Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv15685 Davidia involucrata HOM05D000002 ORTHO05D000001 2.3e-136 488.8 233 100.0
Sopen01g011300 Solanum pennellii HOM05D000002 ORTHO05D000001 3.7e-17 92.8 79 46.8
Sopen01g011990 Solanum pennellii HOM05D000002 ORTHO05D000001 3.7e-17 92.8 79 46.8
Sopen01g026060 Solanum pennellii HOM05D000002 ORTHO05D000001 3.7e-17 92.8 79 46.8
Sopen01g026910 Solanum pennellii HOM05D000002 ORTHO05D000001 3.7e-17 92.8 79 46.8
Sopen01g027080 Solanum pennellii HOM05D000002 ORTHO05D000001 3.7e-17 92.8 79 46.8
Sopen02g004900 Solanum pennellii HOM05D000002 ORTHO05D000001 3.7e-17 92.8 79 46.8
Sopen02g010960 Solanum pennellii HOM05D000002 ORTHO05D000001 3.7e-17 92.8 79 46.8
Sopen02g011170 Solanum pennellii HOM05D000002 ORTHO05D000001 3.7e-17 92.8 79 46.8
Sopen02g033300 Solanum pennellii HOM05D000002 ORTHO05D000001 3.7e-17 92.8 79 46.8
Sopen03g016290 Solanum pennellii HOM05D000002 ORTHO05D000001 3.7e-17 92.8 79 46.8
Sopen03g020140 Solanum pennellii HOM05D000002 ORTHO05D000001 3.7e-17 92.8 79 46.8
Sopen04g008130 Solanum pennellii HOM05D000002 ORTHO05D000001 3.7e-17 92.8 79 46.8
Sopen04g020670 Solanum pennellii HOM05D000004 ORTHO05D000002 3.7e-17 92.8 79 46.8
Sopen04g021700 Solanum pennellii HOM05D000002 ORTHO05D000001 3.7e-17 92.8 79 46.8
Sopen04g022270 Solanum pennellii HOM05D000002 ORTHO05D000001 3.7e-17 92.8 79 46.8
Sopen04g024180 Solanum pennellii HOM05D000002 ORTHO05D000001 3.7e-17 92.8 79 46.8
Sopen04g024730 Solanum pennellii HOM05D000002 ORTHO05D000001 3.7e-17 92.8 79 46.8
Sopen05g008880 Solanum pennellii HOM05D000002 ORTHO05D000001 3.7e-17 92.8 79 46.8
Sopen05g009730 Solanum pennellii HOM05D000002 ORTHO05D000001 3.7e-17 92.8 79 46.8
Sopen05g016200 Solanum pennellii HOM05D000002 ORTHO05D000001 3.7e-17 92.8 79 46.8
Sopen05g019310 Solanum pennellii HOM05D000002 ORTHO05D000001 3.7e-17 92.8 79 46.8
Sopen05g021260 Solanum pennellii HOM05D000002 ORTHO05D000001 3.7e-17 92.8 79 46.8
Sopen05g021330 Solanum pennellii HOM05D000002 ORTHO05D000001 3.7e-17 92.8 79 46.8
Sopen05g021420 Solanum pennellii HOM05D000002 ORTHO05D000001 3.7e-17 92.8 79 46.8
Sopen06g017460 Solanum pennellii HOM05D000002 ORTHO05D000001 3.7e-17 92.8 79 46.8
Sopen06g018700 Solanum pennellii HOM05D000002 ORTHO05D000001 3.7e-17 92.8 79 46.8
Sopen07g002540 Solanum pennellii HOM05D000002 ORTHO05D000001 3.7e-17 92.8 79 46.8
Sopen07g025430 Solanum pennellii HOM05D000002 ORTHO05D000001 3.7e-17 92.8 79 46.8
Sopen08g006370 Solanum pennellii HOM05D000002 ORTHO05D000001 3.7e-17 92.8 79 46.8
Sopen08g016750 Solanum pennellii HOM05D000002 ORTHO05D000001 3.7e-17 92.8 79 46.8
Sopen08g018380 Solanum pennellii HOM05D000002 ORTHO05D000001 3.7e-17 92.8 79 46.8
