Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv12567 Davidia involucrata HOM05D004020 ORTHO05D004735 0.0e+00 1421.4 729 100.0
CSS0033419 Camellia sinensis var. sinensis HOM05D004020 ORTHO05D004735 7.7e-279 963.8 1003 58.2
Actinidia07194 Actinidia chinensis HOM05D004020 ORTHO05D004735 1.2e-263 913.3 1003 56.2
TAR633G0695 Trochodendron aralioides HOM05D004020 ORTHO05D004735 2.1e-260 902.5 1010 54.3
Actinidia24157 Actinidia chinensis HOM05D004020 ORTHO05D004735 2.7e-260 902.1 999 55.8
Rhsim13G0102300 Rhododendron simsii HOM05D004020 ORTHO05D004735 1.6e-255 886.3 1030 54.1
Cfa010130 Carpinus fangiana HOM05D004020 ORTHO05D004735 9.1e-248 860.5 990 52.8
CiPaw.14G105600 Carya illinoinensis HOM05D004020 ORTHO05D004735 1.1e-240 837.0 988 52.3
MD11G1151500 Malus domestica HOM05D004020 ORTHO05D004735 5.0e-238 828.2 995 52.4
Prupe.6G114700 Prunus persica HOM05D004020 ORTHO05D004735 5.0e-238 828.2 987 52.8
MD03G1129700 Malus domestica HOM05D004020 ORTHO05D004735 2.6e-234 815.8 980 52.2
Duzib150G0506 Durio zibethinus HOM05D004020 ORTHO05D004735 3.7e-233 812.0 928 53.6
vmacro03245 Vaccinium macrocarpon HOM05D004020 ORTHO05D004735 6.4e-233 811.2 1035 50.6
Manes.11G154000 Manihot esculenta HOM05D004020 ORTHO05D004735 8.3e-233 810.8 987 51.8
Nn2g13902 Nelumbo nucifera HOM05D004020 ORTHO05D004735 2.4e-232 809.3 991 51.7
Sopen11g026290 Solanum pennellii HOM05D004020 ORTHO05D004735 1.2e-231 807.0 968 52.8
Cc01_g10110 Coffea canephora HOM05D004020 ORTHO05D004735 6.6e-230 801.2 958 52.1
Thecc.09G295800 Theobroma cacao HOM05D004020 ORTHO05D004735 6.6e-230 801.2 965 51.7
Atru.chr3.3492 Acer truncatum HOM05D004020 ORTHO05D004735 8.6e-230 800.8 997 50.2
RcHm_v2.0_Chr5g0056331 Rosa chinensis HOM05D004020 ORTHO05D004735 9.5e-229 797.3 990 51.5
Sabra04G0148500 Salix brachista HOM05D004020 ORTHO05D004735 2.8e-228 795.8 968 52.3
Duzib168G0446 Durio zibethinus HOM05D004020 ORTHO05D004735 1.2e-226 790.4 965 50.8
Potri.001G212600 Populus trichocarpa HOM05D004020 ORTHO05D004735 2.0e-226 789.6 969 52.1
Ciclev10027713m.g Citrus clementina HOM05D004020 ORTHO05D004735 2.6e-226 789.3 997 51.0
CAN.G644.49 Capsicum annuum HOM05D004020 ORTHO05D004735 5.8e-226 788.1 974 51.7
Nitab4.5_0000173g0340 Nicotiana tabacum HOM05D004020 ORTHO05D004735 2.2e-225 786.2 990 50.7
FvH4_3g30380 Fragaria vesca HOM05D004020 ORTHO05D004735 6.4e-225 784.6 996 50.9
TWI75G0197 Tripterygium wilfordii HOM05D004020 ORTHO05D004735 3.2e-224 782.3 1008 50.4
Aqoxy2G01562 Aquilegia oxysepala HOM05D004020 ORTHO05D004735 2.7e-223 779.2 958 50.9
FAN21G0469 Fragaria x ananassa HOM05D004020 ORTHO05D004735 4.6e-223 778.5 996 50.5
Glyma.11G191100 Glycine max HOM05D004020 ORTHO05D004735 7.8e-223 777.7 985 50.4
GSVIVG01031444001 Vitis vinifera HOM05D004020 ORTHO05D004735 1.0e-222 777.3 936 52.5
