.0 893 45.8
unitig_26.g9845 Utricularia gibba HOM05D003469 ORTHO05D004084 1.4e-194 684.1 920 44.1
Peaxi162Scf00818g00323 Petunia axillaris HOM05D003469 ORTHO05D004084 1.2e-193 681.0 829 47.5
Nitab4.5_0002354g0130 Nicotiana tabacum HOM05D003469 ORTHO05D004084 2.0e-193 680.2 854 47.3
Hund09398 Selenicereus undatus HOM05D003469 ORTHO05D004084 6.4e-192 675.2 879 46.3
SGA_v2.0_scaffold8G04312 Striga asiatica HOM05D003469 ORTHO05D004084 2.4e-191 673.3 945 43.8
Medtr4g074860 Medicago truncatula HOM05D003469 ORTHO05D004084 1.6e-190 670.6 900 44.2
MD09G1155000 Malus domestica HOM05D003469 ORTHO05D004084 1.3e-189 667.5 922 44.3
HPP92_015320 Vanilla planifolia HOM05D003469 ORTHO05D004084 2.3e-189 666.8 865 45.2
Peaxi162Scf00015g00107 Petunia axillaris HOM05D003469 ORTHO05D004084 3.0e-189 666.4 885 44.9
Manes.06G016500 Manihot esculenta HOM05D003469 ORTHO05D004084 3.3e-188 662.9 832 48.6
DCAR_001477 Daucus carota HOM05D003469 ORTHO05D004084 1.7e-184 650.6 889 45.3
AUR62031062 Chenopodium quinoa HOM05D003469 ORTHO05D004084 2.2e-184 650.2 874 45.3
Potri.013G128900 Populus trichocarpa HOM05D003469 ORTHO05D004084 2.8e-179 633.3 867 45.8
Aqoxy4G02849 Aquilegia oxysepala HOM05D003469 ORTHO05D004084 7.1e-175 618.6 850 44.0
Lsat_1_v5_gn_4_131841 Lactuca sativa HOM05D003469 ORTHO05D004084 3.5e-174 616.3 885 42.5
SMO164G0159 Selaginella moellendorffii HOM05D003469 ORTHO05D004084 3.4e-169 599.7 886 40.9
RcHm_v2.0_Chr6g0293861 Rosa chinensis HOM05D003469 ORTHO05D004084 2.9e-168 596.7 881 43.5
Os11g0266800 Oryza sativa ssp. japonica HOM05D003469 ORTHO05D004084 6.1e-166 589.0 859 41.4
FAN27G0386 Fragaria x ananassa HOM05D003469 ORTHO05D004084 2.3e-165 587.0 843 43.8
vmacro00914 Vaccinium macrocarpon HOM05D003469 ORTHO05D004084 3.3e-164 583.2 1323 33.0
TPR.G32330 Trifolium pratense HOM05D003469 ORTHO05D004084 3.7e-163 579.7 866 42.6
FAN24G3399 Fragaria x ananassa HOM05D003469 ORTHO05D004084 4.8e-163 579.3 878 42.5
FAN15G0576 Fragaria x ananassa HOM05D003469 ORTHO05D004084 8.2e-163 578.6 878 42.4
AUR62039415 Chenopodium quinoa HOM05D003469 ORTHO05D004084 7.7e-161 572.0 675 49.6
Lj9A422T76 Lonicera japonica HOM05D003469 ORTHO05D004084 2.1e-158 563.9 711 47.5
THA.LOC104807542 Tarenaya hassleriana HOM05D003469 ORTHO05D004084 1.0e-157 561.6 906 41.1
Zm00001eb171180 Zea mays HOM05D003469 ORTHO05D004084 4.8e-155 552.7 803 41.8
Ciclev10026956m.g Citrus clementina HOM05D003469 ORTHO05D004084 8.8e-149 531.9 853 41.3
A06p13570 Brassica napus HOM05D003469 ORTHO05D004084 1.1e-146 525.0 874 40.0
BraA06t24509Z Brassica rapa HOM05D003469 ORTHO05D004084 1.1e-146 525.0 874 40.0
AT1G17680 Arabidopsis thaliana HOM05D003469 ORTHO05D004084 3.5e-145 520.0 849 40.0
Carub.0001s1741 Capsella rubella HOM05D003469 ORTHO05D004084 3.5e-145 520.0 849 40.6
AL1G30030 Arabidopsis lyrata HOM05D003469 ORTHO05D004084 1.3e-144 518.1 860 39.7
Ciclev10019721m.g Citrus clementina HOM05D003469 ORTHO05D004084 1.3e-144 518.1 521 54.3
C05p16090 Brassica napus HOM05D003469 ORTHO05D004084 2.5e-143 513.8 856 39.6
BcaC05g25689 Brassica carinata HOM05D003469 ORTHO05D004084 3.2e-143 513.5 856 39.6
BolC5t30309H Brassica oleracea HOM05D003469 ORTHO05D004084 3.2e-143 513.5 856 39.5
Thhalv10006758m.g Eutrema salsugineum HOM05D003469 ORTHO05D004084 2.3e-141 507.3 864 39.2
BolC4t22588H Brassica oleracea HOM05D003469 ORTHO05D004084 3.0e-141 506.9 863 39.4
