Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv13745 Davidia involucrata HOM05D004319 ORTHO05D035081 9.4e-40 166.4 83 100.0
Dinv34417 Davidia involucrata HOM05D004319 ORTHO05D005433 5.2e-14 80.9 40 100.0
TAR623G1287 Trochodendron aralioides HOM05D004319 ORTHO05D005433 6.8e-14 80.5 40 97.5
CSS0043457 Camellia sinensis var. sinensis HOM05D004319 ORTHO05D005433 1.2e-13 79.7 40 97.5
Dinv20962 Davidia involucrata HOM05D004319 ORTHO05D005433 1.2e-13 79.7 40 97.5
Dinv20981 Davidia involucrata HOM05D004319 ORTHO05D005433 1.2e-13 79.7 40 97.5
TAR369G0377 Trochodendron aralioides HOM05D004319 ORTHO05D005433 1.2e-13 79.7 40 97.5
Actinidia29683 Actinidia chinensis HOM05D004319 ORTHO05D005433 4.4e-13 77.8 40 95.0
CAN.G255.4 Capsicum annuum HOM05D004319 ORTHO05D005433 4.4e-13 77.8 40 92.5
CiPaw.02G190500 Carya illinoinensis HOM05D004319 ORTHO05D005433 4.4e-13 77.8 40 95.0
Lj8C71T5 Lonicera japonica HOM05D004319 ORTHO05D005433 4.4e-13 77.8 40 95.0
Rhsim09G0172500 Rhododendron simsii HOM05D004319 ORTHO05D005433 4.4e-13 77.8 40 92.5
Nitab4.5_0000051g0230 Nicotiana tabacum HOM05D004319 ORTHO05D005433 7.5e-13 77.0 40 92.5
Thecc.04G298200 Theobroma cacao HOM05D004319 ORTHO05D005433 7.5e-13 77.0 41 90.2
Cfa001356 Carpinus fangiana HOM05D004319 ORTHO05D005433 9.8e-13 76.6 40 95.0
Duzib106G1285 Durio zibethinus HOM05D004319 ORTHO05D005433 9.8e-13 76.6 40 92.5
Duzib114G0905 Durio zibethinus HOM05D004319 ORTHO05D005433 9.8e-13 76.6 40 92.5
Nn1g00865 Nelumbo nucifera HOM05D004319 ORTHO05D005433 9.8e-13 76.6 40 92.5
Nitab4.5_0004737g0040 Nicotiana tabacum HOM05D004319 ORTHO05D005433 9.8e-13 76.6 40 90.0
SalBow6G1306 Salvia bowleyana HOM05D004319 ORTHO05D005433 9.8e-13 76.6 41 90.2
Thecc.10G025300 Theobroma cacao HOM05D004319 ORTHO05D005433 9.8e-13 76.6 40 92.5
ClCG11G006300 Citrullus lanatus HOM05D004319 ORTHO05D005433 1.3e-12 76.3 40 92.5
MELO3C008285.2 Cucumis melo HOM05D004319 ORTHO05D005433 1.3e-12 76.3 40 92.5
Nn2g14829 Nelumbo nucifera HOM05D004319 ORTHO05D005433 1.3e-12 76.3 40 92.5
Solyc11g013440.2 Solanum lycopersicum HOM05D004319 ORTHO05D005433 1.3e-12 76.3 40 90.0
Sopen11g008430 Solanum pennellii HOM05D004319 ORTHO05D005433 1.3e-12 76.3 40 90.0
PGSC0003DMG400027182 Solanum tuberosum HOM05D004319 ORTHO05D005433 1.3e-12 76.3 40 92.5
CsaV3_6G001680 Cucumis sativus L. HOM05D004319 ORTHO05D005433 1.7e-12 75.9 40 90.0
Hma1.2p1_1409F.1_g281690 Hydrangea macrophylla HOM05D004319 ORTHO05D005433 1.7e-12 75.9 40 92.5
Oeu039013.1 Olea europaea HOM05D004319 ORTHO05D005433 1.7e-12 75.9 40 90.0
