Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv13913 Davidia involucrata HOM05D004784 ORTHO05D005762 3.6e-241 837.8 409 100.0
Dinv20065 Davidia involucrata HOM05D004784 ORTHO05D005762 1.0e-232 809.7 409 96.1
Hma1.2p1_0091F.1_g046500 Hydrangea macrophylla HOM05D004784 ORTHO05D005762 3.2e-226 788.1 409 92.9
CiPaw.09G093700 Carya illinoinensis HOM05D004784 ORTHO05D005762 2.7e-225 785.0 409 92.9
CiPaw.10G073000 Carya illinoinensis HOM05D004784 ORTHO05D005762 4.7e-225 784.3 409 93.2
Hma1.2p1_0298F.1_g117720 Hydrangea macrophylla HOM05D004784 ORTHO05D005762 6.1e-225 783.9 408 93.6
TWI38G1114 Tripterygium wilfordii HOM05D004784 ORTHO05D005762 2.2e-222 775.4 409 91.9
TWI63G0560 Tripterygium wilfordii HOM05D004784 ORTHO05D005762 2.8e-222 775.0 409 91.9
Oeu002744.1 Olea europaea HOM05D004784 ORTHO05D005762 4.8e-222 774.2 409 90.7
QL02p099920 Quercus lobata HOM05D004784 ORTHO05D005762 6.3e-222 773.9 406 92.1
SalBow8G0639 Salvia bowleyana HOM05D004784 ORTHO05D005762 6.3e-222 773.9 409 90.7
Prupe.4G018500 Prunus persica HOM05D004784 ORTHO05D005762 8.2e-222 773.5 409 91.9
QL05p072692 Quercus lobata HOM05D004784 ORTHO05D005762 1.1e-221 773.1 405 92.1
Lj1A1232G87 Lonicera japonica HOM05D004784 ORTHO05D005762 1.8e-221 772.3 406 91.6
Cfa000202 Carpinus fangiana HOM05D004784 ORTHO05D005762 2.4e-221 771.9 409 91.2
Oeu013835.1 Olea europaea HOM05D004784 ORTHO05D005762 3.1e-221 771.5 409 90.0
TAR629G2745 Trochodendron aralioides HOM05D004784 ORTHO05D005762 3.1e-221 771.5 409 90.7
Nitab4.5_0002695g0040 Nicotiana tabacum HOM05D004784 ORTHO05D005762 3.5e-220 768.1 403 91.1
Nitab4.5_0007963g0010 Nicotiana tabacum HOM05D004784 ORTHO05D005762 3.5e-220 768.1 403 90.8
Haze_06821 Corylus avellana HOM05D004784 ORTHO05D005762 4.5e-220 767.7 409 90.7
Rhsim13G0152700 Rhododendron simsii HOM05D004784 ORTHO05D005762 1.0e-219 766.5 409 91.2
MSTRG.7197 Avicennia marina HOM05D004784 ORTHO05D005762 2.2e-219 765.4 409 90.0
Glyma.09G004700 Glycine max HOM05D004784 ORTHO05D005762 1.1e-218 763.1 406 90.6
Duzib192G0808 Durio zibethinus HOM05D004784 ORTHO05D005762 2.5e-218 761.9 406 90.4
FvH4_3g01820 Fragaria vesca HOM05D004784 ORTHO05D005762 3.2e-218 761.5 409 90.2
Manes.17G025900 Manihot esculenta HOM05D004784 ORTHO05D005762 4.2e-218 761.1 406 90.6
Thecc.06G223500 Theobroma cacao HOM05D004784 ORTHO05D005762 5.5e-218 760.8 406 90.1
Glyma.17G012000 Glycine max HOM05D004784 ORTHO05D005762 7.2e-218 760.4 406 90.1
Gohir.A05G171500 Gossypium hirsutum HOM05D004784 ORTHO05D005762 7.2e-218 760.4 406 89.9
Gohir.D05G174600 Gossypium hirsutum HOM05D004784 ORTHO05D005762 9.4e-218 760.0 406 90.1
Sed0006727 Sechium edule HOM05D004784 ORTHO05D005762 9.4e-218 760.0 406 90.1
