Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv11617 Davidia involucrata HOM05D006287 ORTHO05D008192 2.1e-145 520.8 513 100.0
CSS0042508 Camellia sinensis var. sinensis HOM05D006287 ORTHO05D008192 7.1e-69 266.5 509 48.1
Actinidia15687 Actinidia chinensis HOM05D006287 ORTHO05D008192 1.8e-64 251.9 238 57.1
CSS0048694 Camellia sinensis var. sinensis HOM05D006287 ORTHO05D008192 2.0e-63 248.4 234 56.0
Hma1.2p1_0007F.1_g005110 Hydrangea macrophylla HOM05D006287 ORTHO05D008192 1.1e-58 232.6 182 62.6
Haze_21571 Corylus avellana HOM05D006287 ORTHO05D008192 1.3e-49 202.6 211 52.6
Cc11_g01810 Coffea canephora HOM05D006287 ORTHO05D008192 1.9e-45 188.7 227 45.8
Lj7C718G17 Lonicera japonica HOM05D006287 ORTHO05D008192 3.6e-44 184.5 193 50.3
CiPaw.06G059600 Carya illinoinensis HOM05D006287 ORTHO05D008192 1.8e-43 182.2 208 51.9
QL08p000602 Quercus lobata HOM05D006287 ORTHO05D008192 1.8e-43 182.2 197 50.8
Oeu008766.1 Olea europaea HOM05D006287 ORTHO05D008192 8.8e-43 179.9 135 59.3
Oeu032501.2 Olea europaea HOM05D006287 ORTHO05D008192 4.8e-41 174.1 163 50.9
QL05p049822 Quercus lobata HOM05D006287 ORTHO05D008192 4.8e-41 174.1 202 49.0
GSVIVG01035807001 Vitis vinifera HOM05D006287 ORTHO05D008192 1.1e-40 172.9 186 52.2
CANSAT11G2472 Cannabis sativa HOM05D006287 ORTHO05D008192 3.1e-40 171.4 168 53.0
Prupe.6G275900 Prunus persica HOM05D006287 ORTHO05D008192 5.9e-39 167.2 203 46.3
Cpa.g.sc1.269 Carica papaya HOM05D006287 ORTHO05D008192 2.2e-38 165.2 169 50.9
Duzib168G0154 Durio zibethinus HOM05D006287 ORTHO05D008192 2.2e-38 165.2 233 44.2
COL.COLO4_23984 Corchorus olitorius HOM05D006287 ORTHO05D008192 6.5e-38 163.7 136 58.8
Nitab4.5_0001669g0010 Nicotiana tabacum HOM05D006287 ORTHO05D008192 3.2e-37 161.4 230 43.0
Thecc.09G149000 Theobroma cacao HOM05D006287 ORTHO05D008192 5.5e-37 160.6 121 65.3
MSTRG.25851 Avicennia marina HOM05D006287 ORTHO05D008192 1.6e-36 159.1 167 48.5
Duzib150G0458 Durio zibethinus HOM05D006287 ORTHO05D008192 1.4e-35 156.0 188 46.8
Sabra06G0196000 Salix brachista HOM05D001686 ORTHO05D008192 2.3e-35 155.2 193 46.1
Gorai.011G097400 Gossypium raimondii HOM05D006287 ORTHO05D008192 5.1e-35 154.1 235 42.1
Nn5g27729 Nelumbo nucifera HOM05D006287 ORTHO05D008192 1.5e-34 152.5 254 39.4
Potri.006G250700 Populus trichocarpa HOM05D006287 ORTHO05D008192 1.5e-34 152.5 203 43.8
TWI63G1321 Tripterygium wilfordii HOM05D006287 ORTHO05D008192 4.4e-34 151.0 134 56.0
DCAR_006447 Daucus carota HOM05D006287 ORTHO05D008192 5.7e-34 150.6 189 42.9
PGSC0003DMG400023145 Solanum tuberosum HOM05D006287 ORTHO05D008192 2.8e-33 148.3 230 38.3
RcHm_v2.0_Chr7g0216391 Rosa chinensis HOM05D006287 ORTHO05D008192 1.4e-32 146.0 165 48.5
Peaxi162Scf00341g00062 Petunia axillaris HOM05D006287 ORTHO05D008192 1.8e-32 145.6 229 38.0
Nitab4.5_0000151g0190 Nicotiana tabacum HOM05D006287 ORTHO05D008192 2.4e-32 145.2 179 43.0
Sopen08g021010 Solanum pennellii HOM05D006287 ORTHO05D008192 4.1e-32 144.4 230 39.1
Psat7g237040 Pisum sativum HOM05D006287 ORTHO05D008192 5.3e-32 144.1 132 49.2
Ciclev10010816m.g Citrus clementina HOM05D006287 ORTHO05D008192 9.1e-32 143.3 195 44.1
Atru.chr7.2375 Acer truncatum HOM05D006287 ORTHO05D008192 1.2e-31 142.9 233 40.8
Solyc08g067060.2 Solanum lycopersicum HOM05D006287 ORTHO05D008192 1.2e-31 142.9 230 38.7