Gorai.009G089000 Gossypium raimondii HOM05D004020 ORTHO05D004735 1.7e-222 776.5 961 50.6
FAN11G1674 Fragaria x ananassa HOM05D004020 ORTHO05D004735 5.1e-222 775.0 1006 50.3
Glyma.12G083200 Glycine max HOM05D004020 ORTHO05D004735 1.5e-221 773.5 990 50.4
PSO339G0247 Papaver somniferum HOM05D004020 ORTHO05D004735 1.9e-221 773.1 957 49.8
Lj3g0000902 Lotus japonicus HOM05D004020 ORTHO05D004735 4.3e-221 771.9 992 50.1
Eucgr.B03912 Eucalyptus grandis HOM05D004020 ORTHO05D004735 1.2e-220 770.4 972 50.3
CsaV3_1G014440 Cucumis sativus L. HOM05D004020 ORTHO05D004735 2.1e-220 769.6 956 50.4
Potri.009G002900 Populus trichocarpa HOM05D004020 ORTHO05D004735 2.8e-220 769.2 971 50.9
Migut.D02305 Erythranthe guttata HOM05D004020 ORTHO05D004735 4.0e-219 765.4 1000 50.0
Sc06g0008980 Simmondsia chinensis HOM05D004020 ORTHO05D004735 6.8e-219 764.6 1005 49.0
PSO801G0568 Papaver somniferum HOM05D004020 ORTHO05D004735 2.6e-218 762.7 957 49.8
MELO3C004814.2 Cucumis melo HOM05D004020 ORTHO05D004735 5.8e-218 761.5 956 50.1
Lalb_Chr01g0004661 Lupinus albus HOM05D004020 ORTHO05D004735 2.9e-217 759.2 979 49.3
COL.COLO4_19229 Corchorus olitorius HOM05D004020 ORTHO05D004735 3.7e-217 758.8 966 50.3
Ca_19329_v3 Cicer arietinum L. HOM05D004020 ORTHO05D004735 8.3e-217 757.7 985 49.6
MSTRG.18711 Avicennia marina HOM05D004020 ORTHO05D004735 2.4e-216 756.1 994 48.8
Gohir.D05G087200 Gossypium hirsutum HOM05D004020 ORTHO05D004735 5.4e-216 755.0 961 49.8
Oeu007301.5 Olea europaea HOM05D004020 ORTHO05D004735 7.8e-215 751.1 1150 45.7
Gohir.D07G110000 Gossypium hirsutum HOM05D004020 ORTHO05D004735 2.3e-214 749.6 960 49.4
Lsat_1_v5_gn_6_42101 Lactuca sativa HOM05D004020 ORTHO05D004735 2.3e-214 749.6 979 49.3
Gohir.A05G084400 Gossypium hirsutum HOM05D004020 ORTHO05D004735 8.6e-214 747.7 969 49.3
Sed0021294 Sechium edule HOM05D004020 ORTHO05D004735 8.6e-214 747.7 957 49.4
TPR.G35043 Trifolium pratense HOM05D004020 ORTHO05D004735 1.9e-213 746.5 984 48.1
HanXRQChr14g0451831 Helianthus annuus HOM05D004020 ORTHO05D004735 2.1e-212 743.0 949 50.3
Psat7g191400 Pisum sativum HOM05D004020 ORTHO05D004735 1.4e-211 740.3 984 48.9
Medtr4g056510 Medicago truncatula HOM05D004020 ORTHO05D004735 1.8e-211 740.0 981 48.9
Phvul.011G088000 Phaseolus vulgaris HOM05D004020 ORTHO05D004735 1.5e-210 736.9 979 48.4
Lalb_Chr19g0136831 Lupinus albus HOM05D004020 ORTHO05D004735 3.8e-209 732.3 982 47.6
PGR102G0426 Punica granatum HOM05D004020 ORTHO05D004735 4.9e-209 731.9 961 49.0
ECA238G2607 Erigeron canadensis HOM05D004020 ORTHO05D004735 6.0e-207 724.9 927 50.2
HanXRQChr02g0055251 Helianthus annuus HOM05D004020 ORTHO05D004735 1.3e-206 723.8 975 48.1
EL10Ac9g20998 Beta vulgaris HOM05D004020 ORTHO05D004735 9.6e-205 717.6 1021 46.3
THA.LOC104800567 Tarenaya hassleriana HOM05D004020 ORTHO05D004735 6.9e-203 711.4 992 46.8