Sopen08g018390 Solanum pennellii HOM05D000002 ORTHO05D000001 3.7e-17 92.8 79 46.8
Sopen08g023630 Solanum pennellii HOM05D000002 ORTHO05D000001 3.7e-17 92.8 79 46.8
Sopen09g007040 Solanum pennellii HOM05D000002 ORTHO05D000001 3.7e-17 92.8 79 46.8
Sopen09g007620 Solanum pennellii HOM05D000002 ORTHO05D000001 3.7e-17 92.8 79 46.8
Sopen09g021990 Solanum pennellii HOM05D000002 ORTHO05D000001 3.7e-17 92.8 79 46.8
Sopen09g022710 Solanum pennellii HOM05D000002 ORTHO05D000001 3.7e-17 92.8 79 46.8
Sopen09g028560 Solanum pennellii HOM05D000002 ORTHO05D000001 3.7e-17 92.8 79 46.8
Sopen10g020120 Solanum pennellii HOM05D000002 ORTHO05D000001 3.7e-17 92.8 79 46.8
Sopen10g023070 Solanum pennellii HOM05D000002 ORTHO05D000001 3.7e-17 92.8 79 46.8
Sopen10g028080 Solanum pennellii HOM05D000002 ORTHO05D000001 3.7e-17 92.8 79 46.8
Sopen11g011440 Solanum pennellii HOM05D000004 ORTHO05D000001 3.7e-17 92.8 79 46.8
Sopen11g014570 Solanum pennellii HOM05D000002 ORTHO05D000001 3.7e-17 92.8 79 46.8
Sopen11g019150 Solanum pennellii HOM05D000002 ORTHO05D000001 3.7e-17 92.8 79 46.8
Sopen11g024710 Solanum pennellii HOM05D000002 ORTHO05D000001 3.7e-17 92.8 79 46.8
Sopen12g018780 Solanum pennellii HOM05D000002 ORTHO05D000001 3.7e-17 92.8 79 46.8
Sopen12g021260 Solanum pennellii HOM05D000002 ORTHO05D000001 3.7e-17 92.8 79 46.8
Sopen12g023160 Solanum pennellii HOM05D000002 ORTHO05D000001 3.7e-17 92.8 79 46.8
Sopen12g023730 Solanum pennellii HOM05D000002 ORTHO05D000001 3.7e-17 92.8 79 46.8
Sopen12g032230 Solanum pennellii HOM05D000398 ORTHO05D000551 3.7e-17 92.8 79 46.8
Sopen04g020830 Solanum pennellii HOM05D000002 ORTHO05D000001 4.8e-17 92.4 79 46.8
Sopen09g013450 Solanum pennellii HOM05D000002 ORTHO05D000001 6.3e-17 92.0 79 46.8
Sopen07g011780 Solanum pennellii HOM05D000002 ORTHO05D000001 8.2e-17 91.7 79 46.8
Ca_24071_v3 Cicer arietinum L. HOM05D000002 ORTHO05D000001 1.1e-16 91.3 70 61.4
RcHm_v2.0_Chr5g0081471 Rosa chinensis HOM05D000002 ORTHO05D000001 1.4e-16 90.9 70 51.4
Sopen07g004430 Solanum pennellii HOM05D000002 ORTHO05D000001 1.8e-16 90.5 79 45.6
Sopen09g015500 Solanum pennellii HOM05D000002 ORTHO05D000001 1.8e-16 90.5 79 46.8
Sopen09g026100 Solanum pennellii HOM05D000232 ORTHO05D000001 2.4e-16 90.1 79 46.8
Sopen10g019420 Solanum pennellii HOM05D000004 ORTHO05D000002 2.4e-16 90.1 79 44.3
QL03p008741 Quercus lobata HOM05D000002 ORTHO05D000001 3.1e-16 89.7 70 55.7
QL08p032395 Quercus lobata HOM05D000002 ORTHO05D000001 3.1e-16 89.7 70 55.7
Sopen04g020510 Solanum pennellii HOM05D000002 ORTHO05D000001 3.1e-16 89.7 70 51.4
Sopen12g017000 Solanum pennellii HOM05D000002 ORTHO05D000001 7.0e-16 88.6 79 44.3
QL12p018234 Quercus lobata HOM05D000002 ORTHO05D000001 1.6e-15 87.4 70 52.9
