Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv11478 Davidia involucrata HOM05D002496 ORTHO05D002787 7.6e-248 860.1 464 100.0
Dinv13473 Davidia involucrata HOM05D002496 ORTHO05D002787 1.3e-215 753.1 501 84.6
Actinidia39346 Actinidia chinensis HOM05D002496 ORTHO05D002787 9.4e-198 693.7 499 79.4
Oeu023952.2 Olea europaea HOM05D002496 ORTHO05D002787 2.9e-191 672.2 499 77.4
Cc01_g00070 Coffea canephora HOM05D002496 ORTHO05D002787 5.0e-191 671.4 498 76.1
CSS0046180 Camellia sinensis var. sinensis HOM05D002496 ORTHO05D002787 8.5e-191 670.6 499 77.0
Manes.03G087600 Manihot esculenta HOM05D002496 ORTHO05D002787 8.0e-189 664.1 508 75.8
SalBow2G0058 Salvia bowleyana HOM05D002496 ORTHO05D002787 1.4e-188 663.3 507 74.2
Prupe.6G003300 Prunus persica HOM05D002496 ORTHO05D002787 1.8e-188 662.9 514 74.7
QL01p003675 Quercus lobata HOM05D002496 ORTHO05D002787 2.3e-188 662.5 515 75.1
Sopen12g035030 Solanum pennellii HOM05D002496 ORTHO05D002787 1.2e-187 660.2 439 84.3
Cfa009562 Carpinus fangiana HOM05D002496 ORTHO05D002787 1.5e-187 659.8 455 83.3
Solyc12g100360.1 Solanum lycopersicum HOM05D002496 ORTHO05D002787 1.5e-187 659.8 439 84.1
TAR623G0218 Trochodendron aralioides HOM05D002496 ORTHO05D002787 2.0e-187 659.4 516 74.0
vmacro12599 Vaccinium macrocarpon HOM05D002496 ORTHO05D002787 2.0e-187 659.4 501 75.2
GSVIVG01025470001 Vitis vinifera HOM05D002496 ORTHO05D002787 3.4e-187 658.7 514 75.7
FAN16G0954 Fragaria x ananassa HOM05D002496 ORTHO05D002787 4.4e-187 658.3 537 72.1
MD11G1003500 Malus domestica HOM05D002496 ORTHO05D002787 9.8e-187 657.1 513 74.1
FAN25G0679 Fragaria x ananassa HOM05D002496 ORTHO05D002787 1.3e-186 656.8 518 73.9
Oeu023700.1 Olea europaea HOM05D002496 ORTHO05D002787 1.7e-186 656.4 499 75.6
TAR369G0007 Trochodendron aralioides HOM05D002496 ORTHO05D002787 1.7e-186 656.4 515 74.6
MD03G1003600 Malus domestica HOM05D002496 ORTHO05D002787 2.2e-186 656.0 514 73.5
CiPaw.13G177100 Carya illinoinensis HOM05D002496 ORTHO05D002787 4.9e-186 654.8 512 74.6
Ciclev10014012m.g Citrus clementina HOM05D002496 ORTHO05D002787 7.0e-185 651.0 515 74.0
Migut.D02589 Erythranthe guttata HOM05D002496 ORTHO05D002787 9.1e-185 650.6 500 74.8
MSTRG.20937 Avicennia marina HOM05D002496 ORTHO05D002787 7.7e-184 647.5 499 73.5
Potri.001G003900 Populus trichocarpa HOM05D002496 ORTHO05D002787 8.6e-183 644.0 514 72.8
Nn7g35861 Nelumbo nucifera HOM05D002496 ORTHO05D002787 1.5e-182 643.3 515 73.2
Migut.D02566 Erythranthe guttata HOM05D002496 ORTHO05D002787 3.6e-181 638.6 489 74.4
