Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv14704 Davidia involucrata HOM05D004195 ORTHO05D005309 0.0e+00 1214.5 603 100.0
TAR381G1357 Trochodendron aralioides HOM05D004195 ORTHO05D005309 7.4e-304 1046.6 633 82.8
TAR625G0293 Trochodendron aralioides HOM05D004195 ORTHO05D005309 3.8e-300 1034.2 628 82.0
Actinidia21272 Actinidia chinensis HOM05D004195 ORTHO05D005309 3.0e-297 1024.6 633 81.0
Actinidia15207 Actinidia chinensis HOM05D004195 ORTHO05D005309 5.2e-297 1023.8 633 81.4
Lj7C351T8 Lonicera japonica HOM05D004195 ORTHO05D005309 6.7e-297 1023.5 631 81.0
CSS0005980 Camellia sinensis var. sinensis HOM05D004195 ORTHO05D005309 3.3e-296 1021.1 633 80.9
Manes.18G083251 Manihot esculenta HOM05D004195 ORTHO05D005309 7.5e-296 1020.0 624 80.4
Rhsim11G0072300 Rhododendron simsii HOM05D004195 ORTHO05D005309 7.2e-291 1003.4 680 75.7
Ciclev10000592m.g Citrus clementina HOM05D004195 ORTHO05D005309 1.6e-290 1002.3 633 78.2
TWI60G0549 Tripterygium wilfordii HOM05D004195 ORTHO05D005309 1.6e-290 1002.3 630 78.6
CiPaw.16G022400 Carya illinoinensis HOM05D004195 ORTHO05D005309 1.8e-289 998.8 634 78.2
GSVIVG01008799001 Vitis vinifera HOM05D004195 ORTHO05D005309 6.8e-289 996.9 650 77.8
Sabra02G0060800 Salix brachista HOM05D004195 ORTHO05D005309 8.8e-289 996.5 623 78.5
Potri.002G077400 Populus trichocarpa HOM05D004195 ORTHO05D005309 1.2e-288 996.1 623 77.8
Atru.chr13.1591 Acer truncatum HOM05D004195 ORTHO05D005309 7.5e-288 993.4 631 77.5
TWI34G0939 Tripterygium wilfordii HOM05D004195 ORTHO05D005309 2.2e-287 991.9 633 78.4
CiPaw.15G030800 Carya illinoinensis HOM05D004195 ORTHO05D005309 4.8e-287 990.7 632 77.8
Peaxi162Scf00946g00016 Petunia axillaris HOM05D004195 ORTHO05D005309 5.4e-286 987.3 614 78.3
Cfa018421 Carpinus fangiana HOM05D004195 ORTHO05D005309 2.0e-285 985.3 632 77.7
PGSC0003DMG400023024 Solanum tuberosum HOM05D004195 ORTHO05D005309 2.7e-285 984.9 629 76.8
Thecc.08G133900 Theobroma cacao HOM05D004195 ORTHO05D005309 8.6e-284 979.9 627 76.6
CAN.G405.5 Capsicum annuum HOM05D004195 ORTHO05D005309 1.5e-283 979.2 630 76.5
FAN20G1489 Fragaria x ananassa HOM05D004195 ORTHO05D005309 1.5e-283 979.2 619 78.5
SGA_v2.0_scaffold7G03728 Striga asiatica HOM05D004195 ORTHO05D005309 4.2e-283 977.6 630 76.3
vmacro00869 Vaccinium macrocarpon HOM05D004195 ORTHO05D005309 5.5e-283 977.2 603 81.4
Sopen04g025940 Solanum pennellii HOM05D004195 ORTHO05D005309 7.2e-283 976.9 627 75.9
Nn5g28450 Nelumbo nucifera HOM05D004195 ORTHO05D005309 9.5e-283 976.5 583 82.5
PGR042G0897 Punica granatum HOM05D004195 ORTHO05D005309 9.5e-283 976.5 634 75.4
