Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv14234 Davidia involucrata HOM05D004668 ORTHO05D006460 2.7e-183 645.2 324 100.0
CSS0043453 Camellia sinensis var. sinensis HOM05D004668 ORTHO05D006460 1.3e-145 520.0 276 94.9
QL12p029595 Quercus lobata HOM05D004668 ORTHO05D006460 2.9e-145 518.8 275 94.5
Cpa.g.sc78.74 Carica papaya HOM05D004668 ORTHO05D006460 6.5e-145 517.7 275 94.2
Manes.16G069151 Manihot esculenta HOM05D004668 ORTHO05D006460 8.4e-145 517.3 275 93.8
Rhsim07G0153100 Rhododendron simsii HOM05D004668 ORTHO05D006460 8.4e-145 517.3 275 94.2
CSS0016357 Camellia sinensis var. sinensis HOM05D004668 ORTHO05D006460 1.1e-144 516.9 275 94.5
Cfa013349 Carpinus fangiana HOM05D004668 ORTHO05D006460 1.9e-144 516.2 275 93.8
Thecc.09G041000 Theobroma cacao HOM05D004668 ORTHO05D006460 1.9e-144 516.2 275 94.2
CiPaw.07G206300 Carya illinoinensis HOM05D004668 ORTHO05D006460 5.5e-144 514.6 275 93.5
Dinv30261 Davidia involucrata HOM05D004668 ORTHO05D006460 5.5e-144 514.6 275 94.2
Cc08_g09100 Coffea canephora HOM05D004668 ORTHO05D006460 1.2e-143 513.5 275 92.7
Hma1.2p1_0140F.1_g063460 Hydrangea macrophylla HOM05D004668 ORTHO05D006460 2.7e-143 512.3 275 93.1
Potri.006G241300 Populus trichocarpa HOM05D004668 ORTHO05D006460 2.7e-143 512.3 275 93.1
Atru.chr7.2149 Acer truncatum HOM05D004668 ORTHO05D006460 3.5e-143 511.9 275 92.7
Duzib150G0487 Durio zibethinus HOM05D004668 ORTHO05D006460 7.9e-143 510.8 275 93.5
COL.COLO4_18686 Corchorus olitorius HOM05D004668 ORTHO05D006460 1.0e-142 510.4 275 93.5
Eucgr.C02897 Eucalyptus grandis HOM05D004668 ORTHO05D006460 1.0e-142 510.4 276 91.3
Gohir.A06G095600 Gossypium hirsutum HOM05D004668 ORTHO05D006460 1.3e-142 510.0 275 93.1
Gohir.A05G047900 Gossypium hirsutum HOM05D004668 ORTHO05D006460 3.0e-142 508.8 275 92.7
Gorai.010G110200 Gossypium raimondii HOM05D004668 ORTHO05D006460 3.0e-142 508.8 275 93.1
Nn3g18078 Nelumbo nucifera HOM05D004668 ORTHO05D006460 6.7e-142 507.7 275 92.4
TAR383G0581 Trochodendron aralioides HOM05D004668 ORTHO05D006460 8.7e-142 507.3 275 92.0
Nitab4.5_0009807g0010 Nicotiana tabacum HOM05D004668 ORTHO05D006460 1.1e-141 506.9 275 92.7
Sc24g0002000 Simmondsia chinensis HOM05D004668 ORTHO05D006460 1.1e-141 506.9 275 91.3
Sabra06G0188700 Salix brachista HOM05D004668 ORTHO05D006460 1.5e-141 506.5 275 92.4
Gorai.009G051100 Gossypium raimondii HOM05D004668 ORTHO05D006460 1.9e-141 506.1 275 92.0
Phvul.009G106900 Phaseolus vulgaris HOM05D004668 ORTHO05D006460 1.9e-141 506.1 275 92.4
TAR626G0558 Trochodendron aralioides HOM05D004668 ORTHO05D006460 1.9e-141 506.1 275 92.0