arahy.Tifrunner.gnm1.ann1.EH8QHL Arachis hypogaea HOM05D004784 ORTHO05D005762 1.6e-217 759.2 406 89.7
Eucgr.L02773 Eucalyptus grandis HOM05D004784 ORTHO05D005762 1.6e-217 759.2 409 89.7
Cc09_g01490 Coffea canephora HOM05D004784 ORTHO05D005762 2.1e-217 758.8 406 89.9
Solyc02g080810.3 Solanum lycopersicum HOM05D004784 ORTHO05D005762 2.1e-217 758.8 403 89.3
Nn1g03473 Nelumbo nucifera HOM05D004784 ORTHO05D005762 2.7e-217 758.4 448 83.9
FAN25G0478 Fragaria x ananassa HOM05D004784 ORTHO05D005762 4.7e-217 757.7 409 89.7
MD10G1323700 Malus domestica HOM05D004784 ORTHO05D005762 6.1e-217 757.3 409 90.0
PGSC0003DMG400016444 Solanum tuberosum HOM05D004784 ORTHO05D005762 6.1e-217 757.3 403 89.3
Glyma.07G262100 Glycine max HOM05D004784 ORTHO05D005762 8.0e-217 756.9 406 89.2
Glyma.15G109300 Glycine max HOM05D004784 ORTHO05D005762 8.0e-217 756.9 405 90.1
Peaxi162Scf00131g01117 Petunia axillaris HOM05D004784 ORTHO05D005762 8.0e-217 756.9 403 89.3
vmacro03682 Vaccinium macrocarpon HOM05D004784 ORTHO05D005762 8.0e-217 756.9 425 87.5
RcHm_v2.0_Chr5g0002651 Rosa chinensis HOM05D004784 ORTHO05D005762 1.0e-216 756.5 409 89.5
Phvul.003G080400 Phaseolus vulgaris HOM05D004784 ORTHO05D005762 1.4e-216 756.1 406 89.2
MBI02_g15378_MAGBIO Magnolia biondii HOM05D004784 ORTHO05D005762 1.8e-216 755.7 410 88.5
Sopen02g025500 Solanum pennellii HOM05D004784 ORTHO05D005762 1.8e-216 755.7 403 89.1
VMungo1215G1817 Vigna mungo HOM05D004784 ORTHO05D005762 2.3e-216 755.4 406 89.9
Gohir.A06G149200 Gossypium hirsutum HOM05D004784 ORTHO05D005762 4.0e-216 754.6 406 89.7
TPR.G37066 Trifolium pratense HOM05D004784 ORTHO05D005762 4.0e-216 754.6 406 88.7
Lalb_Chr18g0056491 Lupinus albus HOM05D004784 ORTHO05D005762 6.8e-216 753.8 403 89.8
Phvul.006G148700 Phaseolus vulgaris HOM05D004784 ORTHO05D005762 6.8e-216 753.8 406 89.4
COL.COLO4_31797 Corchorus olitorius HOM05D004784 ORTHO05D005762 8.8e-216 753.4 406 88.9
MELO3C002444.2 Cucumis melo HOM05D004784 ORTHO05D005762 8.8e-216 753.4 406 89.2
Lj6g0010262 Lotus japonicus HOM05D004784 ORTHO05D005762 1.5e-215 752.7 406 89.4
Hund21422 Selenicereus undatus HOM05D004784 ORTHO05D005762 1.5e-215 752.7 409 87.3
CAN.G1014.12 Capsicum annuum HOM05D004784 ORTHO05D005762 2.0e-215 752.3 403 89.6
Ca_21072_v3 Cicer arietinum L. HOM05D004784 ORTHO05D005762 2.0e-215 752.3 406 88.9
Migut.M01336 Erythranthe guttata HOM05D004784 ORTHO05D005762 2.0e-215 752.3 406 88.7
Gorai.010G181500 Gossypium raimondii HOM05D004784 ORTHO05D005762 2.0e-215 752.3 406 89.2
Potri.004G009600 Populus trichocarpa HOM05D004784 ORTHO05D005762 2.0e-215 752.3 409 88.0
Sed0013135 Sechium edule HOM05D004784 ORTHO05D005762 2.0e-215 752.3 406 88.9
