Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv13870 Davidia involucrata HOM05D060562 ORTHO05D011090 4.1e-87 324.7 166 100.0
Dinv17815 Davidia involucrata HOM05D060562 ORTHO05D011090 3.6e-83 311.6 160 98.8
Dinv17817 Davidia involucrata HOM05D000109 ORTHO05D000520 5.0e-16 88.6 47 95.7
Dinv13868 Davidia involucrata HOM05D000109 ORTHO05D011090 1.4e-15 87.0 82 61.0
CSS0006969 Camellia sinensis var. sinensis HOM05D000109 ORTHO05D011090 2.0e-12 76.6 64 65.6
CSS0040859 Camellia sinensis var. sinensis HOM05D000109 ORTHO05D000520 1.3e-11 73.9 64 62.5
TAR629G2177 Trochodendron aralioides HOM05D000109 ORTHO05D000520 4.8e-11 72.0 60 60.0
CSS0040314 Camellia sinensis var. sinensis HOM05D000109 ORTHO05D000520 1.4e-10 70.5 82 46.3
Ciclev10014190m.g Citrus clementina HOM05D000109 ORTHO05D000520 1.8e-10 70.1 51 66.7
CSS0025862 Camellia sinensis var. sinensis HOM05D000109 ORTHO05D000520 2.4e-10 69.7 73 49.3
PSO541G1253 Papaver somniferum HOM05D000109 ORTHO05D000520 3.1e-10 69.3 50 68.0
Cc05_g04820 Coffea canephora HOM05D000109 ORTHO05D000520 5.3e-10 68.6 81 46.9
Dinv05443 Davidia involucrata HOM05D000109 ORTHO05D000520 5.3e-10 68.6 50 64.0
Nn1g03586 Nelumbo nucifera HOM05D000109 ORTHO05D000520 9.1e-10 67.8 78 48.7
PGR142G1437 Punica granatum HOM05D000109 ORTHO05D000520 9.1e-10 67.8 51 58.8
MBI02_g15250_MAGBIO Magnolia biondii HOM05D000109 ORTHO05D000520 1.2e-09 67.4 71 56.3
MBI02_g15251_MAGBIO Magnolia biondii HOM05D000109 ORTHO05D000520 1.2e-09 67.4 71 56.3
PSO675G2504 Papaver somniferum HOM05D000109 ORTHO05D000520 1.2e-09 67.4 50 66.0
Lj8A125T70 Lonicera japonica HOM05D000109 ORTHO05D000520 1.5e-09 67.0 56 55.4
Hma1.2p1_0328F.1_g126820 Hydrangea macrophylla HOM05D000109 ORTHO05D000520 3.4e-09 65.9 50 62.0
Hma1.2p1_0328F.1_g126840 Hydrangea macrophylla HOM05D000109 ORTHO05D000520 4.5e-09 65.5 58 56.9
FAN02G3901 Fragaria x ananassa HOM05D000109 ORTHO05D000520 5.9e-09 65.1 66 50.0
SalBow1G8713 Salvia bowleyana HOM05D000109 ORTHO05D000520 5.9e-09 65.1 60 53.3
Atru.chr6.3174 Acer truncatum HOM05D000109 ORTHO05D011090 7.7e-09 64.7 59 52.5
CARHR126220 Cardamine hirsuta HOM05D000109 ORTHO05D000520 7.7e-09 64.7 46 69.6
Phvul.005G114900 Phaseolus vulgaris HOM05D000109 ORTHO05D000520 1.0e-08 64.3 70 48.6
CiPaw.03G160600 Carya illinoinensis HOM05D000109 ORTHO05D000520 1.3e-08 63.9 44 68.2
CsaV3_2G035000 Cucumis sativus L. HOM05D000109 ORTHO05D000520 1.3e-08 63.9 50 60.0
DCAR_019277 Daucus carota HOM05D000109 ORTHO05D000520 1.3e-08 63.9 46 63.0
AL4G27790 Arabidopsis lyrata HOM05D000109 ORTHO05D000520 1.7e-08 63.5 49 59.2
