Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv14386 Davidia involucrata HOM05D003986 ORTHO05D004916 0.0e+00 3462.2 1807 100.0
Dinv11756 Davidia involucrata HOM05D003986 ORTHO05D004916 0.0e+00 2995.7 1900 85.1
Actinidia12415 Actinidia chinensis HOM05D003986 ORTHO05D004916 0.0e+00 2686.0 1896 76.7
GSVIVG01011619001 Vitis vinifera HOM05D003986 ORTHO05D004916 0.0e+00 2524.6 1854 74.2
CiPaw.06G055800 Carya illinoinensis HOM05D003986 ORTHO05D004916 0.0e+00 2508.8 1902 72.3
Manes.17G086100 Manihot esculenta HOM05D003986 ORTHO05D004916 0.0e+00 2501.1 1907 71.9
TWI74G0603 Tripterygium wilfordii HOM05D003986 ORTHO05D004916 0.0e+00 2487.2 1904 71.4
Atru.chr11.800 Acer truncatum HOM05D003986 ORTHO05D004916 0.0e+00 2472.2 1905 72.0
Nn4g24477 Nelumbo nucifera HOM05D003986 ORTHO05D004916 0.0e+00 2468.0 1875 72.7
Gohir.A03G112200 Gossypium hirsutum HOM05D003986 ORTHO05D004916 0.0e+00 2434.1 1896 71.8
Potri.013G085000 Populus trichocarpa HOM05D003986 ORTHO05D004916 0.0e+00 2429.4 1898 69.4
Prupe.3G150800 Prunus persica HOM05D003986 ORTHO05D004916 0.0e+00 2422.9 1898 71.3
CANSAT78G0669 Cannabis sativa HOM05D003986 ORTHO05D004916 0.0e+00 2416.7 1872 71.8
DCAR_026811 Daucus carota HOM05D003986 ORTHO05D004916 0.0e+00 2409.4 1926 69.1
MELO3C005265.2 Cucumis melo HOM05D003986 ORTHO05D004916 0.0e+00 2405.6 1903 69.5
Glyma.05G241400 Glycine max HOM05D003986 ORTHO05D004916 0.0e+00 2405.6 1896 68.8
Glyma.08G048400 Glycine max HOM05D003986 ORTHO05D004916 0.0e+00 2405.2 1896 69.9
CsaV3_5G027880 Cucumis sativus L. HOM05D003986 ORTHO05D004916 0.0e+00 2399.4 1904 69.1
Potri.019G054600 Populus trichocarpa HOM05D003986 ORTHO05D004916 0.0e+00 2399.0 1898 69.9
Thecc.02G306600 Theobroma cacao HOM05D003986 ORTHO05D004916 0.0e+00 2397.1 1870 71.0
MD09G1258800 Malus domestica HOM05D003986 ORTHO05D004916 0.0e+00 2394.4 1892 70.3
Gorai.005G152800 Gossypium raimondii HOM05D003986 ORTHO05D004916 0.0e+00 2392.5 1896 70.9
VMungo0251G0132 Vigna mungo HOM05D003986 ORTHO05D004916 0.0e+00 2385.9 1898 69.3
Phvul.002G324500 Phaseolus vulgaris HOM05D003986 ORTHO05D004916 0.0e+00 2381.7 1896 69.1
Peaxi162Scf00937g00119 Petunia axillaris HOM05D003986 ORTHO05D004916 0.0e+00 2375.9 1873 69.4
arahy.Tifrunner.gnm1.ann1.R76IPR Arachis hypogaea HOM05D003986 ORTHO05D004916 0.0e+00 2373.6 1911 68.8
arahy.Tifrunner.gnm1.ann1.374THF Arachis hypogaea HOM05D003986 ORTHO05D004916 0.0e+00 2369.7 1932 68.2
Sed0014719 Sechium edule HOM05D003986 ORTHO05D004916 0.0e+00 2364.3 1919 66.4