arahy.Tifrunner.gnm1.ann1.VPFI8Q Arachis hypogaea HOM05D006287 ORTHO05D008192 5.9e-31 140.6 190 41.1
Ca_26550_v3 Cicer arietinum L. HOM05D006287 ORTHO05D008192 5.9e-31 140.6 122 54.1
CAN.G98.23 Capsicum annuum HOM05D006287 ORTHO05D008192 1.7e-30 139.0 125 52.8
VMungo0331G1641 Vigna mungo HOM05D006287 ORTHO05D008192 3.8e-30 137.9 194 44.3
PGR142G2973 Punica granatum HOM05D006287 ORTHO05D008192 1.4e-29 136.0 125 50.4
SGA_v2.0_scaffold22G09931 Striga asiatica HOM05D006287 ORTHO05D008192 1.9e-29 135.6 171 41.5
Lalb_Chr07g0185941 Lupinus albus HOM05D006287 ORTHO05D008192 4.2e-29 134.4 169 43.8
Phvul.009G090400 Phaseolus vulgaris HOM05D006287 ORTHO05D008192 5.5e-29 134.0 197 42.6
Eucgr.I01690 Eucalyptus grandis HOM05D006287 ORTHO05D008192 1.6e-28 132.5 154 47.4
MSTRG.11775 Avicennia marina HOM05D006287 ORTHO05D008192 1.4e-27 129.4 116 50.9
HanXRQChr02g0050751 Helianthus annuus HOM05D006287 ORTHO05D008192 1.5e-26 125.9 194 39.7
LjContig00081g0002723 Lotus japonicus HOM05D006287 ORTHO05D008192 3.3e-26 124.8 156 39.7
AL4G36540 Arabidopsis lyrata HOM05D006287 ORTHO05D008192 5.7e-26 124.0 122 52.5
TPR.G5411 Trifolium pratense HOM05D008207 ORTHO05D010373 5.7e-26 124.0 138 46.4
ClCG02G013330 Citrullus lanatus HOM05D006287 ORTHO05D008192 7.4e-26 123.6 210 36.7
Glyma.07G068500 Glycine max HOM05D006287 ORTHO05D008192 1.3e-25 122.9 125 48.8
Medtr4g076540 Medicago truncatula HOM05D006287 ORTHO05D008192 8.2e-25 120.2 170 42.4
THA.LOC104824237 Tarenaya hassleriana HOM05D006287 ORTHO05D008192 5.3e-24 117.5 123 48.8
Nn3g20345 Nelumbo nucifera HOM05D006287 ORTHO05D008192 1.6e-23 115.9 127 49.6
Lsat_1_v5_gn_6_22161 Lactuca sativa HOM05D006287 ORTHO05D008192 2.0e-23 115.5 178 40.4
Ah.13g068920 Amaranthus hybridus HOM05D006287 ORTHO05D008192 3.5e-23 114.8 141 46.8
Carub.0004s2128 Capsella rubella HOM05D006287 ORTHO05D008192 1.0e-22 113.2 122 49.2
THA.LOC104809984 Tarenaya hassleriana HOM05D006287 ORTHO05D008192 1.0e-22 113.2 119 48.7
Sed0018262 Sechium edule HOM05D006287 ORTHO05D008192 2.2e-22 112.1 205 37.6
MD04G1151000 Malus domestica HOM05D006287 ORTHO05D008192 2.9e-22 111.7 74 70.3
CDE03G0083 Ceratophyllum demersum HOM05D006287 ORTHO05D008192 6.5e-22 110.5 125 43.2
AT3G54980 Arabidopsis thaliana HOM05D006287 ORTHO05D008192 1.1e-21 109.8 124 48.4
MBI08_g04815_MAGBIO Magnolia biondii HOM05D006287 ORTHO05D008192 1.1e-21 109.8 131 42.7
Sed0001816 Sechium edule HOM05D006287 ORTHO05D008192 1.1e-21 109.8 128 45.3
Carub.0005s2160 Capsella rubella HOM05D006287 ORTHO05D008192 1.5e-21 109.4 122 48.4
AUR62015978 Chenopodium quinoa HOM05D006287 ORTHO05D008192 1.5e-21 109.4 224 36.6
Sp4g21560 Schrenkiella parvula HOM05D006287 ORTHO05D008192 1.9e-21 109.0 195 37.9
SpUn0018_0110 Schrenkiella parvula HOM05D006287 ORTHO05D008192 1.9e-21 109.0 195 37.9
FvH4_5g25890 Fragaria vesca HOM05D006287 ORTHO05D008192 4.2e-21 107.8 144 44.4
FAN18G3351 Fragaria x ananassa HOM05D006287 ORTHO05D008192 4.2e-21 107.8 144 44.4
Aa31sc33G30 Aethionema arabicum HOM05D006287 ORTHO05D008192 9.4e-21 106.7 121 44.6
Thhalv10010921m.g Eutrema salsugineum HOM05D006287 ORTHO05D008192 9.4e-21 106.7 183 38.8
CARHR164980 Cardamine hirsuta HOM05D006287 ORTHO05D008192 1.2e-20 106.3 174 39.7
