Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv14329 Davidia involucrata HOM05D001432 ORTHO05D022499 2.2e-85 318.9 164 100.0
Dinv44777 Davidia involucrata HOM05D001432 ORTHO05D002371 1.4e-66 256.5 166 85.5
Actinidia30775 Actinidia chinensis HOM05D001432 ORTHO05D002371 2.2e-64 249.2 165 78.8
TAR628G0761 Trochodendron aralioides HOM05D001432 ORTHO05D002371 1.0e-61 240.4 166 79.5
CSS0033306 Camellia sinensis var. sinensis HOM05D001432 ORTHO05D002371 2.2e-61 239.2 168 79.8
CSS0017979 Camellia sinensis var. sinensis HOM05D001432 ORTHO05D002371 2.7e-59 232.3 166 74.1
TAR376G0873 Trochodendron aralioides HOM05D001432 ORTHO05D002371 5.2e-58 228.0 166 76.5
GSVIVG01009033001 Vitis vinifera HOM05D001432 ORTHO05D002371 2.6e-57 225.7 166 74.7
Atru.chr13.1183 Acer truncatum HOM05D001432 ORTHO05D002371 3.4e-57 225.3 168 73.2
Ciclev10000591m.g Citrus clementina HOM05D001432 ORTHO05D002371 4.4e-57 224.9 166 76.5
Thecc.08G106300 Theobroma cacao HOM05D001432 ORTHO05D002371 1.7e-56 223.0 166 72.3
Duzib093G0459 Durio zibethinus HOM05D001432 ORTHO05D002371 2.2e-56 222.6 165 71.5
Cpa.g.sc36.135 Carica papaya HOM05D001432 ORTHO05D002371 2.8e-56 222.2 172 70.9
Nn5g30092 Nelumbo nucifera HOM05D001432 ORTHO05D002371 4.8e-56 221.5 166 71.1
COL.COLO4_16390 Corchorus olitorius HOM05D001432 ORTHO05D002371 6.3e-56 221.1 166 70.5
Duzib041G0596 Durio zibethinus HOM05D001432 ORTHO05D002371 5.4e-55 218.0 166 69.3
Gorai.009G236700 Gossypium raimondii HOM05D001432 ORTHO05D002371 1.6e-54 216.5 165 69.1
Peaxi162Scf00392g00518 Petunia axillaris HOM05D001432 ORTHO05D002371 1.6e-54 216.5 165 68.5
Gohir.A05G226100 Gossypium hirsutum HOM05D001432 ORTHO05D002371 1.0e-53 213.8 165 68.5
Gohir.D05G228900 Gossypium hirsutum HOM05D001432 ORTHO05D002371 2.9e-53 212.2 166 68.1
CAN.G101.4 Capsicum annuum HOM05D001432 ORTHO05D002371 1.1e-52 210.3 168 67.3
Potri.005G164700 Populus trichocarpa HOM05D001432 ORTHO05D002371 1.1e-52 210.3 166 69.3
Solyc04g074180.4 Solanum lycopersicum HOM05D001432 ORTHO05D002371 1.5e-52 209.9 167 68.9
Oeu053220.1 Olea europaea HOM05D001432 ORTHO05D002371 1.9e-52 209.5 167 70.7
QL12p036839 Quercus lobata HOM05D001432 ORTHO05D002371 3.3e-52 208.8 165 73.3
Nitab4.5_0007455g0010 Nicotiana tabacum HOM05D001432 ORTHO05D002371 4.2e-52 208.4 168 66.1
Potri.002G096900 Populus trichocarpa HOM05D001432 ORTHO05D002371 5.5e-52 208.0 166 66.3
Eucgr.F00326 Eucalyptus grandis HOM05D001432 ORTHO05D002371 7.2e-52 207.6 166 65.7
Prupe.1G517600 Prunus persica HOM05D001432 ORTHO05D002371 9.5e-52 207.2 166 71.7
Sopen04g029360 Solanum pennellii HOM05D001432 ORTHO05D002371 1.6e-51 206.5 167 68.3
Sabra05G0124200 Salix brachista HOM05D001432 ORTHO05D002371 3.6e-51 205.3 164 67.1
TWI12G0842 Tripterygium wilfordii HOM05D001432 ORTHO05D002371 1.4e-50 203.4 165 70.3
Sabra02G0076200 Salix brachista HOM05D001432 ORTHO05D002371 2.3e-50 202.6 165 64.2
Oeu002709.1 Olea europaea HOM05D001432 ORTHO05D002371 5.2e-50 201.4 167 69.5
MD15G1369900 Malus domestica HOM05D001432 ORTHO05D002371 8.9e-50 200.7 166 69.3