Lalb_Chr05g0222051 Lupinus albus HOM05D003986 ORTHO05D004916 0.0e+00 2350.9 1892 68.3
TAR629G0821 Trochodendron aralioides HOM05D003986 ORTHO05D004916 0.0e+00 2339.3 1672 74.7
MSTRG.2114 Avicennia marina HOM05D003986 ORTHO05D004916 0.0e+00 2334.7 1873 68.1
Lj4g0022556 Lotus japonicus HOM05D003986 ORTHO05D004916 0.0e+00 2328.1 1896 68.7
Migut.E00504 Erythranthe guttata HOM05D003986 ORTHO05D004916 0.0e+00 2325.1 1873 68.4
Lalb_Chr16g0387401 Lupinus albus HOM05D003986 ORTHO05D004916 0.0e+00 2322.7 1895 67.5
CSS0009129 Camellia sinensis var. sinensis HOM05D003986 ORTHO05D004916 0.0e+00 2322.0 1735 73.9
TPR.G12867 Trifolium pratense HOM05D003986 ORTHO05D004916 0.0e+00 2315.8 1894 68.4
COL.COLO4_06656 Corchorus olitorius HOM05D003986 ORTHO05D004916 0.0e+00 2315.0 1936 68.2
ClCG01G006690 Citrullus lanatus HOM05D003986 ORTHO05D004916 0.0e+00 2312.0 2112 62.1
Psat7g004480 Pisum sativum HOM05D003986 ORTHO05D004916 0.0e+00 2301.9 1896 67.7
Sopen05g014610 Solanum pennellii HOM05D003986 ORTHO05D004916 0.0e+00 2298.1 1874 69.2
Aqoxy3G04028 Aquilegia oxysepala HOM05D003986 ORTHO05D004916 0.0e+00 2295.4 1881 67.4
Eucgr.B02697 Eucalyptus grandis HOM05D003986 ORTHO05D004916 0.0e+00 2295.4 1893 66.9
Ca_17244_v3 Cicer arietinum L. HOM05D003986 ORTHO05D004916 0.0e+00 2294.2 1896 67.6
Solyc05g017890.4 Solanum lycopersicum HOM05D003986 ORTHO05D004916 0.0e+00 2291.5 1874 69.2
Sabra13G0078400 Salix brachista HOM05D003986 ORTHO05D004916 0.0e+00 2283.4 1992 65.5
Haze_08333 Corylus avellana HOM05D003986 ORTHO05D004916 0.0e+00 2280.4 2099 64.1
QL03p038358 Quercus lobata HOM05D003986 ORTHO05D004916 0.0e+00 2277.3 1739 72.9
CAN.G206.116 Capsicum annuum HOM05D003986 ORTHO05D004916 0.0e+00 2273.8 1880 68.0
Medtr8g106090 Medicago truncatula HOM05D003986 ORTHO05D004916 0.0e+00 2263.4 1898 66.8
PGR142G4089 Punica granatum HOM05D003986 ORTHO05D004916 0.0e+00 2254.6 1880 66.3
PSO782G5475 Papaver somniferum HOM05D003986 ORTHO05D004916 0.0e+00 2230.7 1906 65.4
ECA246G1343 Erigeron canadensis HOM05D003986 ORTHO05D004916 0.0e+00 2230.3 1856 67.5
EL10Ac6g14201 Beta vulgaris HOM05D003986 ORTHO05D004916 0.0e+00 2199.9 1881 66.0
Medtr7g117220 Medicago truncatula HOM05D003986 ORTHO05D004916 0.0e+00 2192.2 1892 65.1
HanXRQChr12g0381871 Helianthus annuus HOM05D003986 ORTHO05D004916 0.0e+00 2190.6 1870 67.0
Sabra19G0063600 Salix brachista HOM05D003986 ORTHO05D004916 0.0e+00 2176.0 2235 56.9
Ah.02g127910 Amaranthus hybridus HOM05D003986 ORTHO05D004916 0.0e+00 2172.1 1896 64.5