Sopen01g018110 Solanum pennellii HOM05D000002 ORTHO05D000001 2.0e-15 87.0 79 44.3
Sopen02g010110 Solanum pennellii HOM05D000002 ORTHO05D000001 2.0e-15 87.0 70 48.6
QL08p041695 Quercus lobata HOM05D000002 ORTHO05D000001 2.6e-15 86.7 70 52.9
Sopen10g023440 Solanum pennellii HOM05D000002 ORTHO05D000001 2.6e-15 86.7 73 49.3
Sopen12g018950 Solanum pennellii HOM05D000002 ORTHO05D000001 3.5e-15 86.3 79 43.0
Sopen11g022300 Solanum pennellii HOM05D000002 ORTHO05D000001 4.5e-15 85.9 79 44.3
Sopen11g021970 Solanum pennellii HOM05D000014 ORTHO05D000001 7.7e-15 85.1 79 43.0
Lalb_Chr01g0006171 Lupinus albus HOM05D000002 ORTHO05D000001 2.9e-14 83.2 70 52.9
Lalb_Chr03g0030681 Lupinus albus HOM05D000002 ORTHO05D000001 2.9e-14 83.2 70 52.9
CSS0048162 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 5.0e-14 82.4 70 51.4
TWI15G1207 Tripterygium wilfordii HOM05D000002 ORTHO05D000001 5.0e-14 82.4 70 48.6
CSS0047378 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 6.5e-14 82.0 70 50.0
CSS0005689 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 8.5e-14 81.6 70 51.4
CSS0013919 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 8.5e-14 81.6 70 51.4
Dinv26241 Davidia involucrata HOM05D000281 ORTHO05D000290 1.1e-13 81.3 60 65.0
Lalb_Chr02g0142391 Lupinus albus HOM05D000002 ORTHO05D000001 2.5e-13 80.1 70 51.4
Lalb_Chr04g0251591 Lupinus albus HOM05D000002 ORTHO05D000001 2.5e-13 80.1 70 51.4
CSS0007234 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 4.2e-13 79.3 70 50.0
CSS0015031 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 4.2e-13 79.3 70 50.0
Ca_26996_v3 Cicer arietinum L. HOM05D000002 ORTHO05D000001 5.5e-13 79.0 70 54.3
CSS0029788 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.7e-12 76.6 70 50.0
Lalb_Chr02g0149271 Lupinus albus HOM05D000002 ORTHO05D000001 2.7e-12 76.6 67 52.2
CSS0038380 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 6.1e-12 75.5 70 47.1
QL01p035097 Quercus lobata HOM05D000002 ORTHO05D000001 1.0e-11 74.7 59 55.9
SHI14886 Sapria himalayana HOM05D000002 ORTHO05D000001 1.0e-11 74.7 67 52.2
Atru.chr8.1103 Acer truncatum HOM05D000002 ORTHO05D000001 2.3e-11 73.6 70 51.4
COL.COLO4_31801 Corchorus olitorius HOM05D000664 ORTHO05D000491 3.0e-11 73.2 157 34.4
QL04p017640 Quercus lobata HOM05D008040 ORTHO05D010075 4.4e-10 69.3 91 46.2
COL.COLO4_32997 Corchorus olitorius HOM05D000664 ORTHO05D000491 9.7e-10 68.2 107 36.4
vmacro17325 Vaccinium macrocarpon HOM05D008040 ORTHO05D010075 9.7e-10 68.2 97 40.2
Atru.chr2.1558 Acer truncatum HOM05D000003 ORTHO05D000167 1.3e-09 67.8 70 48.6
QL04p017690 Quercus lobata HOM05D008040 ORTHO05D010075 1.3e-09 67.8 91 46.2