vmacro04744 Vaccinium macrocarpon HOM05D001432 ORTHO05D002371 2.0e-49 199.5 164 67.7
MD00G1201600 Malus domestica HOM05D001432 ORTHO05D002371 2.6e-49 199.1 166 69.3
vmacro21266 Vaccinium macrocarpon HOM05D001432 ORTHO05D002371 9.8e-49 197.2 164 66.5
TWI36G0879 Tripterygium wilfordii HOM05D001432 ORTHO05D002371 8.3e-48 194.1 165 67.9
Manes.02G152400 Manihot esculenta HOM05D001432 ORTHO05D002371 1.1e-47 193.7 164 67.7
Manes.18G067300 Manihot esculenta HOM05D001432 ORTHO05D002371 1.8e-47 193.0 165 64.2
Aqoxy5G01902 Aquilegia oxysepala HOM05D001432 ORTHO05D002371 4.1e-47 191.8 164 67.1
Cfa013639 Carpinus fangiana HOM05D001432 ORTHO05D002371 9.2e-47 190.7 168 67.9
Rhsim07G0202900 Rhododendron simsii HOM05D001432 ORTHO05D002371 9.2e-47 190.7 164 65.2
CiPaw.07G179600 Carya illinoinensis HOM05D001432 ORTHO05D002371 5.9e-46 188.0 164 64.0
CiPaw.08G045400 Carya illinoinensis HOM05D001432 ORTHO05D002371 5.9e-46 188.0 167 68.3
Cc10_g07160 Coffea canephora HOM05D001432 ORTHO05D002371 1.0e-45 187.2 168 62.5
Haze_22273 Corylus avellana HOM05D001432 ORTHO05D002371 1.7e-45 186.4 156 69.2
Gohir.D05G268400 Gossypium hirsutum HOM05D001432 ORTHO05D002371 1.7e-45 186.4 166 64.5
arahy.Tifrunner.gnm1.ann1.FSP2M7 Arachis hypogaea HOM05D001432 ORTHO05D002371 2.9e-45 185.7 167 66.5
Gohir.A05G266800 Gossypium hirsutum HOM05D001432 ORTHO05D002371 2.9e-45 185.7 166 64.5
Lj1g0010282 Lotus japonicus HOM05D001432 ORTHO05D002371 2.9e-45 185.7 164 66.5
Gorai.009G280900 Gossypium raimondii HOM05D001432 ORTHO05D002371 3.8e-45 185.3 166 63.9
MBI05_g39036_MAGBIO Magnolia biondii HOM05D001432 ORTHO05D002371 1.9e-44 183.0 166 64.5
CANSAT25G3454 Cannabis sativa HOM05D001432 ORTHO05D002371 2.5e-44 182.6 167 64.7
arahy.Tifrunner.gnm1.ann1.VS4P4P Arachis hypogaea HOM05D001432 ORTHO05D002371 3.3e-44 182.2 167 65.9
PGR042G3104 Punica granatum HOM05D001432 ORTHO05D002371 5.6e-44 181.4 161 64.6
Sed0005567 Sechium edule HOM05D001432 ORTHO05D002371 3.6e-43 178.7 163 65.0
FAN08G1600 Fragaria x ananassa HOM05D001432 ORTHO05D002371 1.4e-42 176.8 166 65.7
Lj4A724T54 Lonicera japonica HOM05D001432 ORTHO05D002371 6.8e-42 174.5 168 64.9
MSTRG.24456 Avicennia marina HOM05D001432 ORTHO05D002371 2.0e-41 172.9 166 59.0
FAN04G1139 Fragaria x ananassa HOM05D001432 ORTHO05D002371 2.0e-41 172.9 167 66.5
PSO447G0016 Papaver somniferum HOM05D001432 ORTHO05D002371 2.0e-41 172.9 171 60.8
ClCG11G014090 Citrullus lanatus HOM05D001432 ORTHO05D002371 2.6e-41 172.6 162 61.7
Lj1g0025181 Lotus japonicus HOM05D001432 ORTHO05D002371 2.6e-41 172.6 167 61.1
PSO210G4129 Papaver somniferum HOM05D001432 ORTHO05D002371 2.6e-41 172.6 170 60.6
FvH4_5g37290 Fragaria vesca HOM05D001432 ORTHO05D002371 3.4e-41 172.2 167 65.9
FAN18G1941 Fragaria x ananassa HOM05D001432 ORTHO05D002371 3.4e-41 172.2 167 65.9
Glyma.06G103200 Glycine max HOM05D001432 ORTHO05D002371 3.4e-41 172.2 166 60.8
FAN13G0847 Fragaria x ananassa HOM05D001432 ORTHO05D002371 4.4e-41 171.8 167 65.9
Lj4A102T61 Lonicera japonica HOM05D001432 ORTHO05D002371 7.5e-41 171.0 169 62.7