Thecc.09G199700 Theobroma cacao HOM05D002496 ORTHO05D002787 6.1e-181 637.9 515 73.8
HanXRQChr13g0405751 Helianthus annuus HOM05D002496 ORTHO05D002787 8.0e-181 637.5 501 74.1
Rhsim01G0184300 Rhododendron simsii HOM05D002496 ORTHO05D002787 3.0e-180 635.6 500 73.8
Potri.003G221100 Populus trichocarpa HOM05D002496 ORTHO05D002787 4.0e-180 635.2 513 73.3
Duzib168G0200 Durio zibethinus HOM05D002496 ORTHO05D002787 6.8e-180 634.4 515 73.4
HanXRQChr02g0057261 Helianthus annuus HOM05D002496 ORTHO05D002787 2.6e-179 632.5 500 74.0
Sabra01G0002600 Salix brachista HOM05D002496 ORTHO05D002787 2.6e-179 632.5 511 72.8
Peaxi162Scf00738g00312 Petunia axillaris HOM05D002496 ORTHO05D002787 9.8e-179 630.6 439 81.8
RcHm_v2.0_Chr5g0083811 Rosa chinensis HOM05D002496 ORTHO05D002787 3.7e-178 628.6 513 72.7
DCAR_029934 Daucus carota HOM05D002496 ORTHO05D002787 1.2e-176 623.6 498 73.5
Glyma.08G125500 Glycine max HOM05D002496 ORTHO05D002787 1.6e-176 623.2 508 73.2
Cpa.g.sc119.40 Carica papaya HOM05D002496 ORTHO05D002787 5.9e-176 621.3 511 72.0
Sabra03G0164600 Salix brachista HOM05D002496 ORTHO05D002787 5.0e-175 618.2 522 71.3
Gohir.A03G022300 Gossypium hirsutum HOM05D002496 ORTHO05D002787 6.6e-175 617.8 509 72.7
Actinidia30436 Actinidia chinensis HOM05D002496 ORTHO05D002787 8.6e-175 617.5 499 72.1
ECA233G0145 Erigeron canadensis HOM05D002496 ORTHO05D002787 1.1e-174 617.1 440 80.5
Gorai.003G153800 Gossypium raimondii HOM05D002496 ORTHO05D002787 2.5e-174 615.9 509 72.5
Gohir.D03G146400 Gossypium hirsutum HOM05D002496 ORTHO05D002787 5.6e-174 614.8 509 72.5
Carub.0001s4386 Capsella rubella HOM05D002496 ORTHO05D002787 1.2e-173 613.6 448 77.7
Sp1g41030 Schrenkiella parvula HOM05D002496 ORTHO05D002787 1.6e-173 613.2 453 76.8
AL1G63400 Arabidopsis lyrata HOM05D002496 ORTHO05D002787 2.1e-173 612.8 448 77.9
CARHR045010 Cardamine hirsuta HOM05D002496 ORTHO05D002787 2.8e-173 612.5 448 77.7
CANSAT11G2110 Cannabis sativa HOM05D002496 ORTHO05D002787 4.7e-173 611.7 510 70.8
Aa31LG10G1150 Aethionema arabicum HOM05D002496 ORTHO05D002787 2.3e-172 609.4 481 73.4
Thhalv10011175m.g Eutrema salsugineum HOM05D002496 ORTHO05D002787 6.8e-172 607.8 448 77.2
BcaB04g16962 Brassica carinata HOM05D002496 ORTHO05D002787 8.9e-172 607.4 445 76.9
AT1G55350 Arabidopsis thaliana HOM05D002496 ORTHO05D002787 2.6e-171 605.9 448 77.2
Sed0022657 Sechium edule HOM05D002496 ORTHO05D002787 3.4e-171 605.5 417 77.5
THA.LOC104822681 Tarenaya hassleriana HOM05D002496 ORTHO05D002787 5.8e-171 604.7 449 78.0
BolC6t36109H Brassica oleracea HOM05D002496 ORTHO05D002787 7.5e-171 604.4 448 75.4
