Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv13351 Davidia involucrata HOM05D003546 ORTHO05D005667 8.5e-76 287.0 149 100.0
TAR629G0142 Trochodendron aralioides HOM05D003546 ORTHO05D005667 1.3e-39 166.8 93 87.1
Hma1.2p1_0713F.1_g207830 Hydrangea macrophylla HOM05D003546 ORTHO05D005667 8.3e-39 164.1 93 87.1
Sed0005020 Sechium edule HOM05D003546 ORTHO05D005667 1.4e-38 163.3 114 73.7
Dinv26695 Davidia involucrata HOM05D003546 ORTHO05D005667 4.1e-38 161.8 93 86.0
Prupe.4G154400 Prunus persica HOM05D003546 ORTHO05D005667 4.1e-38 161.8 93 84.9
Lalb_Chr25g0285581 Lupinus albus HOM05D003546 ORTHO05D005667 5.4e-38 161.4 93 86.0
Nn3g20902 Nelumbo nucifera HOM05D003546 ORTHO05D005667 7.1e-38 161.0 93 86.0
Nitab4.5_0001140g0050 Nicotiana tabacum HOM05D003546 ORTHO05D005667 9.2e-38 160.6 93 83.9
Actinidia12611 Actinidia chinensis HOM05D003546 ORTHO05D005667 1.2e-37 160.2 116 73.3
CiPaw.11G154600 Carya illinoinensis HOM05D003546 ORTHO05D005667 1.2e-37 160.2 95 83.2
Nitab4.5_0003618g0070 Nicotiana tabacum HOM05D003546 ORTHO05D005667 2.1e-37 159.5 93 83.9
Rhsim06G0212800 Rhododendron simsii HOM05D003546 ORTHO05D005667 2.1e-37 159.5 93 80.6
Sc03g0010770 Simmondsia chinensis HOM05D003546 ORTHO05D005667 2.1e-37 159.5 93 83.9
Rhsim06G0213200 Rhododendron simsii HOM05D003546 ORTHO05D005667 4.6e-37 158.3 95 78.9
MSTRG.6697 Avicennia marina HOM05D003546 ORTHO05D005667 7.8e-37 157.5 121 71.1
Lsat_1_v5_gn_7_100340 Lactuca sativa HOM05D003546 ORTHO05D005667 1.3e-36 156.8 93 79.6
PSO541G1993 Papaver somniferum HOM05D003546 ORTHO05D005667 1.3e-36 156.8 95 77.9
QL08p024489 Quercus lobata HOM05D003546 ORTHO05D005667 1.7e-36 156.4 103 77.7
Aqoxy1G01847 Aquilegia oxysepala HOM05D003546 ORTHO05D005667 3.0e-36 155.6 116 70.7
FvH4_3g17420 Fragaria vesca HOM05D003546 ORTHO05D005667 3.0e-36 155.6 93 78.5
FAN11G2746 Fragaria x ananassa HOM05D003546 ORTHO05D005667 3.0e-36 155.6 93 78.5
FAN16G1735 Fragaria x ananassa HOM05D003546 ORTHO05D005667 3.0e-36 155.6 93 78.5
Migut.G00787 Erythranthe guttata HOM05D003546 ORTHO05D005667 3.9e-36 155.2 103 77.7
MELO3C016138.2 Cucumis melo HOM05D003546 ORTHO05D005667 5.1e-36 154.8 93 82.8
CsaV3_4G007980 Cucumis sativus L. HOM05D003546 ORTHO05D005667 5.1e-36 154.8 93 82.8
ClCG07G010350 Citrullus lanatus HOM05D003546 ORTHO05D005667 6.6e-36 154.5 93 82.8
TAR627G0069 Trochodendron aralioides HOM05D003546 ORTHO05D005667 6.6e-36 154.5 163 58.9
Ah.06g187600 Amaranthus hybridus HOM05D000137 ORTHO05D000503 8.6e-36 154.1 93 79.6
FAN21G0932 Fragaria x ananassa HOM05D003546 ORTHO05D005667 8.6e-36 154.1 93 78.5