FAN21G1227 Fragaria x ananassa HOM05D004784 ORTHO05D005762 3.4e-215 751.5 409 89.0
PGR142G1596 Punica granatum HOM05D004784 ORTHO05D005762 4.4e-215 751.1 411 89.3
Aqoxy1G03119 Aquilegia oxysepala HOM05D004784 ORTHO05D005762 5.7e-215 750.7 409 87.0
ClCG03G004610 Citrullus lanatus HOM05D004784 ORTHO05D005762 5.7e-215 750.7 406 88.9
Gohir.D06G155300 Gossypium hirsutum HOM05D004784 ORTHO05D005762 7.5e-215 750.4 406 88.9
CsaV3_1G010620 Cucumis sativus L. HOM05D004784 ORTHO05D005762 1.3e-214 749.6 406 88.9
Medtr4g132360 Medicago truncatula HOM05D004784 ORTHO05D005762 1.3e-214 749.6 406 88.4
Potri.011G006800 Populus trichocarpa HOM05D004784 ORTHO05D005762 1.7e-214 749.2 409 87.5
Ciclev10015433m.g Citrus clementina HOM05D004784 ORTHO05D005762 2.2e-214 748.8 410 88.0
DCAR_008168 Daucus carota HOM05D004784 ORTHO05D005762 2.8e-214 748.4 421 87.4
Sabra11G0005900 Salix brachista HOM05D004784 ORTHO05D005762 2.8e-214 748.4 409 87.8
Hund23455 Selenicereus undatus HOM05D004784 ORTHO05D005762 4.8e-214 747.7 409 87.3
PSO541G3045 Papaver somniferum HOM05D004784 ORTHO05D005762 1.1e-213 746.5 410 87.1
PSO675G1799 Papaver somniferum HOM05D004784 ORTHO05D005762 1.8e-213 745.7 410 87.1
RhsimUnG0232700 Rhododendron simsii HOM05D004784 ORTHO05D005762 1.8e-213 745.7 452 82.5
Atru.chr10.2254 Acer truncatum HOM05D004784 ORTHO05D005762 2.4e-213 745.3 409 87.3
THA.LOC104809494 Tarenaya hassleriana HOM05D004784 ORTHO05D005762 4.1e-213 744.6 409 86.8
Aa31LG1G2870 Aethionema arabicum HOM05D004784 ORTHO05D005762 5.4e-213 744.2 409 87.0
AT1G11860 Arabidopsis thaliana HOM05D004784 ORTHO05D005762 5.4e-213 744.2 409 86.6
A09p64310 Brassica napus HOM05D004784 ORTHO05D005762 5.4e-213 744.2 409 86.3
C08p47920 Brassica napus HOM05D004784 ORTHO05D005762 5.4e-213 744.2 409 86.6
BraA09t41774Z Brassica rapa HOM05D004784 ORTHO05D005762 5.4e-213 744.2 409 86.3
Psat4g005920 Pisum sativum HOM05D004784 ORTHO05D005762 5.4e-213 744.2 407 88.2
MSTRG.14637 Avicennia marina HOM05D004784 ORTHO05D005762 9.1e-213 743.4 409 86.8
Lalb_Chr15g0087671 Lupinus albus HOM05D004784 ORTHO05D005762 1.2e-212 743.0 403 88.8
AL1G23030 Arabidopsis lyrata HOM05D004784 ORTHO05D005762 2.0e-212 742.3 409 86.3
Thhalv10007781m.g Eutrema salsugineum HOM05D004784 ORTHO05D005762 2.0e-212 742.3 409 86.6
CANSAT56G2555 Cannabis sativa HOM05D004784 ORTHO05D005762 5.9e-212 740.7 406 88.2
Sp1g10470 Schrenkiella parvula HOM05D004784 ORTHO05D005762 7.7e-212 740.3 409 86.1
Ah.09g234740 Amaranthus hybridus HOM05D004784 ORTHO05D005762 1.3e-211 739.6 409 85.8
BolC8t52329H Brassica oleracea HOM05D004784 ORTHO05D005762 1.7e-211 739.2 409 85.8
Carub.0001s1151 Capsella rubella HOM05D004784 ORTHO05D005762 1.7e-211 739.2 409 86.1