A06p00230 Brassica napus HOM05D002496 ORTHO05D002787 1.3e-170 603.6 448 75.7
Phvul.002G247600 Phaseolus vulgaris HOM05D002496 ORTHO05D002787 2.2e-170 602.8 508 71.3
BraA06t23239Z Brassica rapa HOM05D002496 ORTHO05D002787 2.9e-170 602.4 448 75.7
MELO3C015577.2 Cucumis melo HOM05D002496 ORTHO05D002787 2.9e-170 602.4 423 77.1
CsaV3_1G041650 Cucumis sativus L. HOM05D002496 ORTHO05D002787 2.9e-170 602.4 423 76.8
C06p10330 Brassica napus HOM05D002496 ORTHO05D002787 1.1e-169 600.5 447 74.0
ClCG03G014540 Citrullus lanatus HOM05D002496 ORTHO05D002787 1.4e-169 600.1 423 76.8
Lsat_1_v5_gn_6_53141 Lactuca sativa HOM05D002496 ORTHO05D002787 2.4e-169 599.4 499 70.3
VMungo0251G3571 Vigna mungo HOM05D002496 ORTHO05D002787 3.2e-169 599.0 507 71.6
Aqoxy1G00475 Aquilegia oxysepala HOM05D002496 ORTHO05D002787 4.1e-169 598.6 515 70.1
TPR.G6803 Trifolium pratense HOM05D002496 ORTHO05D002787 5.4e-169 598.2 510 71.2
Medtr8g088520 Medicago truncatula HOM05D002496 ORTHO05D002787 7.0e-169 597.8 510 71.8
Sc16g0012220 Simmondsia chinensis HOM05D002496 ORTHO05D002787 2.0e-168 596.3 455 74.7
Ca_17842_v3 Cicer arietinum L. HOM05D002496 ORTHO05D002787 4.6e-168 595.1 416 79.1
Nitab4.5_0000827g0130 Nicotiana tabacum HOM05D002496 ORTHO05D002787 7.8e-168 594.3 439 79.0
Sed0000966 Sechium edule HOM05D002496 ORTHO05D002787 1.0e-167 594.0 422 77.3
Psat7g064160 Pisum sativum HOM05D002496 ORTHO05D002787 1.3e-167 593.6 510 70.6
Eucgr.J01766 Eucalyptus grandis HOM05D002496 ORTHO05D002787 1.7e-167 593.2 509 64.8
THA.LOC104810325 Tarenaya hassleriana HOM05D002496 ORTHO05D002787 3.0e-167 592.4 449 76.6
Haze_22941 Corylus avellana HOM05D002496 ORTHO05D002787 6.6e-167 591.3 458 77.1
BcaC08g43619 Brassica carinata HOM05D002496 ORTHO05D002787 2.8e-165 585.9 496 65.7
PSO384G1583 Papaver somniferum HOM05D002496 ORTHO05D002787 1.1e-164 583.9 423 74.5
PSO339G0705 Papaver somniferum HOM05D002496 ORTHO05D002787 3.1e-164 582.4 423 74.5
Lalb_Chr13g0295581 Lupinus albus HOM05D002496 ORTHO05D002787 8.9e-164 580.9 414 76.6
PGR119G1355 Punica granatum HOM05D002496 ORTHO05D002787 4.4e-163 578.6 509 68.4
AUR62040902 Chenopodium quinoa HOM05D002496 ORTHO05D002787 7.1e-161 571.2 457 71.8
Glyma.05G167200 Glycine max HOM05D002496 ORTHO05D002787 2.7e-160 569.3 508 65.4
FvH4_3g45741 Fragaria vesca HOM05D002496 ORTHO05D002787 1.0e-159 567.4 462 71.9
Lj2A763T47 Lonicera japonica HOM05D002496 ORTHO05D002787 1.1e-158 563.9 450 74.2
ATR0827G153 Amborella trichopoda HOM05D002496 ORTHO05D002787 9.9e-155 550.8 441 73.9
HPP92_024699 Vanilla planifolia HOM05D002496 ORTHO05D002787 4.1e-153 545.4 458 69.0