PSO675G0773 Papaver somniferum HOM05D003546 ORTHO05D005667 8.6e-36 154.1 95 76.8
Sed0015060 Sechium edule HOM05D003546 ORTHO05D005667 8.6e-36 154.1 93 80.6
Peaxi162Scf00111g01221 Petunia axillaris HOM05D003546 ORTHO05D005667 1.1e-35 153.7 103 76.7
MD11G1273100 Malus domestica HOM05D003546 ORTHO05D005667 1.5e-35 153.3 93 80.6
RcHm_v2.0_Chr5g0028951 Rosa chinensis HOM05D003546 ORTHO05D005667 1.5e-35 153.3 93 79.6
SGA_v2.0_scaffold73G24377 Striga asiatica HOM05D003546 ORTHO05D005667 1.9e-35 152.9 93 79.6
vmacro11984 Vaccinium macrocarpon HOM05D003546 ORTHO05D005667 1.9e-35 152.9 93 77.4
Haze_08456 Corylus avellana HOM05D003546 ORTHO05D005667 2.5e-35 152.5 93 80.6
Hund10394 Selenicereus undatus HOM05D003546 ORTHO05D005667 4.3e-35 151.8 93 79.6
CANSAT56G3227 Cannabis sativa HOM05D003546 ORTHO05D005667 5.6e-35 151.4 93 80.6
Cfa019500 Carpinus fangiana HOM05D003546 ORTHO05D005667 7.3e-35 151.0 93 79.6
Oeu058446.1 Olea europaea HOM05D003546 ORTHO05D005667 7.3e-35 151.0 103 73.8
CAN.G375.59 Capsicum annuum HOM05D003546 ORTHO05D005667 6.2e-34 147.9 93 79.6
PGSC0003DMG400007057 Solanum tuberosum HOM05D003546 ORTHO05D005667 6.2e-34 147.9 93 78.5
Sabra11G0100300 Salix brachista HOM05D003546 ORTHO05D005667 1.1e-33 147.1 108 70.4
Eucgr.F03224 Eucalyptus grandis HOM05D003546 ORTHO05D005667 1.4e-33 146.7 95 75.8
SalBow8G3953 Salvia bowleyana HOM05D003546 ORTHO05D005667 1.4e-33 146.7 106 69.8
Solyc07g062070.3 Solanum lycopersicum HOM05D003546 ORTHO05D005667 1.4e-33 146.7 93 77.4
Sopen07g030330 Solanum pennellii HOM05D003546 ORTHO05D005667 1.4e-33 146.7 93 77.4
unitig_37.g12553 Utricularia gibba HOM05D003546 ORTHO05D005667 1.4e-33 146.7 121 66.9
AUR62013937 Chenopodium quinoa HOM05D003546 ORTHO05D005667 1.8e-33 146.4 93 74.2
Oeu010039.1 Olea europaea HOM05D003546 ORTHO05D005667 1.8e-33 146.4 121 63.6
DCAR_021047 Daucus carota HOM05D003546 ORTHO05D005667 2.4e-33 146.0 93 79.6
AUR62019676 Chenopodium quinoa HOM05D003546 ORTHO05D005667 3.1e-33 145.6 105 67.6
Potri.011G114100 Populus trichocarpa HOM05D003546 ORTHO05D005667 4.0e-33 145.2 93 76.3
AT1G17160 Arabidopsis thaliana HOM05D003546 ORTHO05D005667 5.2e-33 144.8 96 75.0
AL1G29390 Arabidopsis lyrata HOM05D003546 ORTHO05D005667 8.9e-33 144.1 95 74.7
Carub.0001s1691 Capsella rubella HOM05D003546 ORTHO05D005667 1.2e-32 143.7 96 75.0
Thhalv10007918m.g Eutrema salsugineum HOM05D003546 ORTHO05D005667 1.5e-32 143.3 96 74.0
CARHR017740 Cardamine hirsuta HOM05D003546 ORTHO05D005667 2.0e-32 142.9 95 74.7
Medtr2g072830 Medicago truncatula HOM05D003546 ORTHO05D005667 3.4e-32 142.1 95 72.6