Aqoxy6G00296 Aquilegia oxysepala HOM05D004195 ORTHO05D005309 2.8e-282 974.9 614 79.3
Peaxi162Scf00066g00527 Petunia axillaris HOM05D004195 ORTHO05D005309 2.8e-282 974.9 627 76.6
Solyc04g058070.3 Solanum lycopersicum HOM05D004195 ORTHO05D005309 2.8e-282 974.9 621 76.3
DCAR_003592 Daucus carota HOM05D004195 ORTHO05D005309 3.6e-282 974.5 642 76.5
MSTRG.25350 Avicennia marina HOM05D004195 ORTHO05D005309 2.3e-281 971.8 631 75.4
Cc10_g13640 Coffea canephora HOM05D004195 ORTHO05D005309 4.0e-281 971.1 627 77.2
Migut.C01079 Erythranthe guttata HOM05D004195 ORTHO05D005309 4.0e-281 971.1 626 76.0
Sed0021205 Sechium edule HOM05D004195 ORTHO05D005309 5.2e-281 970.7 621 77.5
Gorai.004G254500 Gossypium raimondii HOM05D004195 ORTHO05D005309 8.9e-281 969.9 631 75.4
Gohir.A08G221616 Gossypium hirsutum HOM05D004195 ORTHO05D005309 2.0e-280 968.8 631 75.1
SalBow7G3728 Salvia bowleyana HOM05D004195 ORTHO05D005309 3.4e-280 968.0 619 77.1
MELO3C008467.2 Cucumis melo HOM05D004195 ORTHO05D005309 4.9e-279 964.1 621 77.5
RcHm_v2.0_Chr6g0296821 Rosa chinensis HOM05D004195 ORTHO05D005309 2.0e-277 958.7 604 78.1
Prupe.1G488700 Prunus persica HOM05D004195 ORTHO05D005309 2.7e-277 958.4 622 77.3
HanXRQChr02g0055521 Helianthus annuus HOM05D004195 ORTHO05D005309 4.5e-277 957.6 629 74.7
FAN27G3503 Fragaria x ananassa HOM05D004195 ORTHO05D005309 7.8e-277 956.8 657 74.0
CsaV3_6G034020 Cucumis sativus L. HOM05D004195 ORTHO05D005309 1.3e-276 956.1 621 77.0
unitig_748.g7692 Utricularia gibba HOM05D004195 ORTHO05D005309 5.0e-276 954.1 633 74.2
MD15G1133100 Malus domestica HOM05D004195 ORTHO05D005309 6.6e-276 953.7 620 77.3
FAN15G2696 Fragaria x ananassa HOM05D004195 ORTHO05D005309 3.3e-275 951.4 657 73.5
HanXRQChr14g0452241 Helianthus annuus HOM05D004195 ORTHO05D005309 5.6e-275 950.7 632 73.6
AUR62007701 Chenopodium quinoa HOM05D004195 ORTHO05D005309 2.8e-274 948.3 627 74.5
FAN24G0605 Fragaria x ananassa HOM05D004195 ORTHO05D005309 2.8e-274 948.3 648 74.1
THA.LOC104808371 Tarenaya hassleriana HOM05D004195 ORTHO05D000001 2.8e-274 948.3 602 76.6
Hund17352 Selenicereus undatus HOM05D004195 ORTHO05D005309 3.6e-274 948.0 652 73.0
Aa31LG9G14170 Aethionema arabicum HOM05D004195 ORTHO05D005309 4.7e-274 947.6 629 73.9
ClCG08G006050 Citrullus lanatus HOM05D004195 ORTHO05D005309 8.0e-274 946.8 622 76.8
Gorai.013G108400 Gossypium raimondii HOM05D004195 ORTHO05D005309 8.0e-274 946.8 633 74.6
Nitab4.5_0000317g0080 Nicotiana tabacum HOM05D004195 ORTHO05D005309 8.0e-274 946.8 603 77.3
PSO729G0087 Papaver somniferum HOM05D004195 ORTHO05D005309 8.0e-274 946.8 625 75.2