vmacro17323 Vaccinium macrocarpon HOM05D008040 ORTHO05D010075 1.7e-09 67.4 97 39.2
PSO761G0098 Papaver somniferum HOM05D008040 ORTHO05D010075 4.8e-09 65.9 90 38.9
Sopen09g011930 Solanum pennellii HOM05D000004 ORTHO05D000002 4.8e-09 65.9 56 48.2
EL10Ac2g04156 Beta vulgaris HOM05D008040 ORTHO05D010075 1.8e-08 63.9 98 37.8
vmacro17324 Vaccinium macrocarpon HOM05D008040 ORTHO05D010075 1.8e-08 63.9 97 38.1
Nitab4.5_0005142g0030 Nicotiana tabacum HOM05D008040 ORTHO05D010075 2.4e-08 63.5 101 33.7
Solyc05g051583.1 Solanum lycopersicum HOM05D000664 ORTHO05D000491 2.4e-08 63.5 129 34.1
SGA_v2.0_scaffold136G35012 Striga asiatica HOM05D000664 ORTHO05D000491 2.4e-08 63.5 85 41.2
PGSC0003DMG400021824 Solanum tuberosum HOM05D000664 ORTHO05D000491 3.1e-08 63.2 129 34.1
AUR62017713 Chenopodium quinoa HOM05D008040 ORTHO05D010075 4.1e-08 62.8 90 40.0
COL.COLO4_37348 Corchorus olitorius HOM05D000664 ORTHO05D000491 4.1e-08 62.8 132 35.6
Thecc.03G149500 Theobroma cacao HOM05D000664 ORTHO05D000491 4.1e-08 62.8 141 34.8
CAN.G1242.1 Capsicum annuum HOM05D000002 ORTHO05D000001 5.3e-08 62.4 59 42.4
AUR62008579 Chenopodium quinoa HOM05D008040 ORTHO05D010075 5.3e-08 62.4 90 38.9
AUR62035995 Chenopodium quinoa HOM05D008040 ORTHO05D010075 7.0e-08 62.0 98 37.8
FvH4_1g15230 Fragaria vesca HOM05D000529 ORTHO05D000472 9.1e-08 61.6 66 43.9
FvH4_4g27782 Fragaria vesca HOM05D000002 ORTHO05D000001 9.1e-08 61.6 66 43.9
COL.COLO4_32999 Corchorus olitorius HOM05D000664 ORTHO05D000491 1.2e-07 61.2 156 32.1
QL01p053749 Quercus lobata HOM05D000002 ORTHO05D000001 1.2e-07 61.2 48 54.2
Sabra08G0010200 Salix brachista HOM05D008040 ORTHO05D010075 1.2e-07 61.2 104 39.4
Sabra08G0010400 Salix brachista HOM05D008040 ORTHO05D010075 1.2e-07 61.2 141 31.9
MD13G1235400 Malus domestica HOM05D000664 ORTHO05D000491 1.6e-07 60.8 150 33.3
Medtr0146s0070 Medicago truncatula HOM05D000002 ORTHO05D000001 1.6e-07 60.8 52 51.9
Sabra01G0178200 Salix brachista HOM05D000664 ORTHO05D000491 1.6e-07 60.8 150 32.0
Sc01g0008370 Simmondsia chinensis HOM05D000664 ORTHO05D000491 2.0e-07 60.5 146 29.5
Prupe.1G066400 Prunus persica HOM05D000664 ORTHO05D000491 7.7e-07 58.5 139 34.5
RcHm_v2.0_Chr2g0171331 Rosa chinensis HOM05D000002 ORTHO05D000001 7.7e-07 58.5 64 32.8
SGA_v2.0_scaffold3565G54362 Striga asiatica HOM05D000664 ORTHO05D000491 7.7e-07 58.5 105 34.3
TWI12G0677 Tripterygium wilfordii HOM05D008040 ORTHO05D010075 7.7e-07 58.5 144 30.6
RcHm_v2.0_Chr2g0151961 Rosa chinensis HOM05D000002 ORTHO05D000001 1.0e-06 58.2 64 34.4
Nitab4.5_0009785g0010 Nicotiana tabacum HOM05D000664 ORTHO05D000491 1.3e-06 57.8 111 35.1
Rhsim01G0017000 Rhododendron simsii HOM05D000664 ORTHO05D000491 1.3e-06 57.8 88 37.5