MELO3C003575.2 Cucumis melo HOM05D001432 ORTHO05D002371 9.8e-41 170.6 162 61.1
DCAR_008737 Daucus carota HOM05D001432 ORTHO05D002371 1.3e-40 170.2 166 63.9
Glyma.04G101500 Glycine max HOM05D001432 ORTHO05D002371 1.3e-40 170.2 167 60.5
RcHm_v2.0_Chr7g0238851 Rosa chinensis HOM05D001432 ORTHO05D002371 3.7e-40 168.7 167 65.3
Lalb_Chr04g0253141 Lupinus albus HOM05D001432 ORTHO05D002371 4.9e-40 168.3 168 62.5
Hund16903 Selenicereus undatus HOM05D001432 ORTHO05D002371 4.9e-40 168.3 170 58.2
Glyma.14G174200 Glycine max HOM05D001432 ORTHO05D002371 2.4e-39 166.0 169 64.5
SalBow2G2310 Salvia bowleyana HOM05D001432 ORTHO05D002371 7.0e-39 164.5 157 59.9
VMungo0647G1228 Vigna mungo HOM05D001432 ORTHO05D002371 9.2e-39 164.1 160 62.5
Glyma.13G089200 Glycine max HOM05D001432 ORTHO05D002371 1.2e-38 163.7 168 62.5
SalBow2G1871 Salvia bowleyana HOM05D001432 ORTHO05D002371 1.6e-38 163.3 157 59.2
Lalb_Chr10g0102401 Lupinus albus HOM05D001432 ORTHO05D002371 2.0e-38 162.9 169 60.4
Ca_05277_v3 Cicer arietinum L. HOM05D001432 ORTHO05D002371 2.7e-38 162.5 171 62.0
Phvul.008G173700 Phaseolus vulgaris HOM05D001432 ORTHO05D002371 2.7e-38 162.5 161 64.0
Sc01g0000470 Simmondsia chinensis HOM05D001432 ORTHO05D002371 6.0e-38 161.4 172 54.7
VMungo1309G2627 Vigna mungo HOM05D001432 ORTHO05D002371 1.0e-37 160.6 166 61.4
Medtr5g063920 Medicago truncatula HOM05D001432 ORTHO05D002371 1.3e-37 160.2 168 60.7
MSTRG.22155 Avicennia marina HOM05D001432 ORTHO05D002371 6.6e-37 157.9 131 67.9
Lalb_Chr11g0065411 Lupinus albus HOM05D001432 ORTHO05D002371 2.5e-36 156.0 168 58.3
ECA232G0963 Erigeron canadensis HOM05D001432 ORTHO05D002371 1.2e-35 153.7 169 60.4
HanXRQChr05g0145441 Helianthus annuus HOM05D001432 ORTHO05D002371 4.0e-34 148.7 170 58.8
EL10Ac1g01211 Beta vulgaris HOM05D001432 ORTHO05D002371 1.2e-33 147.1 172 54.7
Aqoxy6G00777 Aquilegia oxysepala HOM05D001432 ORTHO05D002371 7.5e-33 144.4 160 55.6
Ah.05g179350 Amaranthus hybridus HOM05D001432 ORTHO05D002371 1.3e-32 143.7 170 50.6
ATR0782G069 Amborella trichopoda HOM05D001432 ORTHO05D002371 5.4e-31 138.3 168 52.4
AUR62018922 Chenopodium quinoa HOM05D001432 ORTHO05D002371 9.2e-31 137.5 175 51.4
AUR62027766 Chenopodium quinoa HOM05D001432 ORTHO05D002371 2.1e-30 136.3 175 52.0
TPR.G14903 Trifolium pratense HOM05D001432 ORTHO05D002371 2.1e-30 136.3 167 52.7
THA.LOC104813117 Tarenaya hassleriana HOM05D001432 ORTHO05D002371 7.8e-30 134.4 166 56.6
THA.LOC104816737 Tarenaya hassleriana HOM05D001432 ORTHO05D002371 1.3e-29 133.7 167 55.1
BcaC04g20930 Brassica carinata HOM05D001432 ORTHO05D002371 3.0e-29 132.5 163 55.8
Psat2g072040 Pisum sativum HOM05D001432 ORTHO05D002371 3.0e-29 132.5 168 50.0
C09p37790 Brassica napus HOM05D001432 ORTHO05D002371 3.9e-29 132.1 162 55.6
BolC9t56612H Brassica oleracea HOM05D001432 ORTHO05D002371 3.9e-29 132.1 162 55.6
Migut.N02894 Erythranthe guttata HOM05D001432 ORTHO05D002371 5.0e-29 131.7 171 49.7
Sp6g08810 Schrenkiella parvula HOM05D001432 ORTHO05D002371 1.9e-28 129.8 166 54.2