MELO3C019260.2 Cucumis melo HOM05D000109 ORTHO05D000520 1.7e-08 63.5 50 60.0
FAN14G5631 Fragaria x ananassa HOM05D000109 ORTHO05D000520 1.7e-08 63.5 66 48.5
Nn1g07094 Nelumbo nucifera HOM05D000109 ORTHO05D000520 1.7e-08 63.5 50 62.0
TWI36G1107 Tripterygium wilfordii HOM05D000109 ORTHO05D000520 1.7e-08 63.5 51 56.9
Sed0004654 Sechium edule HOM05D000109 ORTHO05D000520 2.2e-08 63.2 50 58.0
BcaB01g03980 Brassica carinata HOM05D000109 ORTHO05D000520 2.9e-08 62.8 49 63.3
BcaB06g28590 Brassica carinata HOM05D000109 ORTHO05D000520 2.9e-08 62.8 79 46.8
Eucgr.K00798 Eucalyptus grandis HOM05D000109 ORTHO05D000520 2.9e-08 62.8 48 64.6
Sc21g0001470 Simmondsia chinensis HOM05D000109 ORTHO05D011090 2.9e-08 62.8 68 50.0
MSTRG.14150 Avicennia marina HOM05D000109 ORTHO05D000520 5.0e-08 62.0 56 50.0
FvH4_6g43290 Fragaria vesca HOM05D000109 ORTHO05D000520 5.0e-08 62.0 59 52.5
Lalb_Chr14g0375791 Lupinus albus HOM05D000109 ORTHO05D000520 5.0e-08 62.0 50 56.0
FAN05G1414 Fragaria x ananassa HOM05D000109 ORTHO05D000520 6.5e-08 61.6 59 52.5
Sc21g0001510 Simmondsia chinensis HOM05D000109 ORTHO05D011090 6.5e-08 61.6 68 48.5
A05p13170 Brassica napus HOM05D000109 ORTHO05D000520 8.5e-08 61.2 49 59.2
C04p17250 Brassica napus HOM05D000109 ORTHO05D000520 8.5e-08 61.2 49 59.2
BolC4t23277H Brassica oleracea HOM05D000109 ORTHO05D000520 8.5e-08 61.2 49 59.2
BraA05t20258Z Brassica rapa HOM05D000109 ORTHO05D000520 8.5e-08 61.2 49 59.2
Os07g0522600 Oryza sativa ssp. japonica HOM05D000109 ORTHO05D000520 8.5e-08 61.2 72 43.1
Prupe.3G217900 Prunus persica HOM05D000109 ORTHO05D000520 8.5e-08 61.2 66 50.0
PGSC0003DMG400025500 Solanum tuberosum HOM05D000109 ORTHO05D000520 8.5e-08 61.2 67 47.8
Thecc.02G313600 Theobroma cacao HOM05D000109 ORTHO05D000520 8.5e-08 61.2 56 51.8
Carub.0004s1375 Capsella rubella HOM05D000109 ORTHO05D000520 1.1e-07 60.8 50 58.0
MBI18_g06565_MAGBIO Magnolia biondii HOM05D000109 ORTHO05D000520 1.1e-07 60.8 82 42.7
Manes.12G075100 Manihot esculenta HOM05D000109 ORTHO05D000520 1.1e-07 60.8 50 54.0
Peaxi162Scf00007g00095 Petunia axillaris HOM05D000109 ORTHO05D000520 1.1e-07 60.8 60 48.3
QL08p033247 Quercus lobata HOM05D000109 ORTHO05D000520 1.1e-07 60.8 50 58.0
Sp4g14770 Schrenkiella parvula HOM05D000109 ORTHO05D000520 1.1e-07 60.8 49 61.2
THA.LOC104800988 Tarenaya hassleriana HOM05D000109 ORTHO05D000520 1.1e-07 60.8 72 44.4
CSS0043106 Camellia sinensis var. sinensis HOM05D000109 ORTHO05D011090 1.4e-07 60.5 77 41.6
Nitab4.5_0007092g0020 Nicotiana tabacum HOM05D000109 ORTHO05D000520 1.4e-07 60.5 77 41.6