arahy.Tifrunner.gnm1.ann1.PLZ2LX Arachis hypogaea HOM05D004784 ORTHO05D005762 3.8e-211 738.0 396 89.4
CARHR012170 Cardamine hirsuta HOM05D004784 ORTHO05D005762 3.8e-211 738.0 409 85.8
Ah.14g087950 Amaranthus hybridus HOM05D004784 ORTHO05D005762 5.0e-211 737.6 409 85.6
vmacro22539 Vaccinium macrocarpon HOM05D004784 ORTHO05D005762 5.0e-211 737.6 476 78.4
unitig_92.g28113 Utricularia gibba HOM05D004784 ORTHO05D005762 8.6e-211 736.9 406 87.2
SGA_v2.0_scaffold7G03812 Striga asiatica HOM05D004784 ORTHO05D005762 2.5e-210 735.3 436 83.3
AUR62022970 Chenopodium quinoa HOM05D004784 ORTHO05D005762 9.5e-210 733.4 406 85.2
C08p14960 Brassica napus HOM05D004784 ORTHO05D005762 1.6e-209 732.6 410 85.6
BolC8t49127H Brassica oleracea HOM05D004784 ORTHO05D005762 1.6e-209 732.6 410 85.6
BraA08t35239Z Brassica rapa HOM05D004784 ORTHO05D005762 1.6e-209 732.6 410 85.9
Sc24g0000220 Simmondsia chinensis HOM05D004784 ORTHO05D005762 6.1e-209 730.7 403 86.4
Nn030s41595 Nelumbo nucifera HOM05D004784 ORTHO05D005762 1.4e-208 729.6 377 93.1
CDE05G1701 Ceratophyllum demersum HOM05D004784 ORTHO05D005762 1.8e-208 729.2 406 85.7
AUR62012328 Chenopodium quinoa HOM05D004784 ORTHO05D005762 4.0e-208 728.0 406 84.5
CDE02G4424 Ceratophyllum demersum HOM05D004784 ORTHO05D005762 5.2e-208 727.6 406 86.2
Oeu040336.3 Olea europaea HOM05D004784 ORTHO05D005762 5.7e-207 724.2 520 72.1
Sc05g0009310 Simmondsia chinensis HOM05D004784 ORTHO05D005762 2.0e-204 715.7 405 83.5
Gorai.009G179900 Gossypium raimondii HOM05D004784 ORTHO05D005762 2.7e-204 715.3 381 90.6
Sabra04G0005000 Salix brachista HOM05D004784 ORTHO05D005762 3.8e-203 711.4 385 88.1
EL10Ac6g15683 Beta vulgaris HOM05D004784 ORTHO05D005762 1.5e-202 709.5 452 76.1
Lsat_1_v5_gn_7_16480 Lactuca sativa HOM05D004784 ORTHO05D005762 6.1e-201 704.1 401 85.5
ATR0794G107 Amborella trichopoda HOM05D004784 ORTHO05D005762 1.5e-199 699.5 415 83.1
HPP92_004130 Vanilla planifolia HOM05D004784 ORTHO05D005762 9.8e-199 696.8 413 81.6
GSVIVG01012702001 Vitis vinifera HOM05D004784 ORTHO05D005762 3.7e-198 694.9 358 93.6
A08p33210 Brassica napus HOM05D004784 ORTHO05D005762 1.9e-197 692.6 410 82.4
HanXRQChr15g0470421 Helianthus annuus HOM05D004784 ORTHO05D005762 1.3e-190 669.8 355 90.1
Os04g0623800 Oryza sativa ssp. japonica HOM05D004784 ORTHO05D005762 1.2e-188 663.3 401 79.8
SEGI_27497 Sequoiadendron giganteum HOM05D004784 ORTHO05D005762 2.7e-188 662.1 409 77.0
BcaB03g13227 Brassica carinata HOM05D004784 ORTHO05D005762 4.6e-188 661.4 358 87.7
Zm00001eb070250 Zea mays HOM05D004784 ORTHO05D005762 4.3e-186 654.8 392 80.1
ECA236G1893 Erigeron canadensis HOM05D004784 ORTHO05D005762 8.9e-184 647.1 406 78.8
Pp3c4_15010 Physcomitrium patens HOM05D004784 ORTHO05D005762 5.2e-176 621.3 404 72.3