Peaxi162Scf00957g00227 Petunia axillaris HOM05D004319 ORTHO05D005433 1.7e-12 75.9 40 90.0
Cpa.g.sc19.202 Carica papaya HOM05D004319 ORTHO05D005433 2.2e-12 75.5 40 92.5
Gohir.A13G016400 Gossypium hirsutum HOM05D004319 ORTHO05D005433 2.2e-12 75.5 40 90.0
Gohir.D13G017500 Gossypium hirsutum HOM05D004319 ORTHO05D005433 2.2e-12 75.5 40 90.0
Gorai.013G019400 Gossypium raimondii HOM05D004319 ORTHO05D005433 2.2e-12 75.5 40 90.0
MBI06_g08188_MAGBIO Magnolia biondii HOM05D004319 ORTHO05D005433 2.2e-12 75.5 40 92.5
Prupe.2G247200 Prunus persica HOM05D004319 ORTHO05D005433 2.2e-12 75.5 40 92.5
Solyc05g052690.4 Solanum lycopersicum HOM05D004319 ORTHO05D005433 2.2e-12 75.5 40 92.5
Actinidia13922 Actinidia chinensis HOM05D004319 ORTHO05D005433 2.8e-12 75.1 40 95.0
Cc02_g06830 Coffea canephora HOM05D004319 ORTHO05D005433 2.8e-12 75.1 40 90.0
PSO339G4101 Papaver somniferum HOM05D004319 ORTHO05D005433 2.8e-12 75.1 40 90.0
PSO801G0608 Papaver somniferum HOM05D004319 ORTHO05D005433 2.8e-12 75.1 40 90.0
MSTRG.8969 Avicennia marina HOM05D004319 ORTHO05D005433 3.7e-12 74.7 40 90.0
CiPaw.01G296400 Carya illinoinensis HOM05D004319 ORTHO05D005433 3.7e-12 74.7 62 61.3
MD01G1148100 Malus domestica HOM05D004319 ORTHO05D005433 3.7e-12 74.7 51 78.4
CDE04G2342 Ceratophyllum demersum HOM05D004319 ORTHO05D005433 4.8e-12 74.3 40 90.0
Sed0000856 Sechium edule HOM05D004319 ORTHO05D005433 4.8e-12 74.3 40 87.5
PGSC0003DMG400027787 Solanum tuberosum HOM05D004319 ORTHO05D005433 4.8e-12 74.3 40 87.5
MD07G1215300 Malus domestica HOM05D004319 ORTHO05D005433 6.3e-12 73.9 51 78.4
Sopen05g031210 Solanum pennellii HOM05D004319 ORTHO05D005433 6.3e-12 73.9 40 90.0
GSVIVG01016359001 Vitis vinifera HOM05D004319 ORTHO05D005433 6.3e-12 73.9 40 90.0
ECA232G0842 Erigeron canadensis HOM05D004319 ORTHO05D005433 8.3e-12 73.6 40 87.5
ECA238G0079 Erigeron canadensis HOM05D004319 ORTHO05D005433 8.3e-12 73.6 40 87.5
HanXRQChr07g0202471 Helianthus annuus HOM05D004319 ORTHO05D005433 8.3e-12 73.6 40 87.5
Manes.07G126300 Manihot esculenta HOM05D004319 ORTHO05D005433 8.3e-12 73.6 40 87.5
Oeu036042.1 Olea europaea HOM05D004319 ORTHO05D035081 8.3e-12 73.6 40 85.0
Oeu038001.1 Olea europaea HOM05D004319 ORTHO05D005433 8.3e-12 73.6 40 85.0
Potri.010G192000 Populus trichocarpa HOM05D004319 ORTHO05D005433 8.3e-12 73.6 40 85.0
Sabra10G0147700 Salix brachista HOM05D004319 ORTHO05D005433 8.3e-12 73.6 40 85.0
CANSAT56G2826 Cannabis sativa HOM05D004319 ORTHO05D005433 1.1e-11 73.2 40 87.5