PSO063G2585 Papaver somniferum HOM05D003986 ORTHO05D004916 0.0e+00 2171.0 1869 65.1
RcHm_v2.0_Chr4g0442311 Rosa chinensis HOM05D003986 ORTHO05D004916 0.0e+00 2171.0 1917 64.7
AUR62014146 Chenopodium quinoa HOM05D003986 ORTHO05D004916 0.0e+00 2147.5 1887 64.2
FAN07G2168 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 2145.5 1909 64.5
FvH4_4g33200 Fragaria vesca HOM05D003986 ORTHO05D004916 0.0e+00 2134.0 1914 64.2
AUR62038486 Chenopodium quinoa HOM05D003986 ORTHO05D004916 0.0e+00 2124.4 1849 64.6
FAN22G0296 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 2120.1 1912 64.0
THA.LOC104807876 Tarenaya hassleriana HOM05D003986 ORTHO05D004916 0.0e+00 2120.1 1886 63.0
SGA_v2.0_scaffold3G01767 Striga asiatica HOM05D003986 ORTHO05D004916 0.0e+00 2117.4 1957 63.1
ATR0021G052 Amborella trichopoda HOM05D003986 ORTHO05D004916 0.0e+00 2113.6 1931 61.9
FAN12G0920 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 2113.6 1918 63.8
FAN17G2354 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 2095.5 1918 63.6
unitig_8.g4016 Utricularia gibba HOM05D003986 ORTHO05D004916 0.0e+00 2090.8 1950 60.4
Oeu006345.3 Olea europaea HOM05D003986 ORTHO05D004916 0.0e+00 2075.1 1921 63.5
Aa31LG7G9380 Aethionema arabicum HOM05D003986 ORTHO05D004916 0.0e+00 2045.4 1889 62.5
Carub.0001s2544 Capsella rubella HOM05D003986 ORTHO05D004916 0.0e+00 2045.4 1849 63.1
Sp1g23110 Schrenkiella parvula HOM05D003986 ORTHO05D004916 0.0e+00 2028.8 1886 62.0
C03p73260 Brassica napus HOM05D003986 ORTHO05D004916 0.0e+00 2020.7 1879 61.7
A08p26750 Brassica napus HOM05D003986 ORTHO05D004916 0.0e+00 2015.4 1879 61.7
Sc14g0006590 Simmondsia chinensis HOM05D003986 ORTHO05D004916 0.0e+00 2013.4 1788 64.0
AT1G24706 Arabidopsis thaliana HOM05D003986 ORTHO05D004916 0.0e+00 2007.3 1885 61.1
AL1G40240 Arabidopsis lyrata HOM05D003986 ORTHO05D004916 0.0e+00 2006.9 1885 61.2
BolC3t19622H Brassica oleracea HOM05D003986 ORTHO05D004916 0.0e+00 2005.3 1879 61.5
Ca_29522_v3 Cicer arietinum L. HOM05D003986 ORTHO05D004916 0.0e+00 2001.5 1791 64.2
CARHR026420 Cardamine hirsuta HOM05D003986 ORTHO05D004916 0.0e+00 1990.7 1873 61.8
THA.LOC104825570 Tarenaya hassleriana HOM05D003986 ORTHO05D004916 0.0e+00 1990.7 1902 61.5
CSS0026713 Camellia sinensis var. sinensis HOM05D003986 ORTHO05D004916 0.0e+00 1987.6 1513 73.1
BraA08t34620Z Brassica rapa HOM05D003986 ORTHO05D004916 0.0e+00 1987.2 1872 61.1
Thhalv10006540m.g Eutrema salsugineum HOM05D003986 ORTHO05D004916 0.0e+00 1984.5 1869 61.9
