Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv14947 Davidia involucrata HOM05D000070 ORTHO05D006683 4.1e-254 880.9 456 100.0
Dinv20211 Davidia involucrata HOM05D000070 ORTHO05D006683 8.9e-124 448.0 335 72.5
Actinidia35238 Actinidia chinensis HOM05D000070 ORTHO05D006683 9.5e-118 427.9 439 54.4
CiPaw.11G166700 Carya illinoinensis HOM05D000070 ORTHO05D006683 9.2e-105 384.8 440 49.8
QL08p023642 Quercus lobata HOM05D000070 ORTHO05D006683 2.7e-104 383.3 439 49.4
GSVIVG01014274001 Vitis vinifera HOM05D000070 ORTHO05D006683 1.5e-102 377.5 437 49.7
Cfa020618 Carpinus fangiana HOM05D000070 ORTHO05D006683 6.2e-101 372.1 439 49.2
Haze_09387 Corylus avellana HOM05D000070 ORTHO05D006683 3.1e-100 369.8 437 47.4
Atru.chr2.2387 Acer truncatum HOM05D000070 ORTHO05D006683 1.2e-91 341.3 474 43.9
CSS0012964 Camellia sinensis var. sinensis HOM05D000070 ORTHO05D006683 9.9e-91 338.2 355 56.6
vmacro09518 Vaccinium macrocarpon HOM05D000070 ORTHO05D006683 2.2e-90 337.0 468 44.9
TAR624G0583 Trochodendron aralioides HOM05D000070 ORTHO05D006683 4.1e-89 332.8 450 44.2
MD11G1256000 Malus domestica HOM05D000070 ORTHO05D006683 3.4e-83 313.2 444 42.3
Duzib213G1081 Durio zibethinus HOM05D000070 ORTHO05D006683 4.9e-82 309.3 518 38.8
Ciclev10007229m.g Citrus clementina HOM05D000070 ORTHO05D006683 1.1e-81 308.1 439 42.8
Potri.011G141400 Populus trichocarpa HOM05D000070 ORTHO05D006683 1.9e-81 307.4 437 43.2
RcHm_v2.0_Chr5g0032311 Rosa chinensis HOM05D000070 ORTHO05D006683 7.1e-81 305.4 471 40.8
FAN11G2237 Fragaria x ananassa HOM05D000070 ORTHO05D006683 9.3e-81 305.1 518 38.4
FAN25G1528 Fragaria x ananassa HOM05D000070 ORTHO05D006683 1.6e-80 304.3 521 38.0
FAN21G0502 Fragaria x ananassa HOM05D000070 ORTHO05D006683 2.1e-80 303.9 518 38.0
Lj1A837G48 Lonicera japonica HOM05D000070 ORTHO05D006683 1.0e-79 301.6 446 41.7
Sabra11G0127000 Salix brachista HOM05D000070 ORTHO05D006683 1.0e-79 301.6 440 43.4
FAN16G3451 Fragaria x ananassa HOM05D000070 ORTHO05D006683 2.3e-79 300.4 524 38.0
Cpa.g.sc80.3 Carica papaya HOM05D006724 ORTHO05D006683 6.6e-79 298.9 438 43.2
Gorai.002G066800 Gossypium raimondii HOM05D000070 ORTHO05D006683 1.9e-78 297.4 520 39.0
Gohir.D01G047300 Gossypium hirsutum HOM05D000070 ORTHO05D006683 2.5e-78 297.0 520 39.0
FvH4_3g19240 Fragaria vesca HOM05D000070 ORTHO05D006683 7.3e-78 295.4 518 37.6
TWI38G2035 Tripterygium wilfordii HOM05D000070 ORTHO05D006683 1.6e-77 294.3 441 41.5
Manes.15G090100 Manihot esculenta HOM05D000070 ORTHO05D006683 2.1e-77 293.9 441 40.8
Thecc.07G098900 Theobroma cacao HOM05D000070 ORTHO05D006683 8.1e-77 292.0 519 38.5
Duzib170G1082 Durio zibethinus HOM05D000070 ORTHO05D006683 5.3e-76 289.3 519 37.4
Gohir.A01G060800 Gossypium hirsutum HOM05D000070 ORTHO05D006683 6.9e-76 288.9 520 38.5
Nn1g06393 Nelumbo nucifera HOM05D000070 ORTHO05D006683 1.9e-70 270.8 452 40.7
Cc05_g11650 Coffea canephora HOM05D000070 ORTHO05D006683 1.2e-67 261.5 438 39.3
Eucgr.F01177 Eucalyptus grandis HOM05D000070 ORTHO05D006683 1.7e-66 257.7 440 38.2