arahy.Tifrunner.gnm1.ann1.3G7H7K Arachis hypogaea HOM05D002496 ORTHO05D002787 3.3e-150 535.8 506 64.8
EL10Ac4g10386 Beta vulgaris HOM05D002496 ORTHO05D002787 2.8e-149 532.7 479 67.0
Lj4g0028195 Lotus japonicus HOM05D002496 ORTHO05D002787 1.3e-146 523.9 413 70.9
TWI34G0193 Tripterygium wilfordii HOM05D002496 ORTHO05D002787 2.7e-144 516.2 386 74.9
arahy.Tifrunner.gnm1.ann1.P751E4 Arachis hypogaea HOM05D002496 ORTHO05D002787 4.3e-142 508.8 506 62.8
Os02g0709400 Oryza sativa ssp. japonica HOM05D002496 ORTHO05D002787 5.3e-140 501.9 458 64.6
Atru.chr3.2106 Acer truncatum HOM05D002496 ORTHO05D002787 1.5e-139 500.4 515 62.9
SGA_v2.0_scaffold3G01729 Striga asiatica HOM05D002496 ORTHO05D002787 2.7e-136 489.6 439 68.3
MBI01_g25638_MAGBIO Magnolia biondii HOM05D002496 ORTHO05D002787 9.6e-134 481.1 527 59.8
Zm00001eb014030 Zea mays HOM05D002496 ORTHO05D002787 7.6e-131 471.5 455 59.8
CAN.G1703.18 Capsicum annuum HOM05D002496 ORTHO05D002787 3.2e-129 466.1 324 83.0
CDE02G0627 Ceratophyllum demersum HOM05D002496 ORTHO05D002787 1.2e-128 464.2 514 57.0
AUR62019163 Chenopodium quinoa HOM05D002496 ORTHO05D002787 6.0e-128 461.8 443 61.2
C03p92660 Brassica napus HOM05D002496 ORTHO05D002787 7.9e-128 461.5 413 64.2
CAN.G1751.12 Capsicum annuum HOM05D002496 ORTHO05D002787 3.9e-127 459.1 324 82.1
CAN.G1703.3 Capsicum annuum HOM05D002496 ORTHO05D002787 2.5e-126 456.4 324 81.5
COL.COLO4_05794 Corchorus olitorius HOM05D002496 ORTHO05D002787 9.6e-126 454.5 307 79.2
SEGI_17528 Sequoiadendron giganteum HOM05D002496 ORTHO05D002787 2.1e-125 453.4 464 63.1
unitig_899.g15353 Utricularia gibba HOM05D002496 ORTHO05D002787 2.1e-125 453.4 447 62.2
CAN.G575.132 Capsicum annuum HOM05D002496 ORTHO05D002787 1.3e-122 444.1 330 76.7
Hund21627 Selenicereus undatus HOM05D002496 ORTHO05D002787 3.3e-118 429.5 458 60.7
CAN.G1579.7 Capsicum annuum HOM05D002496 ORTHO05D002787 4.3e-118 429.1 326 78.5
CAN.G309.134 Capsicum annuum HOM05D002496 ORTHO05D002787 1.5e-115 420.6 295 78.0
SMO332G0020 Selaginella moellendorffii HOM05D002496 ORTHO05D002787 3.9e-111 406.0 447 61.5
Pp3c17_17550 Physcomitrium patens HOM05D002496 ORTHO05D002787 7.4e-110 401.7 463 58.1
AagrBONN_evm.TU.Sc2ySwM_344.939 Anthoceros agrestis HOM05D002496 ORTHO05D002787 1.5e-102 377.5 478 49.6
CAN.G309.99 Capsicum annuum HOM05D002496 ORTHO05D002787 1.3e-101 374.4 297 70.4
Mapoly0026s0110 Marchantia polymorpha HOM05D002496 ORTHO05D002787 1.8e-100 370.5 533 49.3
Mapoly0026s0090 Marchantia polymorpha HOM05D002496 ORTHO05D002787 1.0e-98 364.8 542 49.4