GSVIVG01035660001 Vitis vinifera HOM05D004668 ORTHO05D006460 2.5e-141 505.8 275 92.0
arahy.Tifrunner.gnm1.ann1.1GG9S8 Arachis hypogaea HOM05D004668 ORTHO05D006460 3.3e-141 505.4 275 91.6
arahy.Tifrunner.gnm1.ann1.ID3432 Arachis hypogaea HOM05D004668 ORTHO05D006460 3.3e-141 505.4 275 91.6
VMungo1309G0977 Vigna mungo HOM05D004668 ORTHO05D006460 3.3e-141 505.4 275 91.6
AUR62009316 Chenopodium quinoa HOM05D004668 ORTHO05D006460 4.3e-141 505.0 275 90.5
AUR62029669 Chenopodium quinoa HOM05D004668 ORTHO05D006460 4.3e-141 505.0 275 90.5
AUR62043617 Chenopodium quinoa HOM05D004668 ORTHO05D006460 4.3e-141 505.0 275 90.5
Prupe.1G451600 Prunus persica HOM05D004668 ORTHO05D006460 5.7e-141 504.6 275 91.6
Gohir.D06G095700 Gossypium hirsutum HOM05D004668 ORTHO05D006460 7.4e-141 504.2 275 92.4
Lalb_Chr11g0064411 Lupinus albus HOM05D004668 ORTHO05D006460 7.4e-141 504.2 275 90.9
Hund03417 Selenicereus undatus HOM05D004668 ORTHO05D006460 9.7e-141 503.8 275 90.5
ClCG11G015260 Citrullus lanatus HOM05D004668 ORTHO05D006460 1.3e-140 503.4 275 91.3
Actinidia13314 Actinidia chinensis HOM05D004668 ORTHO05D006460 1.6e-140 503.1 275 92.7
EL10Ac2g04059 Beta vulgaris HOM05D004668 ORTHO05D006460 1.6e-140 503.1 275 90.5
Gohir.D05G049800 Gossypium hirsutum HOM05D004668 ORTHO05D006460 1.6e-140 503.1 275 91.6
DCAR_007707 Daucus carota HOM05D004668 ORTHO05D006460 2.2e-140 502.7 275 91.3
Glyma.04G080800 Glycine max HOM05D004668 ORTHO05D006460 2.2e-140 502.7 275 91.6
MSTRG.1654 Avicennia marina HOM05D004668 ORTHO05D006460 4.8e-140 501.5 275 90.5
Lj8A596T25 Lonicera japonica HOM05D004668 ORTHO05D006460 4.8e-140 501.5 275 92.0
MELO3C003453.2 Cucumis melo HOM05D004668 ORTHO05D006460 6.3e-140 501.1 275 90.9
Lj1g0002470 Lotus japonicus HOM05D004668 ORTHO05D006460 6.3e-140 501.1 275 90.9
Glyma.06G082500 Glycine max HOM05D004668 ORTHO05D006460 8.2e-140 500.7 275 91.3
Ciclev10007989m.g Citrus clementina HOM05D004668 ORTHO05D006460 1.1e-139 500.4 275 90.9
Actinidia31228 Actinidia chinensis HOM05D004668 ORTHO05D006460 1.4e-139 500.0 275 91.6
CsaV3_3G048680 Cucumis sativus L. HOM05D004668 ORTHO05D006460 1.8e-139 499.6 275 90.5
Lalb_Chr08g0243231 Lupinus albus HOM05D004668 ORTHO05D006460 2.4e-139 499.2 275 90.2
Nn2g11692 Nelumbo nucifera HOM05D004668 ORTHO05D006460 5.3e-139 498.0 275 89.8
SalBow8G2719 Salvia bowleyana HOM05D004668 ORTHO05D006460 5.3e-139 498.0 275 89.5
Migut.A00230 Erythranthe guttata HOM05D004668 ORTHO05D006460 6.9e-139 497.7 275 89.8
MD15G1096700 Malus domestica HOM05D004668 ORTHO05D006460 6.9e-139 497.7 275 90.2