HanXRQChr14g0460011 Helianthus annuus HOM05D004319 ORTHO05D005433 1.1e-11 73.2 40 85.0
Nitab4.5_0004338g0100 Nicotiana tabacum HOM05D004319 ORTHO05D005433 1.1e-11 73.2 40 90.0
Sed0009807 Sechium edule HOM05D004319 ORTHO05D005433 1.1e-11 73.2 40 87.5
SGA_v2.0_scaffold60G21025 Striga asiatica HOM05D004319 ORTHO05D005433 1.1e-11 73.2 40 87.5
Aqoxy2G03884 Aquilegia oxysepala HOM05D004319 ORTHO05D005433 1.4e-11 72.8 40 85.0
Hma1.2p1_2079F.1_g313450 Hydrangea macrophylla HOM05D004319 ORTHO05D005433 1.8e-11 72.4 40 85.0
FvH4_7g24110 Fragaria vesca HOM05D004319 ORTHO05D005433 2.4e-11 72.0 39 89.7
FAN01G1285 Fragaria x ananassa HOM05D004319 ORTHO05D005433 2.4e-11 72.0 39 89.7
FAN06G4692 Fragaria x ananassa HOM05D004319 ORTHO05D005433 2.4e-11 72.0 39 89.7
FAN10G3467 Fragaria x ananassa HOM05D004319 ORTHO05D005433 2.4e-11 72.0 39 89.7
Lsat_1_v5_gn_2_121560 Lactuca sativa HOM05D004319 ORTHO05D005433 2.4e-11 72.0 40 85.0
RcHm_v2.0_Chr1g0369531 Rosa chinensis HOM05D004319 ORTHO05D005433 2.4e-11 72.0 39 89.7
ATR1127G008 Amborella trichopoda HOM05D004319 ORTHO05D005433 3.1e-11 71.6 40 85.0
COL.COLO4_25650 Corchorus olitorius HOM05D004319 ORTHO05D005433 3.1e-11 71.6 40 85.0
DCAR_032139 Daucus carota HOM05D004319 ORTHO05D005433 3.1e-11 71.6 40 85.0
Gohir.D10G245400 Gossypium hirsutum HOM05D004319 ORTHO05D005433 3.1e-11 71.6 40 87.5
Gorai.011G283100 Gossypium raimondii HOM05D004319 ORTHO05D005433 3.1e-11 71.6 40 87.5
Nitab4.5_0002100g0070 Nicotiana tabacum HOM05D004319 ORTHO05D005433 5.4e-11 70.9 40 87.5
SEGI_23595 Sequoiadendron giganteum HOM05D004319 ORTHO05D005433 5.4e-11 70.9 40 80.0
Medtr3g070190 Medicago truncatula HOM05D004319 ORTHO05D005433 7.0e-11 70.5 40 82.5
Psat5g126960 Pisum sativum HOM05D004319 ORTHO05D005433 7.0e-11 70.5 40 82.5
TWI73G0284 Tripterygium wilfordii HOM05D004319 ORTHO05D005433 7.0e-11 70.5 40 85.0
Atru.chr12.232 Acer truncatum HOM05D004319 ORTHO05D005433 1.2e-10 69.7 40 82.5
AT2G39990 Arabidopsis thaliana HOM05D004319 ORTHO05D005433 1.2e-10 69.7 41 80.5
FAN03G2018 Fragaria x ananassa HOM05D004319 ORTHO05D005433 1.2e-10 69.7 39 87.2
Lalb_Chr20g0116571 Lupinus albus HOM05D004319 ORTHO05D005433 1.2e-10 69.7 40 82.5
Os05g0104800 Oryza sativa ssp. japonica HOM05D004319 ORTHO05D005433 1.2e-10 69.7 40 77.5
SGA_v2.0_scaffold44G16706 Striga asiatica HOM05D004319 ORTHO05D005433 1.2e-10 69.7 40 85.0
Ca_17153_v3 Cicer arietinum L. HOM05D004319 ORTHO05D005433 1.6e-10 69.3 40 80.0
CDE02G2318 Ceratophyllum demersum HOM05D004319 ORTHO05D005433 2.0e-10 68.9 37 89.2