Sabra02G0175600 Salix brachista HOM05D000109 ORTHO05D000520 1.4e-07 60.5 78 39.7
AT2G32400 Arabidopsis thaliana HOM05D000109 ORTHO05D000520 1.9e-07 60.1 65 52.3
BcaB02g10471 Brassica carinata HOM05D000109 ORTHO05D000520 1.9e-07 60.1 49 57.1
BcaC02g11325 Brassica carinata HOM05D000109 ORTHO05D000520 1.9e-07 60.1 49 57.1
CSS0007573 Camellia sinensis var. sinensis HOM05D000109 ORTHO05D011090 2.5e-07 59.7 71 45.1
Thhalv10016204m.g Eutrema salsugineum HOM05D000109 ORTHO05D000520 2.5e-07 59.7 49 55.1
Glyma.12G194100 Glycine max HOM05D000109 ORTHO05D000520 2.5e-07 59.7 50 52.0
Psat5g264120 Pisum sativum HOM05D000109 ORTHO05D000520 2.5e-07 59.7 65 47.7
MD09G1070100 Malus domestica HOM05D000109 ORTHO05D000520 3.2e-07 59.3 80 43.8
Rhsim10G0193100 Rhododendron simsii HOM05D000109 ORTHO05D000520 3.2e-07 59.3 67 46.3
C04p61760 Brassica napus HOM05D000109 ORTHO05D000520 4.2e-07 58.9 54 53.7
BolC4t27660H Brassica oleracea HOM05D000109 ORTHO05D000520 4.2e-07 58.9 54 53.7
Cpa.g.sc8.217 Carica papaya HOM05D000109 ORTHO05D000520 4.2e-07 58.9 50 56.0
CDE05G3679 Ceratophyllum demersum HOM05D000109 ORTHO05D000520 4.2e-07 58.9 51 52.9
MD09G1069900 Malus domestica HOM05D000109 ORTHO05D000520 4.2e-07 58.9 75 45.3
VMungo1080G1845 Vigna mungo HOM05D000109 ORTHO05D000520 4.2e-07 58.9 65 46.2
BcaC01g05906 Brassica carinata HOM05D000109 ORTHO05D000520 5.5e-07 58.5 49 59.2
C03p21190 Brassica napus HOM05D000109 ORTHO05D000520 5.5e-07 58.5 49 59.2
BolC3t14502H Brassica oleracea HOM05D000109 ORTHO05D000520 5.5e-07 58.5 49 59.2
CSS0038675 Camellia sinensis var. sinensis HOM05D000109 ORTHO05D011090 5.5e-07 58.5 77 39.0
Gohir.D13G088200 Gossypium hirsutum HOM05D000109 ORTHO05D000520 5.5e-07 58.5 56 46.4
Gorai.013G100700 Gossypium raimondii HOM05D000109 ORTHO05D000520 5.5e-07 58.5 56 46.4
CSS0019202 Camellia sinensis var. sinensis HOM05D000109 ORTHO05D000520 7.2e-07 58.2 84 39.3
CAN.G846.9 Capsicum annuum HOM05D000109 ORTHO05D000520 7.2e-07 58.2 72 43.1
COL.COLO4_27702 Corchorus olitorius HOM05D000109 ORTHO05D000520 7.2e-07 58.2 56 48.2
MD17G1096200 Malus domestica HOM05D000109 ORTHO05D000520 7.2e-07 58.2 59 50.8
Solyc07g052390.3 Solanum lycopersicum HOM05D000109 ORTHO05D000520 7.2e-07 58.2 73 42.5
TAR629G3259 Trochodendron aralioides HOM05D000109 ORTHO05D000520 7.2e-07 58.2 66 48.5
A03p18160 Brassica napus HOM05D000109 ORTHO05D000520 9.4e-07 57.8 49 57.1
Haze_12874 Corylus avellana HOM05D000109 ORTHO05D000520 9.4e-07 57.8 48 56.2
Dinv40199 Davidia involucrata HOM05D000109 ORTHO05D000520 9.4e-07 57.8 66 51.5