Gohir.D03G063000 Gossypium hirsutum HOM05D004195 ORTHO05D005309 1.4e-273 946.0 633 74.2
MSTRG.1402 Avicennia marina HOM05D004195 ORTHO05D005309 4.0e-273 944.5 627 74.8
PSO541G1755 Papaver somniferum HOM05D004195 ORTHO05D005309 1.2e-272 943.0 618 75.9
Carub.0008s1270 Capsella rubella HOM05D004195 ORTHO05D005309 2.6e-272 941.8 615 74.6
ECA233G3807 Erigeron canadensis HOM05D004195 ORTHO05D005309 2.6e-272 941.8 609 75.7
PSO724G0104 Papaver somniferum HOM05D004195 ORTHO05D005309 5.8e-272 940.6 625 74.6
Oeu045951.3 Olea europaea HOM05D004195 ORTHO05D005309 7.5e-272 940.3 645 73.0
ECA238G0374 Erigeron canadensis HOM05D004195 ORTHO05D005309 1.3e-271 939.5 630 72.9
EL10Ac1g01366 Beta vulgaris HOM05D004195 ORTHO05D005309 2.9e-271 938.3 628 73.6
A09p55650 Brassica napus HOM05D004195 ORTHO05D005309 6.4e-271 937.2 612 75.2
BraA09t40966Z Brassica rapa HOM05D004195 ORTHO05D005309 6.4e-271 937.2 612 75.2
Nitab4.5_0002557g0050 Nicotiana tabacum HOM05D004195 ORTHO05D005309 8.3e-271 936.8 627 74.5
C08p38640 Brassica napus HOM05D004195 ORTHO05D005309 1.1e-270 936.4 612 75.2
Eucgr.F03856 Eucalyptus grandis HOM05D004195 ORTHO05D005309 2.4e-270 935.3 637 74.1
AT5G52560 Arabidopsis thaliana HOM05D004195 ORTHO05D005309 3.2e-270 934.9 615 74.1
Sp4g04790 Schrenkiella parvula HOM05D004195 ORTHO05D005309 4.1e-270 934.5 631 73.4
BcaC07g40866 Brassica carinata HOM05D004195 ORTHO05D005309 5.4e-270 934.1 612 75.0
BolC8t51435H Brassica oleracea HOM05D004195 ORTHO05D005309 5.4e-270 934.1 612 75.0
Lsat_1_v5_gn_2_99200 Lactuca sativa HOM05D004195 ORTHO05D005309 1.2e-269 932.9 634 73.3
AL8G27030 Arabidopsis lyrata HOM05D004195 ORTHO05D005309 1.6e-269 932.6 615 73.8
CARHR265560 Cardamine hirsuta HOM05D004195 ORTHO05D005309 2.3e-268 928.7 614 74.4
CANSAT25G3797 Cannabis sativa HOM05D004195 ORTHO05D005309 7.3e-267 923.7 637 72.2
BcaB08g35185 Brassica carinata HOM05D004195 ORTHO05D005309 1.4e-265 919.5 612 73.5
VMungo1309G1545 Vigna mungo HOM05D004195 ORTHO05D005309 5.8e-264 914.1 607 74.5
Lj1g0006497 Lotus japonicus HOM05D004195 ORTHO05D005309 7.5e-264 913.7 604 74.8
Lalb_Chr23g0271201 Lupinus albus HOM05D004195 ORTHO05D005309 9.8e-264 913.3 609 74.1
Phvul.009G130500 Phaseolus vulgaris HOM05D004195 ORTHO05D005309 1.7e-263 912.5 607 74.5
Glyma.04G245100 Glycine max HOM05D004195 ORTHO05D005309 3.7e-263 911.4 612 73.7
TPR.G6326 Trifolium pratense HOM05D004195 ORTHO05D005309 7.8e-261 903.7 609 73.1
Zm00001eb226930 Zea mays HOM05D004195 ORTHO05D005309 1.0e-260 903.3 609 72.7
Medtr3g088650 Medicago truncatula HOM05D004195 ORTHO05D005309 1.3e-260 902.9 607 73.6