Gorai.004G029700 Gossypium raimondii HOM05D000070 ORTHO05D006683 7.1e-65 252.3 503 36.0
Gohir.D08G032300 Gossypium hirsutum HOM05D000070 ORTHO05D006683 1.2e-64 251.5 503 35.6
TPR.G7945 Trifolium pratense HOM05D000070 ORTHO05D006683 3.0e-63 246.9 438 34.9
Peaxi162Scf00069g01833 Petunia axillaris HOM05D000070 ORTHO05D006683 8.7e-63 245.4 438 38.1
PGSC0003DMG400012401 Solanum tuberosum HOM05D000070 ORTHO05D006683 1.2e-59 235.0 441 37.2
Glyma.12G227000 Glycine max HOM05D000070 ORTHO05D006683 6.5e-58 229.2 441 35.1
Medtr2g078630 Medicago truncatula HOM05D000070 ORTHO05D006683 6.5e-58 229.2 438 35.2
PSO541G4369 Papaver somniferum HOM05D000070 ORTHO05D006683 8.4e-58 228.8 457 35.4
ECA240G2408 Erigeron canadensis HOM05D000070 ORTHO05D006683 1.1e-57 228.4 442 36.4
Lj3g0013945 Lotus japonicus HOM05D000070 ORTHO05D006683 2.5e-57 227.3 460 35.4
DCAR_013128 Daucus carota HOM05D000070 ORTHO05D006683 9.3e-57 225.3 439 36.9
Lalb_Chr25g0286211 Lupinus albus HOM05D000070 ORTHO05D006683 6.0e-56 222.6 438 35.8
Sopen07g030990 Solanum pennellii HOM05D000070 ORTHO05D006683 3.0e-55 220.3 456 34.4
PGR083G0044 Punica granatum HOM05D000070 ORTHO05D006683 3.9e-55 219.9 443 36.8
TAR626G0446 Trochodendron aralioides HOM05D000070 ORTHO05D006683 3.9e-55 219.9 387 38.8
Solyc07g062770.2 Solanum lycopersicum HOM05D000070 ORTHO05D006683 6.7e-55 219.2 446 35.4
ClCG05G009240 Citrullus lanatus HOM05D000070 ORTHO05D006683 1.3e-53 214.9 442 35.5
Nitab4.5_0002019g0010 Nicotiana tabacum HOM05D000070 ORTHO05D006683 3.7e-53 213.4 437 35.0
Aqoxy1G02305 Aquilegia oxysepala HOM05D000070 ORTHO05D006683 6.3e-53 212.6 449 35.4
Glyma.13G273300 Glycine max HOM05D000070 ORTHO05D006683 6.3e-53 212.6 452 33.2
Nitab4.5_0000246g0030 Nicotiana tabacum HOM05D000070 ORTHO05D006683 1.4e-52 211.5 437 35.2
Psat5g241520 Pisum sativum HOM05D000070 ORTHO05D006683 2.4e-52 210.7 441 33.3
Lalb_Chr20g0109491 Lupinus albus HOM05D000070 ORTHO05D006683 3.1e-52 210.3 442 34.8
VMungo1080G0328 Vigna mungo HOM05D000070 ORTHO05D006683 6.9e-52 209.1 445 34.4
CAN.G162.29 Capsicum annuum HOM05D000070 ORTHO05D006683 1.2e-51 208.4 438 34.5
Phvul.005G069600 Phaseolus vulgaris HOM05D000070 ORTHO05D006683 1.5e-51 208.0 445 33.3
Ca_03533_v3 Cicer arietinum L. HOM05D000070 ORTHO05D006683 4.5e-51 206.5 438 33.1
MSTRG.14209 Avicennia marina HOM05D000070 ORTHO05D006683 7.7e-51 205.7 442 35.7
Sed0024008 Sechium edule HOM05D000070 ORTHO05D006683 1.7e-50 204.5 442 32.4
MELO3C019399.2 Cucumis melo HOM05D000070 ORTHO05D006683 9.4e-49 198.7 455 33.4
CsaV3_3G019540 Cucumis sativus L. HOM05D000070 ORTHO05D006683 3.9e-47 193.4 448 32.6
CANSAT35G1857 Cannabis sativa HOM05D000070 ORTHO05D006683 1.7e-45 188.0 447 33.8
AUR62036148 Chenopodium quinoa HOM05D000070 ORTHO05D006683 1.7e-45 188.0 484 31.4
arahy.Tifrunner.gnm1.ann1.48N9B9 Arachis hypogaea HOM05D000070 ORTHO05D006683 9.1e-44 182.2 446 32.3
arahy.Tifrunner.gnm1.ann1.T5288F Arachis hypogaea HOM05D000070 ORTHO05D006683 2.0e-43 181.0 446 32.5