Manes.15G101700 Manihot esculenta HOM05D003546 ORTHO05D005667 4.4e-32 141.7 93 76.3
TWI38G2125 Tripterygium wilfordii HOM05D003546 ORTHO05D005667 4.4e-32 141.7 93 75.3
Thecc.07G148500 Theobroma cacao HOM05D003546 ORTHO05D005667 5.8e-32 141.4 109 67.9
Ciclev10020632m.g Citrus clementina HOM05D003546 ORTHO05D005667 7.6e-32 141.0 95 74.7
arahy.Tifrunner.gnm1.ann1.T44SL9 Arachis hypogaea HOM05D003546 ORTHO05D005667 9.9e-32 140.6 94 72.3
arahy.Tifrunner.gnm1.ann1.Y31H1M Arachis hypogaea HOM05D003546 ORTHO05D005667 9.9e-32 140.6 94 72.3
Sp1g15310 Schrenkiella parvula HOM05D003546 ORTHO05D005667 9.9e-32 140.6 101 71.3
Lj8A144T67 Lonicera japonica HOM05D003546 ORTHO05D005667 1.3e-31 140.2 94 75.5
Aa31LG7G2010 Aethionema arabicum HOM05D003546 ORTHO05D005667 2.2e-31 139.4 98 71.4
Cpa.g.sc77.106 Carica papaya HOM05D003546 ORTHO05D005667 3.8e-31 138.7 94 72.3
Duzib213G0800 Durio zibethinus HOM05D003546 ORTHO05D005667 6.4e-31 137.9 109 66.1
Ca_03453_v3 Cicer arietinum L. HOM05D003546 ORTHO05D005667 1.1e-30 137.1 93 72.0
THA.LOC104812287 Tarenaya hassleriana HOM05D003546 ORTHO05D005667 1.4e-30 136.7 93 75.3
COL.COLO4_17394 Corchorus olitorius HOM05D003546 ORTHO05D005667 1.9e-30 136.3 109 67.0
TPR.G27299 Trifolium pratense HOM05D003546 ORTHO05D005667 1.9e-30 136.3 93 71.0
Gohir.A08G234000 Gossypium hirsutum HOM05D003546 ORTHO05D005667 2.4e-30 136.0 111 65.8
Gohir.D08G254200 Gossypium hirsutum HOM05D003546 ORTHO05D005667 2.4e-30 136.0 111 66.7
Gorai.004G271100 Gossypium raimondii HOM05D003546 ORTHO05D005667 2.4e-30 136.0 111 65.8
arahy.Tifrunner.gnm1.ann1.UIE2A5 Arachis hypogaea HOM05D003546 ORTHO05D005667 4.1e-30 135.2 96 69.8
Glyma.15G240800 Glycine max HOM05D003546 ORTHO05D005667 4.1e-30 135.2 93 68.8
HanXRQChr15g0495341 Helianthus annuus HOM05D003546 ORTHO05D005667 7.1e-30 134.4 115 62.6
BcaC07g41403 Brassica carinata HOM05D003546 ORTHO05D005667 9.2e-30 134.0 95 70.5
HPP92_024629 Vanilla planifolia HOM05D003546 ORTHO05D005667 9.2e-30 134.0 102 65.7
BcaB07g34045 Brassica carinata HOM05D003546 ORTHO05D005667 2.7e-29 132.5 101 66.3
Aqoxy4G00144 Aquilegia oxysepala HOM05D003546 ORTHO05D005667 1.3e-28 130.2 116 62.9
Glyma.13G263300 Glycine max HOM05D003546 ORTHO05D005667 1.3e-28 130.2 93 67.7
Psat1g007800 Pisum sativum HOM05D003546 ORTHO05D005667 1.3e-28 130.2 93 68.8
CDE02G3780 Ceratophyllum demersum HOM05D003546 ORTHO05D005667 2.3e-28 129.4 92 69.6
THA.LOC104813974 Tarenaya hassleriana HOM05D003546 ORTHO05D005667 3.0e-28 129.0 93 71.0
ATR0256G001 Amborella trichopoda HOM05D003546 ORTHO05D005667 6.6e-28 127.9 94 68.1
Atru.chr2.1822 Acer truncatum HOM05D003546 ORTHO05D005667 8.7e-28 127.5 94 71.3