HPP92_004743 Vanilla planifolia HOM05D003986 ORTHO05D004916 0.0e+00 1963.3 1891 59.2
Lsat_1_v5_gn_3_102381 Lactuca sativa HOM05D003986 ORTHO05D004916 0.0e+00 1948.3 1357 74.6
Lj3C862T8 Lonicera japonica HOM05D003986 ORTHO05D004916 0.0e+00 1907.5 1507 70.4
Zm00001eb156750 Zea mays HOM05D003986 ORTHO05D004916 0.0e+00 1716.8 1848 54.4
Mapoly0001s0369 Marchantia polymorpha HOM05D003986 ORTHO05D004916 0.0e+00 1691.0 1999 52.1
AagrBONN_evm.TU.Sc2ySwM_117.1912 Anthoceros agrestis HOM05D003986 ORTHO05D004916 0.0e+00 1669.4 1975 52.4
Pp3c11_17570 Physcomitrium patens HOM05D003986 ORTHO05D004916 0.0e+00 1559.7 1745 52.8
Os01g0916800 Oryza sativa ssp. japonica HOM05D003986 ORTHO05D004916 0.0e+00 1516.5 1869 50.0
SMO145G0041 Selaginella moellendorffii HOM05D003986 ORTHO05D004916 0.0e+00 1467.2 1872 50.2
Gohir.D02G136832 Gossypium hirsutum HOM05D003986 ORTHO05D004916 0.0e+00 1428.7 913 80.0
Ciclev10014076m.g Citrus clementina HOM05D003986 ORTHO05D004916 0.0e+00 1403.3 1219 67.1
Nitab4.5_0004735g0030 Nicotiana tabacum HOM05D003986 ORTHO05D004916 0.0e+00 1381.3 1253 64.3
Nitab4.5_0000011g0120 Nicotiana tabacum HOM05D003986 ORTHO05D004916 0.0e+00 1367.4 1278 63.9
Hund24923 Selenicereus undatus HOM05D003986 ORTHO05D004916 0.0e+00 1294.3 1084 67.3
SalBow2G1878 Salvia bowleyana HOM05D003986 ORTHO05D004916 0.0e+00 1291.6 1201 62.2
BcaB03g12045 Brassica carinata HOM05D003986 ORTHO05D004916 0.0e+00 1216.1 1424 52.9
CDE05G3646 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 0.0e+00 1182.9 851 71.9
Cpa.g.sc2.153 Carica papaya HOM05D003986 ORTHO05D004916 1.3e-308 1063.9 1101 59.2
SHI04403 Sapria himalayana HOM05D003986 ORTHO05D004916 1.5e-299 1033.9 953 61.7
Ciclev10017843m.g Citrus clementina HOM05D003986 ORTHO05D004916 4.8e-290 1002.3 674 76.1
CDE05G1820 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 8.5e-279 964.9 1131 54.2
CBR_g39719 Chara braunii HOM05D003986 ORTHO05D004916 1.5e-267 927.5 1418 41.5
CAN.G71.2 Capsicum annuum HOM05D003986 ORTHO05D004916 4.3e-262 909.4 675 71.9
Gohir.D02G136766 Gossypium hirsutum HOM05D003986 ORTHO05D004916 4.4e-251 872.8 869 63.8
CDE05G1425 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 9.9e-211 738.8 951 51.6
Cpa.g.sc2.149 Carica papaya HOM05D003986 ORTHO05D004916 8.5e-194 682.6 449 80.0
BcaC05g26698 Brassica carinata HOM05D003986 ORTHO05D004916 1.0e-186 659.1 1087 42.0
Lj3P862T26 Lonicera japonica HOM05D003986 ORTHO05D004916 1.0e-183 649.0 374 86.9
MCO13G375 Micromonas commoda HOM05D003986 ORTHO05D004916 3.0e-183 647.5 1325 34.5