A09p29920 Brassica napus HOM05D001432 ORTHO05D002371 2.5e-28 129.4 162 54.9
BraA09t38553Z Brassica rapa HOM05D001432 ORTHO05D002371 2.5e-28 129.4 162 54.9
Carub.0006s2751 Capsella rubella HOM05D001432 ORTHO05D002371 3.3e-28 129.0 165 54.5
Oeu057377.2 Olea europaea HOM05D001432 ORTHO05D002371 4.3e-28 128.6 124 59.7
AT4G08920 Arabidopsis thaliana HOM05D001432 ORTHO05D002371 9.5e-28 127.5 163 55.2
HanXRQChr04g0113061 Helianthus annuus HOM05D001432 ORTHO05D002371 9.5e-28 127.5 169 50.9
CARHR259940 Cardamine hirsuta HOM05D001432 ORTHO05D002371 1.6e-27 126.7 170 53.5
AL6G41630 Arabidopsis lyrata HOM05D001432 ORTHO05D002371 4.7e-27 125.2 162 54.3
BcaB01g01365 Brassica carinata HOM05D001432 ORTHO05D002371 1.1e-26 124.0 162 52.5
Aa31LG9G14620 Aethionema arabicum HOM05D001432 ORTHO05D002371 3.1e-26 122.5 174 50.6
Nn1g05366 Nelumbo nucifera HOM05D001432 ORTHO05D002371 2.0e-25 119.8 146 49.3
HPP92_011227 Vanilla planifolia HOM05D001432 ORTHO05D002371 2.6e-25 119.4 161 49.7
Lsat_1_v5_gn_6_103780 Lactuca sativa HOM05D001432 ORTHO05D022499 3.4e-25 119.0 167 50.9
unitig_22.g5823 Utricularia gibba HOM05D001432 ORTHO05D002371 7.5e-25 117.9 165 51.5
HPP92_011221 Vanilla planifolia HOM05D001432 ORTHO05D002371 1.3e-24 117.1 157 49.7
Phvul.009G031300 Phaseolus vulgaris HOM05D001432 ORTHO05D002371 2.2e-24 116.3 139 51.8
TAR381G1263 Trochodendron aralioides HOM05D001432 ORTHO05D002371 6.4e-24 114.8 94 66.0
Lsat_1_v5_gn_1_3881 Lactuca sativa HOM05D001432 ORTHO05D002371 2.3e-21 106.3 136 53.7
Os04g0452100 Oryza sativa ssp. japonica HOM05D001432 ORTHO05D002371 1.5e-20 103.6 168 44.0
Lsat_1_v5_gn_7_67581 Lactuca sativa HOM05D001432 ORTHO05D022499 3.6e-19 99.0 151 49.0
Zm00001eb244770 Zea mays HOM05D001432 ORTHO05D002371 2.6e-17 92.8 169 40.8
Lsat_1_v5_gn_9_41700 Lactuca sativa HOM05D001432 ORTHO05D002371 1.9e-15 86.7 174 39.1
CDE03G0064 Ceratophyllum demersum HOM05D001432 ORTHO05D002371 7.1e-15 84.7 123 47.2
Zm00001eb182820 Zea mays HOM05D001432 ORTHO05D002371 1.2e-14 84.0 172 38.4
Lsat_1_v5_gn_8_23241 Lactuca sativa HOM05D001432 ORTHO05D022499 4.6e-14 82.0 139 43.2
CsaV3_3G047490 Cucumis sativus L. HOM05D001432 ORTHO05D002371 2.3e-13 79.7 82 54.9
Lsat_1_v5_gn_2_57160 Lactuca sativa HOM05D003492 ORTHO05D022499 2.3e-13 79.7 152 43.4
Os02g0573200 Oryza sativa ssp. japonica HOM05D001432 ORTHO05D002371 2.3e-13 79.7 177 37.9
Zm00001eb081200 Zea mays HOM05D001432 ORTHO05D002371 4.3e-12 75.5 181 37.0
CDE05G2828 Ceratophyllum demersum HOM05D001432 ORTHO05D002371 6.2e-11 71.6 172 36.0
Lsat_1_v5_gn_4_21701 Lactuca sativa HOM05D001432 ORTHO05D022499 5.8e-09 65.1 103 45.6
THA.LOC104810791 Tarenaya hassleriana HOM05D001432 ORTHO05D002371 5.8e-09 65.1 164 35.4
CDE06G0611 Ceratophyllum demersum HOM05D001432 ORTHO05D002371 7.1e-07 58.2 64 50.0
Nitab4.5_0003380g0010 Nicotiana tabacum HOM05D001432 ORTHO05D002371 6.0e-06 55.1 64 51.6
PGSC0003DMG400008545 Solanum tuberosum HOM05D001432 ORTHO05D002371 6.0e-06 55.1 59 54.2


User provided reference genes

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