MBI12_g40210_MAGBIO Magnolia biondii HOM05D000109 ORTHO05D011090 9.4e-07 57.8 82 40.2
MD09G1070000 Malus domestica HOM05D000109 ORTHO05D000520 9.4e-07 57.8 59 49.2
Oeu011089.1 Olea europaea HOM05D000109 ORTHO05D000520 9.4e-07 57.8 79 43.0
PSO675G1249 Papaver somniferum HOM05D000109 ORTHO05D000520 9.4e-07 57.8 73 41.1
PGR142G0046 Punica granatum HOM05D000109 ORTHO05D000520 9.4e-07 57.8 77 40.3
Sed0002695 Sechium edule HOM05D000109 ORTHO05D000520 9.4e-07 57.8 50 54.0
ATR0752G033 Amborella trichopoda HOM05D000109 ORTHO05D000520 1.2e-06 57.4 82 37.8
Glyma.13G308500 Glycine max HOM05D000109 ORTHO05D000520 1.2e-06 57.4 50 52.0
Oeu041928.1 Olea europaea HOM05D000109 ORTHO05D000520 1.2e-06 57.4 78 39.7
Oeu041929.1 Olea europaea HOM05D000109 ORTHO05D000520 1.2e-06 57.4 78 39.7
arahy.Tifrunner.gnm1.ann1.U5CYT6 Arachis hypogaea HOM05D000109 ORTHO05D000520 1.6e-06 57.0 50 52.0
BraA03t11076Z Brassica rapa HOM05D000109 ORTHO05D000520 1.6e-06 57.0 46 60.9
CiPaw.04G116500 Carya illinoinensis HOM05D000109 ORTHO05D000520 1.6e-06 57.0 71 42.3
ClCG02G001870 Citrullus lanatus HOM05D000109 ORTHO05D000520 1.6e-06 57.0 59 45.8
Haze_03624 Corylus avellana HOM05D000109 ORTHO05D000520 1.6e-06 57.0 84 44.0
Dinv28313 Davidia involucrata HOM05D000109 ORTHO05D000520 1.6e-06 57.0 66 47.0
Gohir.A13G094200 Gossypium hirsutum HOM05D000109 ORTHO05D000520 1.6e-06 57.0 56 46.4
Lj4A422G23 Lonicera japonica HOM05D000109 ORTHO05D000520 1.6e-06 57.0 91 36.3
Sed0011414 Sechium edule HOM05D000109 ORTHO05D000520 1.6e-06 57.0 54 50.0
arahy.Tifrunner.gnm1.ann1.V07PF1 Arachis hypogaea HOM05D000109 ORTHO05D000520 2.1e-06 56.6 105 37.1
Duzib251G0761 Durio zibethinus HOM05D000109 ORTHO05D000520 2.1e-06 56.6 51 51.0
MD09G1107700 Malus domestica HOM05D000109 ORTHO05D011090 2.1e-06 56.6 73 45.2
Manes.13G070500 Manihot esculenta HOM05D000109 ORTHO05D000520 2.1e-06 56.6 50 54.0
Medtr2g088430 Medicago truncatula HOM05D000109 ORTHO05D000520 2.1e-06 56.6 49 55.1
Duzib251G0263 Durio zibethinus HOM05D000109 ORTHO05D000520 2.7e-06 56.2 56 48.2
Sabra14G0115800 Salix brachista HOM05D000109 ORTHO05D000520 2.7e-06 56.2 50 52.0
Thecc.02G313500 Theobroma cacao HOM05D000109 ORTHO05D000520 2.7e-06 56.2 51 47.1
vmacro12208 Vaccinium macrocarpon HOM05D000109 ORTHO05D000520 2.7e-06 56.2 74 39.2
Aa31LG5G4680 Aethionema arabicum HOM05D000109 ORTHO05D000520 3.6e-06 55.8 49 53.1
arahy.Tifrunner.gnm1.ann1.W5RZU2 Arachis hypogaea HOM05D000109 ORTHO05D000520 3.6e-06 55.8 105 36.2
FvH4_6g43291 Fragaria vesca HOM05D000109 ORTHO05D000520 3.6e-06 55.8 75 44.0