THA.LOC104800339 Tarenaya hassleriana HOM05D003469 ORTHO05D004084 3.0e-141 506.9 838 41.2
BcaB07g34024 Brassica carinata HOM05D003469 ORTHO05D004084 2.6e-140 503.8 855 38.7
BcaC02g11929 Brassica carinata HOM05D003469 ORTHO05D004084 2.2e-139 500.7 852 39.1
FvH4_2g25610 Fragaria vesca HOM05D003469 ORTHO05D004084 7.0e-138 495.7 878 38.5
Mapoly0024s0108 Marchantia polymorpha HOM05D003469 ORTHO05D004084 5.9e-137 492.7 835 36.3
Aa31LG7G2510 Aethionema arabicum HOM05D003469 ORTHO05D004084 1.9e-135 487.6 850 38.1
ATR1089G047 Amborella trichopoda HOM05D003469 ORTHO05D004084 1.8e-133 481.1 851 37.8
C04p09790 Brassica napus HOM05D003469 ORTHO05D004084 4.9e-131 473.0 867 37.6
TAR633G1719 Trochodendron aralioides HOM05D003469 ORTHO05D004084 6.3e-131 472.6 438 58.9
Pp3c8_10360 Physcomitrium patens HOM05D003469 ORTHO05D004084 2.3e-128 464.2 904 35.4
Ah.15g095790 Amaranthus hybridus HOM05D003469 ORTHO05D004084 5.0e-128 463.0 1377 29.9
AagrBONN_evm.TU.Sc2ySwM_362.2764 Anthoceros agrestis HOM05D003469 ORTHO05D004084 1.0e-125 455.3 897 35.2
CDE05G0531 Ceratophyllum demersum HOM05D003469 ORTHO05D004084 6.8e-125 452.6 465 53.1
Haze_14033 Corylus avellana HOM05D003469 ORTHO05D004084 1.8e-122 444.5 577 47.7
TAR633G1289 Trochodendron aralioides HOM05D003469 ORTHO05D004084 2.3e-120 437.6 411 58.2
Pp3c8_10366 Physcomitrium patens HOM05D003469 ORTHO05D004084 6.0e-113 412.9 900 33.4
Cpa.g.sc21.245 Carica papaya HOM05D003469 ORTHO05D004084 1.2e-97 362.1 345 56.8
FvH4_6g38050 Fragaria vesca HOM05D003469 ORTHO05D004084 2.3e-96 357.8 703 36.4
Ca_19034_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 9.6e-95 352.4 335 56.7
PGSC0003DMG400033134 Solanum tuberosum HOM05D003469 ORTHO05D004084 7.3e-87 326.2 323 54.5
C04p00480 Brassica napus HOM05D003469 ORTHO05D004084 1.5e-84 318.5 655 34.2
EL10Ac5g10434 Beta vulgaris HOM05D003469 ORTHO05D004084 5.8e-84 316.6 540 38.7
Sp1g15780 Schrenkiella parvula HOM05D003469 ORTHO05D004084 1.9e-82 311.6 432 43.5
FvH4_6g38030 Fragaria vesca HOM05D003469 ORTHO05D004084 8.7e-80 302.8 387 45.0
MD17G1141100 Malus domestica HOM05D003469 ORTHO05D004084 1.2e-76 292.4 311 53.1
MD17G1141000 Malus domestica HOM05D003469 ORTHO05D004084 6.4e-75 286.6 324 48.8
COL.COLO4_25121 Corchorus olitorius HOM05D003469 ORTHO05D004084 3.2e-74 284.3 394 43.7
Oeu019664.1 Olea europaea HOM05D003469 ORTHO05D004084 3.9e-72 277.3 361 44.9
AUR62000094 Chenopodium quinoa HOM05D003469 ORTHO05D004084 1.5e-71 275.4 545 37.8
FAN20G2279 Fragaria x ananassa HOM05D003469 ORTHO05D004084 8.1e-70 269.6 476 36.3
Potri.013G129500 Populus trichocarpa HOM05D003469 ORTHO05D000003 2.7e-65 254.6 371 43.7
SHI03012 Sapria himalayana HOM05D003469 ORTHO05D004084 2.7e-65 254.6 269 51.7
CARHR018280 Cardamine hirsuta HOM05D003469 ORTHO05D004084 3.1e-61 241.1 470 35.3
HanXRQChr13g0406831 Helianthus annuus HOM05D003469 ORTHO05D004084 1.3e-59 235.7 159 67.9
Sp4g05240 Schrenkiella parvula HOM05D000751 ORTHO05D005618 9.3e-58 229.6 510 33.7
CDE05G3544 Ceratophyllum demersum HOM05D003469 ORTHO05D004084 2.7e-57 228.0 416 39.9
SEGI_08666 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 4.2e-50 204.1 163 62.0
CBR_g36749 Chara braunii HOM05D003469 ORTHO05D004084 9.4e-50 203.0 1013 21.4
COL.COLO4_25120 Corchorus olitorius HOM05D003469 ORTHO05D004084 5.1e-48 197.2 432 36.1
Ca_16139_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 3.7e-46 191.0 348 39.1