Haze_21865 Corylus avellana HOM05D004668 ORTHO05D006460 9.0e-139 497.3 314 82.5
CANSAT25G3625 Cannabis sativa HOM05D004668 ORTHO05D006460 1.2e-138 496.9 275 90.5
Lsat_1_v5_gn_5_33301 Lactuca sativa HOM05D004668 ORTHO05D006460 1.5e-138 496.5 276 91.3
Sed0007190 Sechium edule HOM05D004668 ORTHO05D006460 1.5e-138 496.5 275 89.8
MD08G1117100 Malus domestica HOM05D004668 ORTHO05D006460 2.0e-138 496.1 275 89.8
FvH4_2g36000 Fragaria vesca HOM05D004668 ORTHO05D006460 3.4e-138 495.4 276 89.5
FAN27G2976 Fragaria x ananassa HOM05D004668 ORTHO05D006460 3.4e-138 495.4 276 89.5
PGR044G2637 Punica granatum HOM05D004668 ORTHO05D006460 4.5e-138 495.0 275 90.5
Sabra18G0038900 Salix brachista HOM05D004668 ORTHO05D006460 4.5e-138 495.0 274 89.8
Potri.018G038500 Populus trichocarpa HOM05D004668 ORTHO05D006460 1.3e-137 493.4 274 89.8
Sed0009143 Sechium edule HOM05D004668 ORTHO05D006460 1.3e-137 493.4 275 88.4
Ca_15614_v3 Cicer arietinum L. HOM05D004668 ORTHO05D006460 1.7e-137 493.0 275 90.5
RcHm_v2.0_Chr6g0305871 Rosa chinensis HOM05D004668 ORTHO05D006460 1.7e-137 493.0 277 89.9
HanXRQChr08g0236271 Helianthus annuus HOM05D004668 ORTHO05D006460 2.9e-137 492.3 276 90.2
FAN20G1164 Fragaria x ananassa HOM05D004668 ORTHO05D006460 3.8e-137 491.9 276 89.1
FAN15G0799 Fragaria x ananassa HOM05D004668 ORTHO05D006460 8.5e-137 490.7 276 88.8
Aa31LG11G4750 Aethionema arabicum HOM05D004668 ORTHO05D006460 1.4e-136 490.0 275 87.6
PGSC0003DMG400010841 Solanum tuberosum HOM05D004668 ORTHO05D006460 1.4e-136 490.0 275 88.7
Peaxi162Scf00523g00013 Petunia axillaris HOM05D004668 ORTHO05D006460 2.5e-136 489.2 309 82.8
Solyc08g068340.3 Solanum lycopersicum HOM05D004668 ORTHO05D006460 2.5e-136 489.2 275 88.7
Sopen08g022190 Solanum pennellii HOM05D004668 ORTHO05D006460 2.5e-136 489.2 275 88.7
MBI01_g15706_MAGBIO Magnolia biondii HOM05D004668 ORTHO05D006460 3.2e-136 488.8 275 87.3
Medtr3g110068 Medicago truncatula HOM05D004668 ORTHO05D006460 4.2e-136 488.4 275 89.5
BcaNung04843 Brassica carinata HOM05D004668 ORTHO05D006460 5.5e-136 488.0 275 87.6
Duzib187G0091 Durio zibethinus HOM05D004668 ORTHO05D006460 7.2e-136 487.6 329 77.8
Thhalv10003996m.g Eutrema salsugineum HOM05D004668 ORTHO05D006460 1.6e-135 486.5 275 87.6
Psat5g022480 Pisum sativum HOM05D004668 ORTHO05D006460 2.1e-135 486.1 275 88.0
TWI63G0192 Tripterygium wilfordii HOM05D004668 ORTHO05D006460 2.1e-135 486.1 275 89.1
Aqoxy7G01598 Aquilegia oxysepala HOM05D004668 ORTHO05D006460 3.6e-135 485.3 276 88.4
Carub.0006s2352 Capsella rubella HOM05D004668 ORTHO05D006460 4.6e-135 485.0 275 86.5
Thhalv10004012m.g Eutrema salsugineum HOM05D004668 ORTHO05D006460 4.6e-135 485.0 275 87.3