PGR031G2804 Punica granatum HOM05D003546 ORTHO05D005667 3.3e-27 125.6 95 66.3
ECA236G3331 Erigeron canadensis HOM05D003546 ORTHO05D005667 5.6e-27 124.8 117 62.4
CSS0041975 Camellia sinensis var. sinensis HOM05D003546 ORTHO05D005667 9.6e-27 124.0 77 79.2
Glyma.13G263400 Glycine max HOM05D003546 ORTHO05D005667 1.2e-26 123.6 93 62.4
Lj3g0000931 Lotus japonicus HOM05D003546 ORTHO05D005667 3.6e-26 122.1 93 66.7
VMungo1080G1435 Vigna mungo HOM05D003546 ORTHO05D005667 4.7e-26 121.7 103 60.2
SHI19235 Sapria himalayana HOM05D003546 ORTHO05D005667 1.8e-25 119.8 92 66.3
A06p13070 Brassica napus HOM05D003546 ORTHO05D005667 5.2e-25 118.2 98 62.2
BraA06t24467Z Brassica rapa HOM05D003546 ORTHO05D005667 5.2e-25 118.2 98 62.2
Phvul.005G070000 Phaseolus vulgaris HOM05D003546 ORTHO05D005667 1.5e-24 116.7 93 62.4
C05p15580 Brassica napus HOM05D003546 ORTHO05D005667 4.4e-24 115.2 98 61.2
BcaC05g25661 Brassica carinata HOM05D003546 ORTHO05D005667 5.8e-24 114.8 98 60.2
Phvul.005G070200 Phaseolus vulgaris HOM05D003546 ORTHO05D005667 9.9e-24 114.0 93 61.3
BolC5t30265H Brassica oleracea HOM05D003546 ORTHO05D005667 2.9e-23 112.5 123 53.7
VMungo1080G0318 Vigna mungo HOM05D003546 ORTHO05D005667 5.4e-22 108.2 93 60.2
Pp3c6_13210 Physcomitrium patens HOM05D003546 ORTHO05D005667 7.1e-22 107.8 116 52.6
Os01g0665400 Oryza sativa ssp. japonica HOM05D003546 ORTHO05D005667 1.7e-20 103.2 93 55.9
Zm00001eb359730 Zea mays HOM05D003546 ORTHO05D005667 2.3e-20 102.8 93 55.9
Pp3c5_14610 Physcomitrium patens HOM05D000518 ORTHO05D005667 6.6e-20 101.3 116 50.0
AagrBONN_evm.TU.Sc2ySwM_344.5210 Anthoceros agrestis HOM05D003546 ORTHO05D005667 2.5e-19 99.4 103 54.4
Mapoly0014s0091 Marchantia polymorpha HOM05D003546 ORTHO05D005667 3.3e-19 99.0 99 53.5
SMO119G0495 Selaginella moellendorffii HOM05D003546 ORTHO05D005667 5.6e-19 98.2 103 52.4
RcHm_v2.0_Chr5g0028931 Rosa chinensis HOM05D003546 ORTHO05D005667 3.1e-17 92.4 55 80.0
A01p26360 Brassica napus HOM05D003546 ORTHO05D014122 9.0e-17 90.9 55 78.2
BraA01t02562Z Brassica rapa HOM05D003546 ORTHO05D014122 4.5e-16 88.6 55 76.4
SMO163G0088 Selaginella moellendorffii HOM05D003546 ORTHO05D005667 2.2e-15 86.3 89 53.9
BolC8t52242H Brassica oleracea HOM05D003546 ORTHO05D014122 4.9e-15 85.1 55 72.7
C04p52320 Brassica napus HOM05D003546 ORTHO05D014122 6.4e-15 84.7 55 74.5
C05p52660 Brassica napus HOM05D003546 ORTHO05D014122 1.4e-14 83.6 55 72.7
BolC4t26808H Brassica oleracea HOM05D003546 ORTHO05D014122 1.4e-14 83.6 55 72.7
A08p37500 Brassica napus HOM05D003546 ORTHO05D014122 3.2e-14 82.4 55 70.9