Nitab4.5_0000011g0130 Nicotiana tabacum HOM05D003986 ORTHO05D004916 1.4e-159 568.9 366 79.0
Nitab4.5_0004735g0040 Nicotiana tabacum HOM05D003986 ORTHO05D004916 7.0e-148 530.0 367 74.9
CDE05G1569 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 8.6e-146 523.1 369 72.9
PRCOL_00006124 Prasinoderma coloniale HOM05D003986 ORTHO05D004916 8.1e-128 463.4 1220 30.9
Rhsim04G0125900 Rhododendron simsii HOM05D003986 ORTHO05D004916 8.9e-127 459.9 499 56.1
TAR371G1117 Trochodendron aralioides HOM05D003986 ORTHO05D004916 8.7e-114 416.8 530 54.0
BcaB03g12046 Brassica carinata HOM05D003986 ORTHO05D004916 1.3e-112 412.9 297 69.7
CAN.G71.1 Capsicum annuum HOM05D003986 ORTHO05D004916 4.2e-108 397.9 521 57.8
Nitab4.5_0000011g0140 Nicotiana tabacum HOM05D003986 ORTHO05D004916 2.4e-95 355.5 239 76.2
Rhsim09G0087200 Rhododendron simsii HOM05D003986 ORTHO05D004916 3.9e-90 338.2 198 86.9
Nitab4.5_0004735g0050 Nicotiana tabacum HOM05D003986 ORTHO05D004916 1.9e-89 335.9 262 68.3
AagrBONN_evm.TU.Sc2ySwM_368.2552 Anthoceros agrestis HOM05D003986 ORTHO05D004916 1.1e-81 310.1 194 79.4
COL.COLO4_04150 Corchorus olitorius HOM05D003986 ORTHO05D004916 2.9e-77 295.4 264 62.9
Actinidia23394 Actinidia chinensis HOM05D003986 ORTHO05D004916 1.8e-74 286.2 388 50.0
C05p25490 Brassica napus HOM05D003986 ORTHO05D004916 1.8e-74 286.2 264 59.1
Ca_30366_v3 Cicer arietinum L. HOM05D003986 ORTHO05D004916 1.3e-69 270.0 170 77.6
Cre12.g507700 Chlamydomonas reinhardtii HOM05D003986 ORTHO05D004916 1.5e-65 256.5 927 26.5
Cfa024658 Carpinus fangiana HOM05D003986 ORTHO05D004916 6.3e-64 251.1 1601 24.2
Rhsim04G0143900 Rhododendron simsii HOM05D003986 ORTHO05D004916 8.2e-56 224.2 237 57.0
BolC5t31277H Brassica oleracea HOM05D003986 ORTHO05D004916 2.0e-54 219.5 190 61.6
Hund24924 Selenicereus undatus HOM05D008000 ORTHO05D010275 2.0e-54 219.5 179 60.9
Rhsim04G0143600 Rhododendron simsii HOM05D003986 ORTHO05D004916 3.5e-54 218.8 274 52.9
TAR371G0322 Trochodendron aralioides HOM05D003986 ORTHO05D004916 5.9e-54 218.0 260 51.2
SHI04410 Sapria himalayana HOM05D003986 ORTHO05D004916 2.7e-51 209.1 163 63.8
Rhsim04G0143700 Rhododendron simsii HOM05D003986 ORTHO05D004916 3.6e-51 208.8 223 56.5
Lsat_1_v5_gn_3_86221 Lactuca sativa HOM05D003986 ORTHO05D004916 1.8e-50 206.5 210 59.5
BcaB05g22549 Brassica carinata HOM05D003986 ORTHO05D004916 1.5e-41 176.8 245 47.3
SHI04405 Sapria himalayana HOM05D003986 ORTHO05D004916 2.4e-39 169.5 106 77.4
RcHm_v2.0_Chr2g0110801 Rosa chinensis HOM05D003986 ORTHO05D004916 2.9e-37 162.5 89 84.3