Eucgr.B01698 Eucalyptus grandis HOM05D004319 ORTHO05D005433 2.0e-10 68.9 40 85.0
Eucgr.B02106 Eucalyptus grandis HOM05D004319 ORTHO05D005433 2.0e-10 68.9 40 85.0
Lj6g0024956 Lotus japonicus HOM05D004319 ORTHO05D005433 2.0e-10 68.9 40 80.0
TPR.G16290 Trifolium pratense HOM05D004319 ORTHO05D005433 2.0e-10 68.9 40 82.5
TWI53G0350 Tripterygium wilfordii HOM05D004319 ORTHO05D005433 2.0e-10 68.9 40 82.5
Glyma.18G029500 Glycine max HOM05D004319 ORTHO05D005433 2.7e-10 68.6 40 77.5
Lalb_Chr15g0084221 Lupinus albus HOM05D004319 ORTHO05D005433 2.7e-10 68.6 40 80.0
Phvul.001G241100 Phaseolus vulgaris HOM05D004319 ORTHO05D005433 2.7e-10 68.6 40 77.5
PGR044G0899 Punica granatum HOM05D004319 ORTHO05D005433 2.7e-10 68.6 40 85.0
VMungo1383G3192 Vigna mungo HOM05D004319 ORTHO05D005433 2.7e-10 68.6 40 77.5
EL10Ac7g16137 Beta vulgaris HOM05D004319 ORTHO05D005433 3.5e-10 68.2 43 69.8
Carub.0004s2213 Capsella rubella HOM05D004319 ORTHO05D005433 3.5e-10 68.2 40 80.0
EL10Ac7g16132 Beta vulgaris HOM05D004319 ORTHO05D005433 4.5e-10 67.8 40 72.5
BcaB02g09062 Brassica carinata HOM05D004319 ORTHO05D005433 4.5e-10 67.8 40 77.5
A05p06430 Brassica napus HOM05D004319 ORTHO05D005433 4.5e-10 67.8 40 77.5
Gohir.A10G233100 Gossypium hirsutum HOM05D004319 ORTHO05D005433 4.5e-10 67.8 40 82.5
BcaC01g05449 Brassica carinata HOM05D004319 ORTHO05D005433 5.9e-10 67.4 40 77.5
C03p26570 Brassica napus HOM05D004319 ORTHO05D005433 5.9e-10 67.4 40 77.5
BolC3t15043H Brassica oleracea HOM05D004319 ORTHO05D005433 5.9e-10 67.4 40 77.5
Migut.F00700 Erythranthe guttata HOM05D004319 ORTHO05D005433 5.9e-10 67.4 40 80.0
Thhalv10016933m.g Eutrema salsugineum HOM05D004319 ORTHO05D005433 5.9e-10 67.4 40 80.0
BraA05t19611Z Brassica rapa HOM05D004319 ORTHO05D005433 7.7e-10 67.0 40 75.0
THA.LOC104809927 Tarenaya hassleriana HOM05D004319 ORTHO05D005433 7.7e-10 67.0 40 77.5
THA.LOC104810078 Tarenaya hassleriana HOM05D004319 ORTHO05D005433 7.7e-10 67.0 40 80.0
Zm00001eb356180 Zea mays HOM05D004319 ORTHO05D005433 7.7e-10 67.0 40 75.0
BcaB01g03583 Brassica carinata HOM05D004319 ORTHO05D005433 1.0e-09 66.6 40 77.5
Glyma.11G227900 Glycine max HOM05D004319 ORTHO05D005433 1.0e-09 66.6 40 75.0
Ah.15g099780 Amaranthus hybridus HOM05D004319 ORTHO05D005433 1.3e-09 66.2 40 72.5
C04p07500 Brassica napus HOM05D004319 ORTHO05D005433 1.3e-09 66.2 40 75.0
BolC4t22368H Brassica oleracea HOM05D004319 ORTHO05D005433 1.3e-09 66.2 40 75.0
AUR62001677 Chenopodium quinoa HOM05D004319 ORTHO05D005433 1.3e-09 66.2 40 72.5