TPR.G5606 Trifolium pratense HOM05D006287 ORTHO05D008192 1.2e-20 106.3 187 34.2
AL5G36090 Arabidopsis lyrata HOM05D006287 ORTHO05D008192 1.6e-20 105.9 124 47.6
DCAR_006446 Daucus carota HOM05D006287 ORTHO05D008192 2.1e-20 105.5 163 38.7
AT2G39230 Arabidopsis thaliana HOM05D006287 ORTHO05D008192 3.6e-20 104.8 193 35.8
BcaB01g00140 Brassica carinata HOM05D006287 ORTHO05D008192 3.6e-20 104.8 179 36.3
MELO3C020947.2 Cucumis melo HOM05D006287 ORTHO05D008192 3.6e-20 104.8 130 43.1
Thhalv10017602m.g Eutrema salsugineum HOM05D006287 ORTHO05D008192 3.6e-20 104.8 185 37.3
A09p47970 Brassica napus HOM05D006287 ORTHO05D008192 6.1e-20 104.0 168 36.9
CsaV3_2G017510 Cucumis sativus L. HOM05D006287 ORTHO05D008192 8.0e-20 103.6 174 38.5
ATR0782G035 Amborella trichopoda HOM05D006287 ORTHO05D008192 1.0e-19 103.2 133 39.8
BraA09t40252Z Brassica rapa HOM05D006287 ORTHO05D008192 6.8e-19 100.5 225 33.3
Aqoxy7G02057 Aquilegia oxysepala HOM05D006287 ORTHO05D008192 2.6e-18 98.6 227 33.0
BolC8t50627H Brassica oleracea HOM05D006287 ORTHO05D008192 4.4e-18 97.8 166 38.6
AUR62021186 Chenopodium quinoa HOM05D006287 ORTHO05D008192 4.4e-18 97.8 112 43.8
Sc25g0000480 Simmondsia chinensis HOM05D006287 ORTHO05D008192 4.4e-18 97.8 172 34.9
BcaNung04649 Brassica carinata HOM05D006287 ORTHO05D008192 7.5e-18 97.1 226 34.1
C08p30210 Brassica napus HOM05D006287 ORTHO05D008192 7.5e-18 97.1 226 34.1
MD12G1164900 Malus domestica HOM05D006287 ORTHO05D008192 4.8e-17 94.4 77 59.7
Hund04746 Selenicereus undatus HOM05D006287 ORTHO05D008192 1.4e-16 92.8 106 44.3
Nitab4.5_0008089g0010 Nicotiana tabacum HOM05D006287 ORTHO05D008192 7.0e-16 90.5 76 52.6
ATR0782G042 Amborella trichopoda HOM05D006287 ORTHO05D008192 1.2e-15 89.7 198 29.8
AUR62021185 Chenopodium quinoa HOM05D006287 ORTHO05D008192 2.7e-12 78.6 215 30.7
BcaNung04644 Brassica carinata HOM05D006287 ORTHO05D008192 4.7e-12 77.8 203 32.5
AUR62015977 Chenopodium quinoa HOM05D006287 ORTHO05D008192 2.3e-11 75.5 209 29.2
RcHm_v2.0_Chr6g0264781 Rosa chinensis HOM05D006287 ORTHO05D008192 4.0e-11 74.7 77 49.4
HPP92_023171 Vanilla planifolia HOM05D006287 ORTHO05D008192 5.2e-11 74.3 145 35.2
Oeu030203.1 Olea europaea HOM05D006287 ORTHO05D000003 8.8e-11 73.6 52 63.5
FAN08G1130 Fragaria x ananassa HOM05D006287 ORTHO05D008192 1.3e-09 69.7 52 57.7
RcHm_v2.0_Chr4g0410561 Rosa chinensis HOM05D006287 ORTHO05D008192 2.2e-09 68.9 51 58.8
ECA233G4604 Erigeron canadensis HOM05D005914 ORTHO05D007361 6.3e-09 67.4 52 57.7
Gohir.A10G099700 Gossypium hirsutum HOM05D006287 ORTHO05D008192 1.8e-08 65.9 49 57.1
Gohir.D10G088500 Gossypium hirsutum HOM05D006287 ORTHO05D008192 3.5e-07 61.6 44 59.1
SGA_v2.0_scaffold169G38601 Striga asiatica HOM05D007496 ORTHO05D009479 1.0e-06 60.1 126 34.9
vmacro10360 Vaccinium macrocarpon HOM05D007426 ORTHO05D009167 1.3e-06 59.7 131 30.5
CAN.G1030.29 Capsicum annuum HOM05D006287 ORTHO05D008192 2.9e-06 58.5 57 50.9
ClCG01G007050 Citrullus lanatus HOM05D007496 ORTHO05D009479 3.8e-06 58.2 126 31.0
MSTRG.20095 Avicennia marina HOM05D007496 ORTHO05D009479 6.6e-06 57.4 131 31.3
CsaV3_5G017450 Cucumis sativus L. HOM05D007496 ORTHO05D009479 6.6e-06 57.4 126 29.4


User provided reference genes

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