DCAR_031639 Daucus carota HOM05D004020 ORTHO05D004735 2.0e-202 709.9 936 49.6
THA.LOC104826398 Tarenaya hassleriana HOM05D004020 ORTHO05D004735 1.1e-200 704.1 986 47.0
Aa31LG5G8160 Aethionema arabicum HOM05D004020 ORTHO05D004735 1.6e-199 700.3 986 47.1
AL4G22350 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 5.1e-198 695.3 983 46.8
Carub.0004s0864 Capsella rubella HOM05D004020 ORTHO05D004735 3.6e-196 689.1 991 46.0
AT2G27900 Arabidopsis thaliana HOM05D004020 ORTHO05D004735 9.0e-195 684.5 985 46.1
ClCG01G012850 Citrullus lanatus HOM05D004020 ORTHO05D004735 9.9e-194 681.0 934 48.5
BcaB01g03084 Brassica carinata HOM05D004020 ORTHO05D004735 3.2e-192 676.0 975 46.1
Thhalv10016162m.g Eutrema salsugineum HOM05D004020 ORTHO05D004735 2.7e-191 672.9 984 45.2
CANSAT64G0934 Cannabis sativa HOM05D004020 ORTHO05D004735 3.0e-190 669.5 993 45.5
Sp4g10720 Schrenkiella parvula HOM05D004020 ORTHO05D004735 3.9e-190 669.1 989 45.4
CDE08G1223 Ceratophyllum demersum HOM05D004020 ORTHO05D004735 2.5e-189 666.4 943 46.2
BraA04t17688Z Brassica rapa HOM05D004020 ORTHO05D004735 3.3e-189 666.0 953 45.9
A03p26460 Brassica napus HOM05D004020 ORTHO05D004735 1.6e-188 663.7 981 45.2
BcaC01g04955 Brassica carinata HOM05D004020 ORTHO05D004735 1.1e-187 661.0 980 45.0
ATR1158G033 Amborella trichopoda HOM05D004020 ORTHO05D004735 1.4e-187 660.6 926 47.4
arahy.Tifrunner.gnm1.ann1.533Y7U Arachis hypogaea HOM05D004020 ORTHO05D004735 6.9e-187 658.3 987 44.5
C03p31750 Brassica napus HOM05D004020 ORTHO05D004735 2.6e-186 656.4 980 45.3
BolC3t15517H Brassica oleracea HOM05D004020 ORTHO05D004735 2.6e-186 656.4 981 45.0
A04p21190 Brassica napus HOM05D004020 ORTHO05D004735 3.4e-186 656.0 953 45.5
arahy.Tifrunner.gnm1.ann1.MMVL4X Arachis hypogaea HOM05D004020 ORTHO05D004735 4.9e-185 652.1 984 44.7
MBI18_g10967_MAGBIO Magnolia biondii HOM05D004020 ORTHO05D004735 1.4e-184 650.6 856 49.3
Peaxi162Scf00150g00916 Petunia axillaris HOM05D004020 ORTHO05D004735 2.1e-180 636.7 878 49.9
Hund00854 Selenicereus undatus HOM05D004020 ORTHO05D004735 2.6e-178 629.8 1022 43.4
Lsat_1_v5_gn_2_99000 Lactuca sativa HOM05D004020 ORTHO05D004735 7.6e-178 628.2 909 48.0
BolC4t27237H Brassica oleracea HOM05D004020 ORTHO05D004735 1.3e-177 627.5 952 44.7
BcaC02g08224 Brassica carinata HOM05D004020 ORTHO05D004735 3.2e-176 622.9 955 44.5
Os10g0546300 Oryza sativa ssp. japonica HOM05D004020 ORTHO05D004735 4.2e-176 622.5 909 43.5
BcaB06g28175 Brassica carinata HOM05D004020 ORTHO05D004735 2.7e-175 619.8 951 44.2
Zm00001eb022740 Zea mays HOM05D004020 ORTHO05D004735 6.1e-175 618.6 925 44.4
C04p57020 Brassica napus HOM05D004020 ORTHO05D004735 7.9e-175 618.2 954 44.3
arahy.Tifrunner.gnm1.ann1.B084HG Arachis hypogaea HOM05D004020 ORTHO05D004735 4.3e-165 585.9 773 48.6