FvH4_2g28000 Fragaria vesca HOM05D004195 ORTHO05D005309 2.5e-259 898.7 572 77.6
Psat5g084360 Pisum sativum HOM05D004195 ORTHO05D005309 6.2e-258 894.0 607 72.7
Thhalv10000457m.g Eutrema salsugineum HOM05D004195 ORTHO05D005309 8.9e-257 890.2 611 72.8
Os06g0701200 Oryza sativa ssp. japonica HOM05D004195 ORTHO05D005309 2.7e-253 878.6 618 69.6
HPP92_005775 Vanilla planifolia HOM05D004195 ORTHO05D005309 7.8e-253 877.1 624 70.8
Gohir.A05G238300 Gossypium hirsutum HOM05D004195 ORTHO05D005309 1.7e-252 875.9 636 69.5
ATR1001G002 Amborella trichopoda HOM05D004195 ORTHO05D005309 2.3e-252 875.5 627 69.2
Hma1.2p1_0880F.1_g231850 Hydrangea macrophylla HOM05D004195 ORTHO05D005309 6.2e-250 867.5 497 85.5
SGA_v2.0_scaffold52G18908 Striga asiatica HOM05D004195 ORTHO05D005309 6.2e-250 867.5 577 74.5
CDE07G0325 Ceratophyllum demersum HOM05D004195 ORTHO05D005309 1.2e-248 863.2 619 69.5
Gohir.A10G100400 Gossypium hirsutum HOM05D004195 ORTHO05D005309 1.2e-248 863.2 579 74.4
Sc26g0002830 Simmondsia chinensis HOM05D004195 ORTHO05D005309 5.8e-248 860.9 569 75.2
HPP92_009336 Vanilla planifolia HOM05D004195 ORTHO05D005309 1.6e-245 852.8 628 68.3
Haze_17642 Corylus avellana HOM05D004195 ORTHO05D005309 1.3e-244 849.7 645 69.6
SEGI_41147 Sequoiadendron giganteum HOM05D004195 ORTHO05D005309 9.6e-243 843.6 629 67.6
Lj4C664G15 Lonicera japonica HOM05D004195 ORTHO05D005309 2.8e-242 842.0 574 74.4
PSO675G4690 Papaver somniferum HOM05D004195 ORTHO05D005309 1.5e-240 836.3 586 71.7
Oeu047171.1 Olea europaea HOM05D004195 ORTHO05D005309 4.6e-237 824.7 581 70.9
Cpa.g.sc64.151 Carica papaya HOM05D004195 ORTHO05D005309 5.1e-236 821.2 521 78.1
Ca_16614_v3 Cicer arietinum L. HOM05D004195 ORTHO05D005309 6.6e-236 820.8 555 73.5
arahy.Tifrunner.gnm1.ann1.8W34DS Arachis hypogaea HOM05D004195 ORTHO05D005309 5.6e-235 817.8 554 73.6
HPP92_005816 Vanilla planifolia HOM05D004195 ORTHO05D005309 1.8e-233 812.8 624 66.7
arahy.Tifrunner.gnm1.ann1.MX6LT2 Arachis hypogaea HOM05D004195 ORTHO05D005309 1.2e-232 810.1 561 72.5
arahy.Tifrunner.gnm1.ann1.TVXF2I Arachis hypogaea HOM05D004195 ORTHO05D005309 1.2e-232 810.1 561 72.5
BcaB08g36106 Brassica carinata HOM05D004195 ORTHO05D005309 3.0e-228 795.4 613 67.5
Ah.04g163390 Amaranthus hybridus HOM05D004195 ORTHO05D005309 1.4e-222 776.5 519 73.8
Glyma.06G118100 Glycine max HOM05D004195 ORTHO05D005309 1.2e-216 756.9 471 77.9
SHI09238 Sapria himalayana HOM05D004195 ORTHO05D005309 6.5e-215 751.1 626 62.0
Duzib093G0036 Durio zibethinus HOM05D004195 ORTHO05D005309 7.4e-211 737.6 991 44.7