PGSC0003DMG400007218 Solanum tuberosum HOM05D000664 ORTHO05D000491 1.3e-06 57.8 95 36.8
Nitab4.5_0000375g0090 Nicotiana tabacum HOM05D000664 ORTHO05D000491 1.7e-06 57.4 94 36.2
vmacro06138 Vaccinium macrocarpon HOM05D000664 ORTHO05D000491 2.2e-06 57.0 110 36.4
MBI01_g31985_MAGBIO Magnolia biondii HOM05D000664 ORTHO05D000491 2.9e-06 56.6 94 37.2
Potri.013G109900 Populus trichocarpa HOM05D008040 ORTHO05D010075 2.9e-06 56.6 89 39.3
Potri.013G110300 Populus trichocarpa HOM05D008040 ORTHO05D010075 2.9e-06 56.6 89 39.3
RcHm_v2.0_Chr4g0396041 Rosa chinensis HOM05D000664 ORTHO05D000491 2.9e-06 56.6 105 34.3
RcHm_v2.0_Chr5g0059531 Rosa chinensis HOM05D000664 ORTHO05D000491 2.9e-06 56.6 119 33.6
MD16G1240000 Malus domestica HOM05D000664 ORTHO05D000491 3.8e-06 56.2 100 36.0
Rhsim03G0248900 Rhododendron simsii HOM05D000664 ORTHO05D000491 3.8e-06 56.2 113 36.3
SGA_v2.0_scaffold136G35030 Striga asiatica HOM05D000664 ORTHO05D000491 3.8e-06 56.2 83 37.3
CANSAT01G0762 Cannabis sativa HOM05D011629 ORTHO05D013267 5.0e-06 55.8 100 33.0
CANSAT01G1414 Cannabis sativa HOM05D011629 ORTHO05D013267 5.0e-06 55.8 100 33.0
Ca_02953_v3 Cicer arietinum L. HOM05D000002 ORTHO05D000001 5.0e-06 55.8 65 41.5
Ciclev10006596m.g Citrus clementina HOM05D008040 ORTHO05D010075 5.0e-06 55.8 92 35.9
Duzib068G1024 Durio zibethinus HOM05D000664 ORTHO05D000491 5.0e-06 55.8 141 34.0
FvH4_3g16171 Fragaria vesca HOM05D000002 ORTHO05D000001 5.0e-06 55.8 70 32.9
SGA_v2.0_scaffold69G23237 Striga asiatica HOM05D000664 ORTHO05D000491 5.0e-06 55.8 166 27.7
CSS0037188 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 6.5e-06 55.5 59 37.3
Ciclev10026974m.g Citrus clementina HOM05D008040 ORTHO05D010075 6.5e-06 55.5 91 34.1
COL.COLO4_31760 Corchorus olitorius HOM05D000664 ORTHO05D000491 6.5e-06 55.5 121 29.8
TAR161G0002 Trochodendron aralioides HOM05D000002 ORTHO05D000001 6.5e-06 55.5 72 33.3
AUR62012380 Chenopodium quinoa HOM05D000664 ORTHO05D000491 8.5e-06 55.1 90 37.8
DCAR_018082 Daucus carota HOM05D000664 ORTHO05D000491 8.5e-06 55.1 93 35.5
Duzib205G1254 Durio zibethinus HOM05D000664 ORTHO05D000491 8.5e-06 55.1 152 32.2
Gohir.D12G199300 Gossypium hirsutum HOM05D000664 ORTHO05D000491 8.5e-06 55.1 150 32.0
Gorai.008G214500 Gossypium raimondii HOM05D000664 ORTHO05D000491 8.5e-06 55.1 150 32.0
Lj3A384G19 Lonicera japonica HOM05D000664 ORTHO05D000491 8.5e-06 55.1 121 30.6
MBI05_g44031_MAGBIO Magnolia biondii HOM05D016110 ORTHO05D000491 8.5e-06 55.1 91 36.3
Manes.09G072126 Manihot esculenta HOM05D008040 ORTHO05D010075 8.5e-06 55.1 90 38.9
THA.LOC104817078 Tarenaya hassleriana HOM05D000002 ORTHO05D000001 8.5e-06 55.1 71 32.4


User provided reference genes

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