arahy.Tifrunner.gnm1.ann1.PN7A9Z Arachis hypogaea HOM05D004020 ORTHO05D004735 2.0e-162 577.0 771 48.5
Lj2C1000T5 Lonicera japonica HOM05D004020 ORTHO05D004735 1.6e-154 550.8 761 47.7
SGA_v2.0_scaffold27G11582 Striga asiatica HOM05D004020 ORTHO05D004735 4.5e-154 549.3 1094 38.6
AUR62024038 Chenopodium quinoa HOM05D004020 ORTHO05D004735 3.7e-148 529.6 927 41.6
Hund07762 Selenicereus undatus HOM05D004020 ORTHO05D004735 3.7e-148 529.6 903 42.3
CARHR120590 Cardamine hirsuta HOM05D004020 ORTHO05D004735 1.0e-145 521.5 797 44.2
Oeu008367.3 Olea europaea HOM05D004020 ORTHO05D004735 1.1e-136 491.5 881 41.8
Lj2A1002G14 Lonicera japonica HOM05D004020 ORTHO05D004735 1.5e-128 464.5 333 73.9
AL4G12830 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 5.6e-128 462.6 857 40.6
AUR62041305 Chenopodium quinoa HOM05D004020 ORTHO05D004735 2.0e-125 454.1 922 38.3
Gorai.001G118200 Gossypium raimondii HOM05D004020 ORTHO05D004735 4.1e-123 446.4 421 61.5
Gohir.A07G106132 Gossypium hirsutum HOM05D004020 ORTHO05D004735 2.7e-122 443.7 421 61.0
Lj2A1002G13 Lonicera japonica HOM05D004020 ORTHO05D004735 4.4e-117 426.4 415 60.7
BraA03t11860Z Brassica rapa HOM05D004020 ORTHO05D004735 9.5e-112 408.7 500 52.0
AagrBONN_evm.TU.Sc2ySwM_340.402 Anthoceros agrestis HOM05D004020 ORTHO05D004735 9.5e-104 382.1 957 31.7
SMO118G0476 Selaginella moellendorffii HOM05D004020 ORTHO05D004735 2.1e-103 380.9 883 33.1
Gohir.A07G106066 Gossypium hirsutum HOM05D004020 ORTHO05D004735 1.5e-101 374.8 310 65.5
Mapoly0001s0255 Marchantia polymorpha HOM05D004020 ORTHO05D004735 2.8e-95 354.0 988 30.5
AagrBONN_evm.TU.Sc2ySwM_117.107 Anthoceros agrestis HOM05D004020 ORTHO05D004735 8.1e-95 352.4 837 31.9
Pp3c5_16860 Physcomitrium patens HOM05D004020 ORTHO05D004735 1.4e-94 351.7 971 31.0
SalBow6G5048 Salvia bowleyana HOM05D004020 ORTHO05D004735 1.4e-94 351.7 356 56.5
Ah.01g015940 Amaranthus hybridus HOM05D004020 ORTHO05D004735 1.2e-93 348.6 316 60.4
Haze_23514 Corylus avellana HOM05D004020 ORTHO05D004735 2.6e-93 347.4 603 41.5
HPP92_022569 Vanilla planifolia HOM05D004020 ORTHO05D004735 9.9e-93 345.5 309 61.5
Pp3c16_8720 Physcomitrium patens HOM05D004020 ORTHO05D004735 1.3e-92 345.1 968 30.4
unitig_746.g26602 Utricularia gibba HOM05D004020 ORTHO05D004735 1.1e-86 325.5 311 58.5
unitig_746.g26604 Utricularia gibba HOM05D004020 ORTHO05D004735 4.9e-76 290.0 334 51.8
Haze_23513 Corylus avellana HOM05D004020 ORTHO05D004735 3.5e-66 257.3 206 67.0
Cpa.g.sc47.20 Carica papaya HOM05D004020 ORTHO05D004735 7.4e-64 249.6 234 60.7
Cpa.g.sc47.22 Carica papaya HOM05D004020 ORTHO05D004735 2.2e-60 238.0 213 65.3
CBR_g49688 Chara braunii HOM05D004020 ORTHO05D004735 3.9e-57 227.3 317 41.0
Peaxi162Scf00150g00917 Petunia axillaris HOM05D004020 ORTHO05D004735 8.5e-36 156.4 87 87.4
SHI06178 Sapria himalayana HOM05D004020 ORTHO05D004735 3.6e-34 151.0 347 35.4