vmacro23125 Vaccinium macrocarpon HOM05D003469 ORTHO05D004084 2.4e-45 188.3 419 32.5
Thhalv10002713m.g Eutrema salsugineum HOM05D003469 ORTHO05D004084 5.9e-44 183.7 137 64.2
Actinidia02459 Actinidia chinensis HOM05D003469 ORTHO05D004084 1.7e-43 182.2 120 71.7
C04p00500 Brassica napus HOM05D003469 ORTHO05D004084 1.8e-40 172.2 254 40.9
Ca_16140_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 5.9e-36 157.1 147 55.8
SHI03015 Sapria himalayana HOM05D003469 ORTHO05D004084 4.2e-34 151.0 250 39.2
Haze_14034 Corylus avellana HOM05D003469 ORTHO05D004084 5.2e-32 144.1 132 56.1
BcaC02g12574 Brassica carinata HOM05D003469 ORTHO05D004084 1.1e-31 142.9 100 66.0
BcaC02g12573 Brassica carinata HOM05D003469 ORTHO05D004084 3.3e-31 141.4 242 36.8
Psat0s3379g0040 Pisum sativum HOM05D003469 ORTHO05D004084 1.8e-29 135.6 116 58.6
Oeu035042.1 Olea europaea HOM05D003469 ORTHO05D004084 9.1e-29 133.3 278 34.9
Medtr4g074690 Medicago truncatula HOM05D003469 ORTHO05D004084 3.5e-28 131.3 325 30.8
QL09p054785 Quercus lobata HOM05D003469 ORTHO05D004084 5.9e-28 130.6 168 48.2
Glyma.07G124800 Glycine max HOM05D003469 ORTHO05D004084 7.7e-28 130.2 144 50.0
ECA232G2749 Erigeron canadensis HOM05D001807 ORTHO05D002044 1.0e-27 129.8 90 64.4
Cpa.g.sc21.244 Carica papaya HOM05D003469 ORTHO05D004084 1.7e-27 129.0 86 72.1
Ciclev10020572m.g Citrus clementina HOM05D003469 ORTHO05D004084 1.2e-25 122.9 334 30.8
Aa31LG2G17580 Aethionema arabicum HOM05D003469 ORTHO05D004084 1.6e-25 122.5 81 71.6
Haze_14035 Corylus avellana HOM05D003469 ORTHO05D004084 2.7e-25 121.7 102 66.7
Rhsim02G0229800 Rhododendron simsii HOM05D000151 ORTHO05D000074 1.0e-24 119.8 80 71.2
SEGI_05114 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 8.3e-22 110.2 133 48.1
ATR0002G001 Amborella trichopoda HOM05D003469 ORTHO05D004084 1.4e-21 109.4 72 72.2
Cpa.g.sc21.247 Carica papaya HOM05D003469 ORTHO05D004084 1.4e-21 109.4 109 56.9
Lsat_1_v5_gn_0_35341 Lactuca sativa HOM05D003469 ORTHO05D004084 2.7e-20 105.1 161 37.3
Cre10.g464950 Chlamydomonas reinhardtii HOM05D003469 ORTHO05D004084 7.7e-20 103.6 253 28.5
Oeu026515.1 Olea europaea HOM05D003469 ORTHO05D004084 8.5e-19 100.1 87 56.3
SEGI_39938 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 2.4e-13 82.0 101 43.6
Lj9A422T78 Lonicera japonica HOM05D003469 ORTHO05D029064 7.0e-13 80.5 88 54.5
SHI03013 Sapria himalayana HOM05D003469 ORTHO05D004084 3.5e-12 78.2 105 40.0
Sp4g05220 Schrenkiella parvula HOM05D003469 ORTHO05D004084 5.6e-10 70.9 49 65.3
MD17G1140900 Malus domestica HOM05D003469 ORTHO05D004084 9.5e-10 70.1 83 49.4
Actinidia02458 Actinidia chinensis HOM05D003469 ORTHO05D004084 1.6e-09 69.3 46 80.4
Sabra13G0107500 Salix brachista HOM05D000001 ORTHO05D000003 1.8e-08 65.9 184 35.9
Lsat_1_v5_gn_6_14080 Lactuca sativa HOM05D002718 ORTHO05D004084 3.0e-08 65.1 66 47.0
Medtr4g074700 Medicago truncatula HOM05D003469 ORTHO05D004084 5.2e-08 64.3 93 40.9
QL01p054481 Quercus lobata HOM05D003469 ORTHO05D004084 5.2e-08 64.3 44 59.1
MCO03G148 Micromonas commoda HOM05D003469 ORTHO05D004084 2.0e-07 62.4 636 21.1
AagrBONN_evm.TU.Sc2ySwM_362.2853 Anthoceros agrestis HOM05D003469 ORTHO05D004084 7.5e-07 60.5 69 42.0
Psat0s2166g0160 Pisum sativum HOM05D003469 ORTHO05D004084 6.4e-06 57.4 74 43.2


User provided reference genes

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