Pp3c12_9500 Physcomitrium patens HOM05D004784 ORTHO05D005762 5.8e-175 617.8 403 72.7
TAR627G1106 Trochodendron aralioides HOM05D004784 ORTHO05D005762 1.3e-174 616.7 320 91.9
AagrBONN_evm.TU.Sc2ySwM_344.1952 Anthoceros agrestis HOM05D004784 ORTHO05D005762 7.8e-172 607.4 406 72.7
Mapoly0129s0024 Marchantia polymorpha HOM05D004784 ORTHO05D005762 5.6e-170 601.3 380 72.9
CSS0014504 Camellia sinensis var. sinensis HOM05D004784 ORTHO05D005762 3.5e-164 582.0 387 76.7
SMO352G0047 Selaginella moellendorffii HOM05D004784 ORTHO05D005762 3.9e-163 578.6 401 68.1
A06p08340 Brassica napus HOM05D004784 ORTHO05D005762 4.2e-157 558.5 409 69.4
TAR626G0807 Trochodendron aralioides HOM05D004784 ORTHO05D005762 4.9e-150 535.0 325 81.2
Actinidia26902 Actinidia chinensis HOM05D004784 ORTHO05D005762 1.3e-147 526.9 310 85.2
Cre03.g193750 Chlamydomonas reinhardtii HOM05D004784 ORTHO05D005762 2.1e-140 503.1 401 61.3
Eucgr.E03909 Eucalyptus grandis HOM05D004784 ORTHO05D005762 7.9e-132 474.6 245 93.1
Atru.chr8.533 Acer truncatum HOM05D004784 ORTHO05D005762 1.7e-129 466.8 258 85.7
PRCOL_00007041 Prasinoderma coloniale HOM05D004784 ORTHO05D005762 8.8e-123 444.5 367 60.8
MCO15G045 Micromonas commoda HOM05D004784 ORTHO05D005762 3.5e-119 432.6 386 56.2
MD05G1348800 Malus domestica HOM05D004784 ORTHO05D005762 1.0e-118 431.0 238 87.0
Lalb_Chr20g0118761 Lupinus albus HOM05D004784 ORTHO05D005762 8.8e-115 417.9 225 88.9
BraA06t24032Z Brassica rapa HOM05D000911 ORTHO05D001266 8.0e-108 394.8 239 79.5
Cpa.g.sc152.29 Carica papaya HOM05D004784 ORTHO05D005762 1.5e-98 364.0 197 88.3
Cfa026602 Carpinus fangiana HOM05D004784 ORTHO05D005762 1.1e-77 294.7 393 43.3
Haze_26660 Corylus avellana HOM05D004784 ORTHO05D005762 1.4e-75 287.7 393 43.8
CBR_g24348 Chara braunii HOM05D004784 ORTHO05D005762 1.2e-71 274.6 183 74.9
Sopen07g011340 Solanum pennellii HOM05D004784 ORTHO05D005762 1.5e-69 267.7 179 73.2
EL10Ac1g01135 Beta vulgaris HOM05D004784 ORTHO05D005762 2.0e-58 230.7 142 75.4
EL10Ac2g03767 Beta vulgaris HOM05D004784 ORTHO05D005762 3.4e-58 229.9 141 75.9
Atru.chr8.531 Acer truncatum HOM05D004784 ORTHO05D005762 1.2e-55 221.5 124 83.9
Actinidia05506 Actinidia chinensis HOM05D004784 ORTHO05D005762 1.5e-50 204.5 130 80.0
Actinidia11861 Actinidia chinensis HOM05D004784 ORTHO05D005762 2.8e-20 104.0 58 79.3
Actinidia15969 Actinidia chinensis HOM05D004784 ORTHO05D058202 3.7e-20 103.6 128 47.7
Lsat_1_v5_gn_9_118621 Lactuca sativa HOM05D006894 ORTHO05D008724 2.0e-10 71.2 333 24.0
PGR042G0448 Punica granatum HOM05D006894 ORTHO05D008724 8.5e-09 65.9 320 22.2


User provided reference genes

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