SEGI_08231 Sequoiadendron giganteum HOM05D004020 ORTHO05D004735 7.5e-32 143.3 234 44.4
FAN11G0203 Fragaria x ananassa HOM05D004020 ORTHO05D004735 1.7e-31 142.1 158 56.3
FAN21G0688 Fragaria x ananassa HOM05D004020 ORTHO05D004735 1.7e-31 142.1 158 56.3
arahy.Tifrunner.gnm1.ann1.FLM5Q5 Arachis hypogaea HOM05D004020 ORTHO05D004735 2.0e-29 135.2 88 69.3
AL580U10010 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 1.2e-26 125.9 149 52.3
TAR476G0003 Trochodendron aralioides HOM05D004020 ORTHO05D004735 2.7e-26 124.8 131 57.3
Haze_23512 Corylus avellana HOM05D004020 ORTHO05D004735 3.0e-25 121.3 156 50.0
Nitab4.5_0027393g0010 Nicotiana tabacum HOM05D004020 ORTHO05D004735 1.3e-23 115.9 113 62.8
MCO09G744 Micromonas commoda HOM05D004020 ORTHO05D004735 4.8e-23 114.0 806 21.7
Rhsim04G0218400 Rhododendron simsii HOM05D004020 ORTHO05D004735 6.3e-23 113.6 155 47.7
HPP92_022568 Vanilla planifolia HOM05D004020 ORTHO05D004735 6.3e-23 113.6 111 55.9
QL01p014670 Quercus lobata HOM05D004020 ORTHO05D004735 1.6e-21 109.0 68 75.0
MD01G1172900 Malus domestica HOM05D004020 ORTHO05D004735 1.1e-19 102.8 121 52.1
Cre10.g443350 Chlamydomonas reinhardtii HOM05D004020 ORTHO05D004735 1.9e-19 102.1 361 24.4
SHI06174 Sapria himalayana HOM05D004020 ORTHO05D004735 6.1e-18 97.1 95 56.8
SEGI_13700 Sequoiadendron giganteum HOM05D004020 ORTHO05D004735 1.0e-17 96.3 112 54.5
CANSAT64G1975 Cannabis sativa HOM05D004020 ORTHO05D004735 2.8e-15 88.2 45 84.4
arahy.Tifrunner.gnm1.ann1.LCV131 Arachis hypogaea HOM05D004020 ORTHO05D004735 4.9e-15 87.4 52 73.1
C06p19250 Brassica napus HOM05D004020 ORTHO05D004735 8.3e-15 86.7 61 63.9
C06p24240 Brassica napus HOM05D004020 ORTHO05D004735 5.9e-13 80.5 65 58.5
Lsat_1_v5_gn_8_150800 Lactuca sativa HOM05D003321 ORTHO05D033839 2.3e-12 78.6 46 84.8
Nitab4.5_0005230g0050 Nicotiana tabacum HOM05D004020 ORTHO05D004735 6.6e-12 77.0 93 53.8
Zm00001eb064060 Zea mays HOM05D002996 ORTHO05D003536 1.9e-11 75.5 115 43.5
Zm00001eb302500 Zea mays HOM05D004020 ORTHO05D004735 1.6e-10 72.4 138 41.3
FAN16G3550 Fragaria x ananassa HOM05D004020 ORTHO05D004735 4.7e-10 70.9 88 52.3
PRCOL_00006567 Prasinoderma coloniale HOM05D004020 ORTHO05D004735 1.4e-09 69.3 364 20.9
C03p65310 Brassica napus HOM05D004020 ORTHO05D004735 2.3e-09 68.6 67 50.7
Nitab4.5_0011593g0020 Nicotiana tabacum HOM05D004020 ORTHO05D004735 9.8e-08 63.2 52 67.3
SHI06177 Sapria himalayana HOM05D004020 ORTHO05D004735 2.2e-07 62.0 45 64.4
BcaC01g02437 Brassica carinata HOM05D004020 ORTHO05D004735 6.4e-07 60.5 45 60.0
SHI06176 Sapria himalayana HOM05D004020 ORTHO05D004735 6.4e-07 60.5 49 57.1
Zm00001eb218380 Zea mays HOM05D002996 ORTHO05D003536 1.4e-06 59.3 100 36.0


User provided reference genes

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