SMO144G0039 Selaginella moellendorffii HOM05D004195 ORTHO05D005309 2.8e-210 735.7 591 62.6
Pp3c14_26160 Physcomitrium patens HOM05D004195 ORTHO05D005309 6.7e-204 714.5 594 59.3
Mapoly0020s0171 Marchantia polymorpha HOM05D004195 ORTHO05D005309 8.8e-204 714.1 604 60.1
Lj4A674G55 Lonicera japonica HOM05D004195 ORTHO05D005309 6.3e-202 708.0 594 63.3
AUR62013440 Chenopodium quinoa HOM05D004195 ORTHO05D005309 7.2e-190 667.9 443 75.4
Gohir.A02G111000 Gossypium hirsutum HOM05D004195 ORTHO05D005309 1.5e-187 660.2 428 76.4
CBR_g38016 Chara braunii HOM05D004195 ORTHO05D005309 5.2e-180 635.2 619 55.6
Cre14.g621751 Chlamydomonas reinhardtii HOM05D004195 ORTHO05D005309 1.6e-165 587.0 612 52.6
MCO16G082 Micromonas commoda HOM05D004195 ORTHO05D005309 5.2e-164 582.0 610 51.1
MBI19_g18107_MAGBIO Magnolia biondii HOM05D004195 ORTHO05D005309 1.4e-161 573.9 634 52.5
Dinv27262 Davidia involucrata HOM05D004195 ORTHO05D005309 2.0e-160 570.1 336 83.9
SEGI_17681 Sequoiadendron giganteum HOM05D004195 ORTHO05D005309 5.8e-155 552.0 393 70.5
Gorai.005G087200 Gossypium raimondii HOM05D004195 ORTHO05D005309 2.9e-154 549.7 501 59.1
Zm00001eb272890 Zea mays HOM05D004195 ORTHO05D005309 7.8e-144 515.0 339 74.0
PRCOL_00000078 Prasinoderma coloniale HOM05D004195 ORTHO05D005309 7.3e-142 508.4 603 47.8
Manes.02G169300 Manihot esculenta HOM05D004195 ORTHO05D005309 5.2e-140 502.3 356 71.1
AagrBONN_evm.TU.Sc2ySwM_228.475 Anthoceros agrestis HOM05D004195 ORTHO05D005309 6.8e-140 501.9 433 58.9
CDE06G1518 Ceratophyllum demersum HOM05D004195 ORTHO05D005309 8.1e-109 398.7 297 67.7
Gohir.D02G077650 Gossypium hirsutum HOM05D004195 ORTHO05D005309 3.4e-107 393.3 400 55.8
CDE06G0343 Ceratophyllum demersum HOM05D004195 ORTHO05D005309 6.5e-106 389.0 271 69.4
Sed0024885 Sechium edule HOM05D004195 ORTHO05D005309 2.5e-102 377.1 267 70.4
Pp3c7_22840 Physcomitrium patens HOM05D004195 ORTHO05D005309 1.2e-99 368.2 537 40.4
HPP92_005823 Vanilla planifolia HOM05D004195 ORTHO05D005309 2.2e-98 364.0 277 66.1
Zm00001eb215830 Zea mays HOM05D004195 ORTHO05D005309 6.1e-96 355.9 230 75.7
Dinv27263 Davidia involucrata HOM05D004195 ORTHO05D005309 5.7e-94 349.4 194 89.2
Duzib116G0462 Durio zibethinus HOM05D004195 ORTHO05D005309 2.0e-78 297.7 386 45.3
Sopen04g025970 Solanum pennellii HOM05D004195 ORTHO05D005309 4.1e-76 290.0 186 73.1
AUR62013439 Chenopodium quinoa HOM05D004195 ORTHO05D005309 1.9e-73 281.2 188 72.3
Zm00001eb237030 Zea mays HOM05D004195 ORTHO05D005309 1.7e-66 258.1 144 85.4
Sed0012376 Sechium edule HOM05D004195 ORTHO05D005309 3.7e-45 187.2 126 74.6
Lsat_1_v5_gn_6_43121 Lactuca sativa HOM05D004195 ORTHO05D005309 1.9e-41 174.9 266 44.0