Sp2g21880 Schrenkiella parvula HOM05D004668 ORTHO05D006460 6.1e-135 484.6 275 86.9
Lalb_Chr23g0269511 Lupinus albus HOM05D004668 ORTHO05D006460 7.9e-135 484.2 275 87.3
THA.LOC104799201 Tarenaya hassleriana HOM05D004668 ORTHO05D006460 1.0e-134 483.8 276 87.7
A06p36360 Brassica napus HOM05D004668 ORTHO05D006460 5.1e-134 481.5 275 86.2
BraA06t26560Z Brassica rapa HOM05D004668 ORTHO05D006460 5.1e-134 481.5 275 86.2
BolC7t44746H Brassica oleracea HOM05D004668 ORTHO05D006460 1.1e-133 480.3 275 86.2
ECA246G0301 Erigeron canadensis HOM05D004668 ORTHO05D006460 1.1e-133 480.3 276 87.3
SGA_v2.0_scaffold169G38650 Striga asiatica HOM05D004668 ORTHO05D006460 1.1e-133 480.3 286 85.0
ATR0315G076 Amborella trichopoda HOM05D004668 ORTHO05D006460 1.5e-133 479.9 275 83.6
BcaB04g19770 Brassica carinata HOM05D004668 ORTHO05D006460 1.5e-133 479.9 275 86.5
BcaNung03928 Brassica carinata HOM05D004668 ORTHO05D006460 7.4e-133 477.6 275 85.8
C07p42150 Brassica napus HOM05D004668 ORTHO05D006460 7.4e-133 477.6 275 85.8
PSO782G3981 Papaver somniferum HOM05D004668 ORTHO05D006460 1.3e-132 476.9 276 87.3
TPR.G1330 Trifolium pratense HOM05D004668 ORTHO05D006460 1.7e-132 476.5 275 86.5
Sp2g21870 Schrenkiella parvula HOM05D004668 ORTHO05D006460 2.2e-132 476.1 275 86.2
PSO566G0146 Papaver somniferum HOM05D004668 ORTHO05D006460 3.7e-132 475.3 276 86.6
TWI23G1109 Tripterygium wilfordii HOM05D004668 ORTHO05D006460 3.7e-132 475.3 275 87.3
CDE02G2035 Ceratophyllum demersum HOM05D004668 ORTHO05D006460 6.3e-132 474.6 274 85.0
Carub.0006s2353 Capsella rubella HOM05D004668 ORTHO05D006460 1.4e-131 473.4 275 84.4
CARHR289290 Cardamine hirsuta HOM05D004668 ORTHO05D006460 2.4e-131 472.6 274 85.4
CDE04G3150 Ceratophyllum demersum HOM05D004668 ORTHO05D006460 6.9e-131 471.1 275 83.6
AL3G41810 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 7.7e-130 467.6 275 83.6
AL6G37550 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 6.5e-129 464.5 275 82.9
AT5G25754 Arabidopsis thaliana HOM05D004668 ORTHO05D006460 3.2e-128 462.2 276 83.7
AT5G25757 Arabidopsis thaliana HOM05D004668 ORTHO05D006460 3.2e-128 462.2 276 83.7
HPP92_023911 Vanilla planifolia HOM05D004668 ORTHO05D006460 7.9e-127 457.6 275 81.1
Zm00001eb119330 Zea mays HOM05D004668 ORTHO05D006460 1.3e-124 450.3 275 79.3
Zm00001eb339230 Zea mays HOM05D004668 ORTHO05D006460 1.3e-124 450.3 275 79.3
Os05g0227700 Oryza sativa ssp. japonica HOM05D004668 ORTHO05D006460 1.1e-123 447.2 275 78.5
SHI18650 Sapria himalayana HOM05D004668 ORTHO05D006460 1.2e-122 443.7 274 81.4