TAR629G2897 Trochodendron aralioides HOM05D003986 ORTHO05D004916 2.5e-36 159.5 126 72.2
Cpa.g.c39725 Carica papaya HOM05D003986 ORTHO05D004916 3.9e-29 135.6 87 73.6
Sabra18G0054000 Salix brachista HOM05D003986 ORTHO05D004916 4.3e-28 132.1 110 67.3
Lalb_Chr18g0049821 Lupinus albus HOM05D003986 ORTHO05D004916 1.2e-27 130.6 75 89.3
MBI18_g21002_MAGBIO Magnolia biondii HOM05D003986 ORTHO05D004916 2.8e-27 129.4 105 70.5
Ciclev10015223m.g Citrus clementina HOM05D000271 ORTHO05D002152 1.0e-26 127.5 82 79.3
CSS0042784 Camellia sinensis var. sinensis HOM05D003986 ORTHO05D004916 4.0e-26 125.6 82 72.0
Lalb_Chr18g0050041 Lupinus albus HOM05D003986 ORTHO05D004916 3.4e-25 122.5 69 89.9
BcaC05g26498 Brassica carinata HOM05D003986 ORTHO05D004916 2.4e-23 116.3 75 78.7
Cpa.g.sc2.147 Carica papaya HOM05D003986 ORTHO05D004916 1.2e-22 114.0 60 93.3
Atru.chr2.736 Acer truncatum HOM05D003986 ORTHO05D004916 2.5e-20 106.3 88 61.4
Cpa.g.sc2.145 Carica papaya HOM05D003986 ORTHO05D004916 2.6e-17 96.3 128 48.4
COL.COLO4_04151 Corchorus olitorius HOM05D003986 ORTHO05D004916 7.5e-17 94.7 73 63.0
Sabra18G0052900 Salix brachista HOM05D003986 ORTHO05D004916 9.8e-17 94.4 58 79.3
Sabra18G0053100 Salix brachista HOM05D003986 ORTHO05D004078 9.8e-17 94.4 58 79.3
Sabra18G0053600 Salix brachista HOM05D003986 ORTHO05D004916 9.8e-17 94.4 58 79.3
Sabra18G0053500 Salix brachista HOM05D003986 ORTHO05D004916 8.3e-16 91.3 58 77.6
Psat0s3352g0200 Pisum sativum HOM05D003986 ORTHO05D020973 1.9e-12 80.1 48 87.5
CsaV3_1G014700 Cucumis sativus L. HOM05D003986 ORTHO05D004916 2.5e-12 79.7 94 47.9
COL.COLO4_22391 Corchorus olitorius HOM05D002579 ORTHO05D002775 1.6e-11 77.0 36 94.4
Psat0s3352g0120 Pisum sativum HOM05D003435 ORTHO05D020973 2.8e-11 76.3 48 70.8
Dinv02645 Davidia involucrata HOM05D003986 ORTHO05D181464 3.6e-11 75.9 42 88.1
VMungo0266G0001 Vigna mungo HOM05D000230 ORTHO05D000176 1.5e-09 70.5 55 61.8
VMungo0465G0002 Vigna mungo HOM05D003986 ORTHO05D004916 1.5e-09 70.5 92 45.7
TAR371G1101 Trochodendron aralioides HOM05D003986 ORTHO05D004916 5.8e-09 68.6 69 52.2
COL.COLO4_22474 Corchorus olitorius HOM05D002548 ORTHO05D003031 1.9e-07 63.5 110 35.5
DCAR_017313 Daucus carota HOM05D000792 ORTHO05D004195 1.2e-06 60.8 167 34.1
Sabra18G0053300 Salix brachista HOM05D003986 ORTHO05D004916 2.7e-06 59.7 59 54.2
Actinidia23393 Actinidia chinensis HOM05D003986 ORTHO05D004916 4.6e-06 58.9 266 29.7


User provided reference genes

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