Lsat_1_v5_gn_6_45121 Lactuca sativa HOM05D004195 ORTHO05D035846 1.6e-40 171.8 249 43.4
Cpa.g.c44850 Carica papaya HOM05D004195 ORTHO05D005309 1.4e-39 168.7 112 75.0
Gohir.D08G239084 Gossypium hirsutum HOM05D004195 ORTHO05D005309 1.9e-36 158.3 112 69.6
Ah.04g163400 Amaranthus hybridus HOM05D004195 ORTHO05D005309 1.1e-33 149.1 90 75.6
HPP92_009371 Vanilla planifolia HOM05D004195 ORTHO05D005309 1.1e-31 142.5 126 59.5
Hund26746 Selenicereus undatus HOM05D004195 ORTHO05D005309 8.9e-31 139.4 114 63.2
Lsat_1_v5_gn_6_43041 Lactuca sativa HOM05D004195 ORTHO05D035846 3.5e-27 127.5 389 27.8
Duzib213G0704 Durio zibethinus HOM05D004195 ORTHO05D005309 1.1e-23 115.9 80 63.8
vmacro11216 Vaccinium macrocarpon HOM05D004195 ORTHO05D050721 6.8e-23 113.2 90 63.3
QL10p065861 Quercus lobata HOM05D001716 ORTHO05D004234 7.6e-22 109.8 56 89.3
FAN15G2766 Fragaria x ananassa HOM05D004195 ORTHO05D005309 1.2e-19 102.4 109 52.3
Hund26745 Selenicereus undatus HOM05D004195 ORTHO05D005309 2.1e-19 101.7 71 67.6
SMO351G0243 Selaginella moellendorffii HOM05D003927 ORTHO05D004905 2.4e-15 88.2 335 26.3
FAN26G1170 Fragaria x ananassa HOM05D004195 ORTHO05D035846 3.8e-13 80.9 37 91.9
CANSAT54G2179 Cannabis sativa HOM05D005470 ORTHO05D006855 9.3e-12 76.3 47 76.6
Haze_26176 Corylus avellana HOM05D003927 ORTHO05D004905 1.6e-11 75.5 299 24.7
Mapoly0019s0078 Marchantia polymorpha HOM05D007300 ORTHO05D009301 1.6e-11 75.5 206 24.3
Lsat_1_v5_gn_2_61101 Lactuca sativa HOM05D003927 ORTHO05D004905 2.1e-11 75.1 364 25.5
Gohir.D07G155733 Gossypium hirsutum HOM05D004195 ORTHO05D217344 4.6e-11 73.9 42 78.6
RcHm_v2.0_Chr3g0470721 Rosa chinensis HOM05D004195 ORTHO05D050721 1.3e-10 72.4 39 87.2
Os08g0206900 Oryza sativa ssp. japonica HOM05D003927 ORTHO05D004905 2.3e-10 71.6 327 25.4
Lsat_1_v5_gn_9_125000 Lactuca sativa HOM05D004195 ORTHO05D005309 1.5e-09 68.9 72 47.2
Pp3c15_14250 Physcomitrium patens HOM05D007300 ORTHO05D009301 1.5e-09 68.9 241 23.2
MBI11_g47560_MAGBIO Magnolia biondii HOM05D002408 ORTHO05D002534 3.3e-09 67.8 45 68.9
QL05p063882 Quercus lobata HOM05D001716 ORTHO05D004234 1.6e-08 65.5 35 82.9
HPP92_005821 Vanilla planifolia HOM05D004195 ORTHO05D429708 1.6e-08 65.5 107 38.3
VMungo0720G0521 Vigna mungo HOM05D000196 ORTHO05D000279 2.8e-08 64.7 84 44.0
Hma1.2p1_0349F.1_g132280 Hydrangea macrophylla HOM05D004195 ORTHO05D005309 4.0e-07 60.8 70 48.6
MBI15_g02237_MAGBIO Magnolia biondii HOM05D000738 ORTHO05D011926 3.4e-06 57.8 41 65.9


User provided reference genes

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