SGA_v2.0_scaffold163G38083 Striga asiatica HOM05D004668 ORTHO05D006460 2.6e-122 442.6 249 88.8
unitig_748.g7800 Utricularia gibba HOM05D004668 ORTHO05D006460 2.6e-122 442.6 249 87.6
Os01g0229100 Oryza sativa ssp. japonica HOM05D004668 ORTHO05D006460 1.7e-121 439.9 275 76.4
HPP92_023943 Vanilla planifolia HOM05D004668 ORTHO05D006460 1.6e-119 433.3 275 78.2
BcaC03g17894 Brassica carinata HOM05D004668 ORTHO05D006460 3.0e-118 429.1 285 76.8
Pp3s48_70 Physcomitrium patens HOM05D004668 ORTHO05D006460 8.5e-113 411.0 275 72.0
Pp3c21_22430 Physcomitrium patens HOM05D004668 ORTHO05D006460 4.7e-111 405.2 275 70.9
Mapoly0007s0280 Marchantia polymorpha HOM05D004668 ORTHO05D006460 8.0e-111 404.4 275 69.8
Mapoly0008s0020 Marchantia polymorpha HOM05D004668 ORTHO05D006460 1.0e-110 404.1 275 70.2
CBR_g38842 Chara braunii HOM05D004668 ORTHO05D006460 8.3e-108 394.4 275 70.2
SEGI_23309 Sequoiadendron giganteum HOM05D004668 ORTHO05D006460 4.1e-107 392.1 263 74.1
AagrBONN_evm.TU.Sc2ySwM_344.1641 Anthoceros agrestis HOM05D004668 ORTHO05D006460 2.1e-103 379.8 275 68.0
C02p59370 Brassica napus HOM05D004668 ORTHO05D006460 3.5e-90 335.9 228 76.3
SMO118G0091 Selaginella moellendorffii HOM05D004668 ORTHO05D006460 6.6e-89 331.6 286 58.4
AL6G38760 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 1.7e-81 307.0 218 73.4
PRCOL_00004532 Prasinoderma coloniale HOM05D004668 ORTHO05D006460 3.4e-61 239.6 278 44.6
MCO02G037 Micromonas commoda HOM05D004668 ORTHO05D006460 2.6e-53 213.4 315 43.5
Cre17.g697450 Chlamydomonas reinhardtii HOM05D004668 ORTHO05D006460 9.9e-53 211.5 291 43.6
Cfa026236 Carpinus fangiana HOM05D004668 ORTHO05D123177 2.7e-50 203.4 279 38.0
BolC2t12000H Brassica oleracea HOM05D004668 ORTHO05D006460 1.5e-40 171.0 93 86.0
HanXRQChr06g0165701 Helianthus annuus HOM05D004668 ORTHO05D220881 1.9e-35 154.1 164 54.9
HanXRQChr06g0165631 Helianthus annuus HOM05D004668 ORTHO05D220789 2.1e-34 150.6 164 53.0
Oeu012190.1 Olea europaea HOM05D004668 ORTHO05D006460 1.8e-33 147.5 275 37.5
Nitab4.5_0000052g0210 Nicotiana tabacum HOM05D004668 ORTHO05D044669 2.1e-26 124.0 66 90.9
CAN.G21.33 Capsicum annuum HOM05D004668 ORTHO05D006460 4.8e-23 112.8 56 92.9
vmacro05363 Vaccinium macrocarpon HOM05D004668 ORTHO05D006460 6.3e-23 112.5 57 89.5
Cc08_g09150 Coffea canephora HOM05D004668 ORTHO05D044669 2.9e-20 103.6 55 87.3
SGA_v2.0_scaffold47G17509 Striga asiatica HOM05D004668 ORTHO05D405290 1.8e-14 84.3 72 62.5
Medtr3g109300 Medicago truncatula HOM05D000944 ORTHO05D003581 2.0e-13 80.9 125 43.2


User provided reference genes

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