AUR62020103 Chenopodium quinoa HOM05D004319 ORTHO05D005433 1.3e-09 66.2 40 72.5
Manes.07G126500 Manihot esculenta HOM05D004319 ORTHO05D005433 1.3e-09 66.2 36 86.1
Sp4g22300 Schrenkiella parvula HOM05D004319 ORTHO05D005433 1.3e-09 66.2 40 77.5
Hund18856 Selenicereus undatus HOM05D004319 ORTHO05D005433 1.3e-09 66.2 40 72.5
A03p22410 Brassica napus HOM05D004319 ORTHO05D005433 1.7e-09 65.9 40 75.0
BraA03t11469Z Brassica rapa HOM05D004319 ORTHO05D005433 1.7e-09 65.9 40 75.0
Ciclev10032098m.g Citrus clementina HOM05D004319 ORTHO05D005433 1.7e-09 65.9 40 77.5
AL4G37580 Arabidopsis lyrata HOM05D004319 ORTHO05D005433 2.2e-09 65.5 40 77.5
AL624U10010 Arabidopsis lyrata HOM05D004319 ORTHO05D005433 2.2e-09 65.5 40 77.5
Medtr5g082000 Medicago truncatula HOM05D004319 ORTHO05D005433 2.2e-09 65.5 40 77.5
Aa31LG5G19620 Aethionema arabicum HOM05D004319 ORTHO05D005433 3.8e-09 64.7 40 77.5
CARHR134940 Cardamine hirsuta HOM05D004319 ORTHO05D005433 3.8e-09 64.7 40 75.0
Psat2g034600 Pisum sativum HOM05D004319 ORTHO05D005433 3.8e-09 64.7 40 77.5
TPR.G19852 Trifolium pratense HOM05D004319 ORTHO05D005433 3.8e-09 64.7 40 77.5
HPP92_018195 Vanilla planifolia HOM05D004319 ORTHO05D005433 3.8e-09 64.7 40 75.0
Zm00001eb267470 Zea mays HOM05D004319 ORTHO05D005433 5.0e-09 64.3 40 72.5
Glyma.02G254900 Glycine max HOM05D004319 ORTHO05D005433 6.5e-09 63.9 40 75.0
Glyma.14G061600 Glycine max HOM05D004319 ORTHO05D005433 8.5e-09 63.5 40 75.0
Sc12g0000910 Simmondsia chinensis HOM05D004319 ORTHO05D005433 8.5e-09 63.5 40 70.0
Ca_05939_v3 Cicer arietinum L. HOM05D004319 ORTHO05D005433 1.1e-08 63.2 40 75.0
SMO358G0553 Selaginella moellendorffii HOM05D004319 ORTHO05D005433 1.1e-08 63.2 40 72.5
Potri.008G065500 Populus trichocarpa HOM05D004319 ORTHO05D005433 1.5e-08 62.8 41 73.2
Medtr5g082010 Medicago truncatula HOM05D004319 ORTHO05D035081 3.2e-08 61.6 47 59.6
Pp3c7_5560 Physcomitrium patens HOM05D004319 ORTHO05D005433 7.2e-08 60.5 40 67.5
Pp3c11_20930 Physcomitrium patens HOM05D004319 ORTHO05D005433 1.2e-07 59.7 40 65.0
Mapoly0084s0049 Marchantia polymorpha HOM05D004319 ORTHO05D005433 1.6e-07 59.3 40 65.0
CBR_g51981 Chara braunii HOM05D004319 ORTHO05D005433 2.1e-07 58.9 40 65.0
Haze_17192 Corylus avellana HOM05D004319 ORTHO05D005433 2.1e-07 58.9 31 93.5
AagrBONN_evm.TU.Sc2ySwM_117.2489 Anthoceros agrestis HOM05D004319 ORTHO05D005433 3.6e-07 58.2 40 70.0
COL.COLO4_31614 Corchorus olitorius HOM05D004319 ORTHO05D005433 2.3e-06 55.5 40 65.0


User provided reference genes

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