CAN.G1783.2 Capsicum annuum HOM05D002496 ORTHO05D002787 1.4e-97 360.9 283 73.9
CAN.G4338.1 Capsicum annuum HOM05D002496 ORTHO05D002787 7.9e-96 355.1 239 80.8
CAN.G2026.1 Capsicum annuum HOM05D002496 ORTHO05D002787 1.8e-92 344.0 259 80.7
CAN.G575.112 Capsicum annuum HOM05D002496 ORTHO05D002787 2.0e-91 340.5 327 66.7
CAN.G2119.3 Capsicum annuum HOM05D002496 ORTHO05D002787 8.8e-87 325.1 242 82.2
CAN.G1833.6 Capsicum annuum HOM05D002496 ORTHO05D002787 1.7e-85 320.9 241 81.3
CAN.G1579.14 Capsicum annuum HOM05D002496 ORTHO05D002787 4.8e-85 319.3 241 80.9
CAN.G1669.8 Capsicum annuum HOM05D002496 ORTHO05D002787 1.5e-81 307.8 231 71.9
CAN.G309.123 Capsicum annuum HOM05D002496 ORTHO05D002787 4.2e-81 306.2 215 76.3
CAN.G1353.19 Capsicum annuum HOM05D002496 ORTHO05D002787 5.5e-81 305.8 291 62.9
CAN.G309.146 Capsicum annuum HOM05D002496 ORTHO05D002787 4.7e-80 302.8 241 77.2
CiPaw.14G137000 Carya illinoinensis HOM05D002496 ORTHO05D002787 2.3e-79 300.4 316 64.2
CAN.G309.113 Capsicum annuum HOM05D002496 ORTHO05D002787 1.2e-78 298.1 235 78.3
arahy.Tifrunner.gnm1.ann1.WZQ8WP Arachis hypogaea HOM05D002496 ORTHO05D002787 3.7e-77 293.1 402 50.0
CAN.G134.157 Capsicum annuum HOM05D002496 ORTHO05D002787 8.3e-77 292.0 323 61.3
CAN.G2802.1 Capsicum annuum HOM05D002496 ORTHO05D002787 2.4e-76 290.4 210 78.1
Psat3g144720 Pisum sativum HOM05D002496 ORTHO05D002787 4.2e-73 279.6 242 66.1
CAN.G134.148 Capsicum annuum HOM05D002048 ORTHO05D002146 1.6e-72 277.7 219 79.0
CAN.G309.130 Capsicum annuum HOM05D002496 ORTHO05D002787 3.7e-69 266.5 215 68.8
SMO334G0130 Selaginella moellendorffii HOM05D002496 ORTHO05D002787 8.3e-69 265.4 346 57.5
CAN.G134.139 Capsicum annuum HOM05D002496 ORTHO05D002787 9.2e-68 261.9 324 57.1
CAN.G309.103 Capsicum annuum HOM05D002496 ORTHO05D002787 4.5e-67 259.6 179 78.2
CAN.G309.125 Capsicum annuum HOM05D002496 ORTHO05D002787 5.6e-65 252.7 194 74.7
CAN.G309.110 Capsicum annuum HOM05D002496 ORTHO05D002787 5.7e-62 242.7 262 58.8
CAN.G134.142 Capsicum annuum HOM05D002496 ORTHO05D002787 1.1e-60 238.4 236 60.2
CAN.G134.151 Capsicum annuum HOM05D002496 ORTHO05D002787 4.1e-60 236.5 179 72.6
CAN.G2119.2 Capsicum annuum HOM05D002496 ORTHO05D002787 9.5e-57 225.3 235 66.4
CAN.G309.100 Capsicum annuum HOM05D002496 ORTHO05D002787 1.2e-56 224.9 297 49.5
CAN.G1563.1 Capsicum annuum HOM05D002496 ORTHO05D002787 4.7e-56 223.0 170 72.4
CAN.G1579.2 Capsicum annuum HOM05D002518 ORTHO05D002630 1.0e-55 221.9 156 79.5
CAN.G1353.22 Capsicum annuum HOM05D002496 ORTHO05D002787 6.4e-53 212.6 152 75.7