BcaC02g08582 Brassica carinata HOM05D003546 ORTHO05D014122 4.2e-14 82.0 57 68.4
BcaC02g08580 Brassica carinata HOM05D003546 ORTHO05D014122 7.1e-14 81.3 55 70.9
BcaC08g43888 Brassica carinata HOM05D003546 ORTHO05D031910 1.2e-13 80.5 55 69.1
C02p16530 Brassica napus HOM05D003546 ORTHO05D005667 1.2e-13 80.5 53 73.6
C06p12730 Brassica napus HOM05D003546 ORTHO05D031910 1.2e-13 80.5 55 69.1
BolC6t36430H Brassica oleracea HOM05D003546 ORTHO05D031910 1.2e-13 80.5 55 69.1
CBR_g61469 Chara braunii HOM05D003546 ORTHO05D005667 1.6e-13 80.1 113 42.5
BcaC01g00338 Brassica carinata HOM05D003546 ORTHO05D005667 2.1e-13 79.7 55 69.1
SMO111G0185 Selaginella moellendorffii HOM05D002451 ORTHO05D005601 2.1e-13 79.7 118 44.1
C02p18050 Brassica napus HOM05D003546 ORTHO05D005667 3.5e-13 79.0 73 57.5
BcaC03g14396 Brassica carinata HOM05D003546 ORTHO05D005667 4.6e-13 78.6 73 57.5
BolC2t07938H Brassica oleracea HOM05D003546 ORTHO05D005667 4.6e-13 78.6 73 57.5
Cre10.g424500 Chlamydomonas reinhardtii HOM05D003546 ORTHO05D005667 6.0e-13 78.2 105 46.7
BolC2t07734H Brassica oleracea HOM05D003546 ORTHO05D005667 1.3e-12 77.0 48 77.1
C03p78600 Brassica napus HOM05D003546 ORTHO05D005667 2.3e-12 76.3 57 68.4
C02p16330 Brassica napus HOM05D003546 ORTHO05D005667 2.5e-11 72.8 49 71.4
C01p42230 Brassica napus HOM05D003546 ORTHO05D014122 1.1e-09 67.4 61 54.1
C08p08990 Brassica napus HOM05D003546 ORTHO05D040745 1.1e-09 67.4 56 58.9
BcaC03g14253 Brassica carinata HOM05D003546 ORTHO05D005667 1.4e-09 67.0 47 66.0
BcaC09g49138 Brassica carinata HOM05D003546 ORTHO05D014122 1.8e-09 66.6 57 56.1
BolC8t47744H Brassica oleracea HOM05D003546 ORTHO05D040745 3.1e-09 65.9 49 63.3
GSVIVG01014076001 Vitis vinifera HOM05D003546 ORTHO05D005667 3.1e-09 65.9 35 85.7
Cc05_g10570 Coffea canephora HOM05D003546 ORTHO05D005667 9.0e-09 64.3 51 66.7
A09p60550 Brassica napus HOM05D003546 ORTHO05D005667 4.5e-08 62.0 37 73.0
BraA09t41425Z Brassica rapa HOM05D003546 ORTHO05D005667 4.5e-08 62.0 37 73.0
BcaC02g08004 Brassica carinata HOM05D003546 ORTHO05D027045 5.8e-08 61.6 96 40.6
MCO15G239 Micromonas commoda HOM05D003546 ORTHO05D005667 2.9e-07 59.3 122 32.0
C04p59530 Brassica napus HOM05D003546 ORTHO05D027045 3.2e-06 55.8 128 35.9
BolC4t27459H Brassica oleracea HOM05D003546 ORTHO05D027045 3.2e-06 55.8 128 35.9
BcaB01g00957 Brassica carinata HOM05D003546 ORTHO05D014122 4.2e-06 55.5 37 64.9
C07p60450 Brassica napus HOM05D003546 ORTHO05D027045 5.5e-06 55.1 136 34.6
BcaB08g35084 Brassica carinata HOM05D003546 ORTHO05D005667 7.1e-06 54.7 46 60.9


User provided reference genes

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