FAN09G3587 Fragaria x ananassa HOM05D000109 ORTHO05D000520 3.6e-06 55.8 75 44.0
Prupe.3G217800 Prunus persica HOM05D000109 ORTHO05D000520 3.6e-06 55.8 37 67.6
Rhsim10G0193800 Rhododendron simsii HOM05D000109 ORTHO05D000520 3.6e-06 55.8 72 44.4
Sabra05G0196900 Salix brachista HOM05D000109 ORTHO05D000520 3.6e-06 55.8 63 47.6
TPR.G4163 Trifolium pratense HOM05D000109 ORTHO05D000520 3.6e-06 55.8 49 55.1
TWI36G1764 Tripterygium wilfordii HOM05D000109 ORTHO05D000520 3.6e-06 55.8 51 51.0
TWI75G0524 Tripterygium wilfordii HOM05D000109 ORTHO05D000520 3.6e-06 55.8 78 38.5
Aqoxy1G03296 Aquilegia oxysepala HOM05D000109 ORTHO05D000520 4.7e-06 55.5 56 50.0
Cfa004791 Carpinus fangiana HOM05D000109 ORTHO05D000520 4.7e-06 55.5 79 43.0
Cfa014414 Carpinus fangiana HOM05D000109 ORTHO05D000520 4.7e-06 55.5 50 52.0
Gohir.D05G181500 Gossypium hirsutum HOM05D000109 ORTHO05D000520 4.7e-06 55.5 66 43.9
Gorai.009G186500 Gossypium raimondii HOM05D000109 ORTHO05D000520 4.7e-06 55.5 66 43.9
HanXRQChr04g0127611 Helianthus annuus HOM05D000109 ORTHO05D000520 4.7e-06 55.5 50 52.0
Lj3g0002322 Lotus japonicus HOM05D000109 ORTHO05D000520 4.7e-06 55.5 46 56.5
Gohir.D12G160200 Gossypium hirsutum HOM05D000109 ORTHO05D000520 6.1e-06 55.1 70 38.6
Os07g0103100 Oryza sativa ssp. japonica HOM05D000109 ORTHO05D000520 6.1e-06 55.1 72 40.3
PGR119G0270 Punica granatum HOM05D000109 ORTHO05D000520 6.1e-06 55.1 66 47.0
Zm00001eb106130 Zea mays HOM05D000109 ORTHO05D000520 6.1e-06 55.1 70 42.9
CSS0044921 Camellia sinensis var. sinensis HOM05D000109 ORTHO05D000520 7.9e-06 54.7 51 52.9
Cfa007094 Carpinus fangiana HOM05D000109 ORTHO05D000520 7.9e-06 54.7 71 42.3
AUR62035147 Chenopodium quinoa HOM05D000109 ORTHO05D000520 7.9e-06 54.7 77 36.4
AUR62042587 Chenopodium quinoa HOM05D000109 ORTHO05D000520 7.9e-06 54.7 78 35.9
Ciclev10024825m.g Citrus clementina HOM05D000109 ORTHO05D000520 7.9e-06 54.7 70 47.1
CsaV3_4G037470 Cucumis sativus L. HOM05D000109 ORTHO05D000520 7.9e-06 54.7 71 46.5
DCAR_012947 Daucus carota HOM05D000109 ORTHO05D000520 7.9e-06 54.7 77 39.0
PSO541G5543 Papaver somniferum HOM05D000109 ORTHO05D000520 7.9e-06 54.7 67 43.3
Rhsim10G0193400 Rhododendron simsii HOM05D000109 ORTHO05D000520 7.9e-06 54.7 67 43.3
Sp1g37300 Schrenkiella parvula HOM05D000109 ORTHO05D000520 7.9e-06 54.7 64 42.2
TWI56G0649 Tripterygium wilfordii HOM05D000109 ORTHO05D000520 7.9e-06 54.7 51 47.1
HPP92_003715 Vanilla planifolia HOM05D005661 ORTHO05D007997 7.9e-06 54.7 60 41.7


User provided reference genes

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