AUR62019488 Chenopodium quinoa HOM05D000070 ORTHO05D006683 1.0e-42 178.7 487 31.0
THA.LOC104810458 Tarenaya hassleriana HOM05D000070 ORTHO05D006683 1.4e-41 174.9 506 30.8
Sp3g13330 Schrenkiella parvula HOM05D000070 ORTHO05D006683 6.1e-40 169.5 443 30.5
EL10Ac4g08256 Beta vulgaris HOM05D000070 ORTHO05D006683 7.9e-40 169.1 471 32.5
Thhalv10019880m.g Eutrema salsugineum HOM05D000070 ORTHO05D006683 1.4e-39 168.3 447 31.8
AL3G27480 Arabidopsis lyrata HOM05D000070 ORTHO05D006683 6.7e-39 166.0 454 30.6
Gohir.A08G021424 Gossypium hirsutum HOM05D000070 ORTHO05D006683 4.4e-38 163.3 321 35.8
C03p47510 Brassica napus HOM05D000070 ORTHO05D006683 1.7e-37 161.4 443 31.4
BolC3t17015H Brassica oleracea HOM05D000070 ORTHO05D006683 1.7e-37 161.4 443 31.4
BcaC01g03897 Brassica carinata HOM05D000070 ORTHO05D006683 8.2e-37 159.1 442 30.5
AT3G15120 Arabidopsis thaliana HOM05D000070 ORTHO05D006683 1.8e-36 157.9 448 30.4
Carub.0003s1477 Capsella rubella HOM05D000070 ORTHO05D006683 4.1e-36 156.8 441 28.8
SalBow7G0119 Salvia bowleyana HOM05D000070 ORTHO05D006683 5.3e-36 156.4 468 31.2
CARHR090100 Cardamine hirsuta HOM05D000070 ORTHO05D006683 1.2e-35 155.2 453 28.9
HanXRQChr13g0391161 Helianthus annuus HOM05D000070 ORTHO05D006683 1.2e-35 155.2 430 29.8
A03p39160 Brassica napus HOM05D000070 ORTHO05D006683 4.5e-35 153.3 441 29.9
BraA03t13065Z Brassica rapa HOM05D000070 ORTHO05D006683 4.5e-35 153.3 441 29.9
Aa31LG8G2340 Aethionema arabicum HOM05D000070 ORTHO05D006683 7.7e-35 152.5 437 29.7
Migut.H01962 Erythranthe guttata HOM05D000070 ORTHO05D006683 3.8e-34 150.2 449 32.1
CDE10G0809 Ceratophyllum demersum HOM05D000070 ORTHO05D006683 5.0e-34 149.8 439 29.8
ATR0602G265 Amborella trichopoda HOM05D000070 ORTHO05D006683 1.6e-32 144.8 456 28.7
SGA_v2.0_scaffold70G23693 Striga asiatica HOM05D000070 ORTHO05D006683 2.1e-32 144.4 442 29.9
ClCG04G000030 Citrullus lanatus HOM05D000070 ORTHO05D006683 3.7e-21 107.1 147 37.4
Os01g0668300 Oryza sativa ssp. japonica HOM05D000070 ORTHO05D006683 3.7e-21 107.1 460 25.0
Hma1.2p1_0416F.1_g148460 Hydrangea macrophylla HOM05D000070 ORTHO05D006683 2.4e-20 104.4 58 87.9
Zm00001eb157300 Zea mays HOM05D000070 ORTHO05D006683 3.1e-20 104.0 458 23.4
unitig_899.g15571 Utricularia gibba HOM05D000070 ORTHO05D006683 2.0e-19 101.3 424 26.7
Lsat_1_v5_gn_9_98220 Lactuca sativa HOM05D000070 ORTHO05D006683 5.0e-18 96.7 73 65.8
Ah.06g184760 Amaranthus hybridus HOM05D000070 ORTHO05D006683 3.2e-17 94.0 80 58.8
SEGI_00098 Sequoiadendron giganteum HOM05D000070 ORTHO05D006683 4.2e-17 93.6 383 26.6
CDE10G0784 Ceratophyllum demersum HOM05D000070 ORTHO05D006683 1.6e-16 91.7 65 72.3
Sc07g0002540 Simmondsia chinensis HOM05D000070 ORTHO05D006683 2.7e-16 90.9 58 79.3
HPP92_024566 Vanilla planifolia HOM05D000070 ORTHO05D006683 1.5e-14 85.1 89 50.6
SHI21482 Sapria himalayana HOM05D000070 ORTHO05D006683 5.7e-14 83.2 58 69.0
Psat5g066840 Pisum sativum HOM05D000255 ORTHO05D006683 8.3e-13 79.3 200 31.0


User provided reference genes

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