CAN.G309.135 Capsicum annuum HOM05D002496 ORTHO05D002787 1.4e-52 211.5 184 65.8
SHI31316 Sapria himalayana HOM05D002496 ORTHO05D002787 1.4e-52 211.5 158 70.9
CAN.G309.107 Capsicum annuum HOM05D002496 ORTHO05D002787 1.3e-50 204.9 220 57.7
CAN.G8.32 Capsicum annuum HOM05D002496 ORTHO05D002787 2.5e-49 200.7 155 72.9
CAN.G575.1 Capsicum annuum HOM05D002496 ORTHO05D002787 9.5e-49 198.7 109 89.0
CAN.G309.132 Capsicum annuum HOM05D002496 ORTHO05D002787 2.0e-46 191.0 135 76.3
Psat0s11647g0040 Pisum sativum HOM05D002496 ORTHO05D002787 1.7e-45 188.0 106 87.7
SHI31315 Sapria himalayana HOM05D002496 ORTHO05D002787 1.7e-45 188.0 239 57.3
CAN.G2177.2 Capsicum annuum HOM05D002496 ORTHO05D002787 2.2e-45 187.6 206 57.3
CAN.G1353.10 Capsicum annuum HOM05D002496 ORTHO05D002787 6.4e-45 186.0 186 60.8
CAN.G108.57 Capsicum annuum HOM05D002496 ORTHO05D002787 4.6e-43 179.9 101 88.1
CAN.G1353.3 Capsicum annuum HOM05D002496 ORTHO05D002787 5.1e-42 176.4 259 47.9
CAN.G1353.27 Capsicum annuum HOM05D002496 ORTHO05D002787 7.3e-41 172.6 168 63.1
CBR_g23691 Chara braunii HOM05D001190 ORTHO05D001764 3.6e-40 170.2 268 45.1
CAN.G134.146 Capsicum annuum HOM05D002518 ORTHO05D002630 4.0e-39 166.8 168 61.3
CAN.G309.143 Capsicum annuum HOM05D002496 ORTHO05D002630 6.4e-37 159.5 220 48.6
CAN.G309.148 Capsicum annuum HOM05D002496 ORTHO05D002787 2.8e-32 144.1 97 79.4
Lsat_1_v5_gn_7_65640 Lactuca sativa HOM05D002496 ORTHO05D002787 1.3e-24 118.6 164 47.6
CAN.G2101.1 Capsicum annuum HOM05D002496 ORTHO05D002787 1.6e-24 118.2 99 72.7
Lsat_1_v5_gn_2_54100 Lactuca sativa HOM05D002496 ORTHO05D003550 3.1e-23 114.0 95 70.5
CAN.G309.114 Capsicum annuum HOM05D002496 ORTHO05D002787 9.0e-23 112.5 78 79.5
CAN.G309.121 Capsicum annuum HOM05D002496 ORTHO05D002787 9.0e-23 112.5 83 73.5
PSO478G3224 Papaver somniferum HOM05D002496 ORTHO05D002787 2.6e-22 110.9 145 47.6
Psat7g106000 Pisum sativum HOM05D002496 ORTHO05D002787 8.4e-21 105.9 94 58.5
QL03p015964 Quercus lobata HOM05D002496 ORTHO05D002787 1.1e-17 95.5 51 78.4
CAN.G743.3 Capsicum annuum HOM05D002496 ORTHO05D002787 9.6e-17 92.4 238 40.8
CAN.G309.144 Capsicum annuum HOM05D002496 ORTHO05D002146 3.8e-13 80.5 74 75.7
CAN.G309.141 Capsicum annuum HOM05D002518 ORTHO05D002630 1.5e-09 68.6 44 79.5
CAN.G309.128 Capsicum annuum HOM05D002496 ORTHO05D002146 4.3e-09 67.0 39 82.1
CAN.G2026.4 Capsicum annuum HOM05D002496 ORTHO05D002787 3.1e-07 60.8 40 82.5
Lsat_1_v5_gn_8_87720 Lactuca sativa HOM05D002496 ORTHO05D002787 5.3e-07 60.1 93 45.2


User provided reference genes

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