Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv11193 Davidia involucrata HOM05D005415 ORTHO05D006242 2.1e-292 1008.4 566 100.0
TAR629G2415 Trochodendron aralioides HOM05D005415 ORTHO05D006242 5.1e-206 721.5 510 73.3
Actinidia18334 Actinidia chinensis HOM05D005415 ORTHO05D006242 4.2e-200 701.8 592 64.5
GSVIVG01008582001 Vitis vinifera HOM05D005415 ORTHO05D006242 6.1e-199 698.0 587 64.4
vmacro19135 Vaccinium macrocarpon HOM05D005415 ORTHO05D006242 2.9e-193 679.1 593 62.1
Thecc.03G133700 Theobroma cacao HOM05D005415 ORTHO05D006242 2.4e-187 659.4 596 60.1
Lj9C481T20 Lonicera japonica HOM05D005415 ORTHO05D006242 7.7e-186 654.4 507 69.2
CiPaw.13G052100 Carya illinoinensis HOM05D005415 ORTHO05D006242 2.7e-183 646.0 595 61.8
Duzib068G0666 Durio zibethinus HOM05D005415 ORTHO05D006242 3.6e-183 645.6 534 63.5
Rhsim08G0192500 Rhododendron simsii HOM05D005415 ORTHO05D006242 3.4e-181 639.0 561 63.3
Gorai.001G056700 Gossypium raimondii HOM05D005415 ORTHO05D006242 3.5e-178 629.0 533 61.5
Gohir.D07G053600 Gossypium hirsutum HOM05D005415 ORTHO05D006242 1.0e-177 627.5 533 61.2
QL10p002178 Quercus lobata HOM05D005415 ORTHO05D006242 8.6e-177 624.4 618 55.8
Atru.chr6.1849 Acer truncatum HOM05D005415 ORTHO05D006242 5.6e-176 621.7 492 64.2
COL.COLO4_16633 Corchorus olitorius HOM05D005415 ORTHO05D006242 7.3e-176 621.3 537 60.9
Potri.015G100200 Populus trichocarpa HOM05D005415 ORTHO05D006242 2.9e-172 609.4 579 57.0
Sc10g0010570 Simmondsia chinensis HOM05D005415 ORTHO05D006242 1.0e-169 600.9 553 58.4
Sabra15G0120800 Salix brachista HOM05D005415 ORTHO05D006242 6.6e-169 598.2 579 56.8
Ciclev10031056m.g Citrus clementina HOM05D005415 ORTHO05D006242 1.5e-168 597.0 510 61.2
Sed0003726 Sechium edule HOM05D005415 ORTHO05D006242 5.8e-165 585.1 558 56.8
CsaV3_1G000400 Cucumis sativus L. HOM05D005415 ORTHO05D006242 2.9e-164 582.8 566 57.4
Cfa018765 Carpinus fangiana HOM05D005415 ORTHO05D006242 7.0e-163 578.2 573 58.3
MSTRG.22895 Avicennia marina HOM05D005415 ORTHO05D006242 2.7e-162 576.2 575 55.1
MELO3C026191.2 Cucumis melo HOM05D005415 ORTHO05D006242 2.3e-161 573.2 555 56.4
Nitab4.5_0001213g0090 Nicotiana tabacum HOM05D005415 ORTHO05D006242 1.2e-159 567.4 558 55.4
Eucgr.B00088 Eucalyptus grandis HOM05D005415 ORTHO05D006242 6.8e-158 561.6 534 56.2
Sopen12g001850 Solanum pennellii HOM05D005415 ORTHO05D006242 1.7e-156 557.0 562 54.4
Lsat_1_v5_gn_4_82521 Lactuca sativa HOM05D005415 ORTHO05D006242 2.2e-156 556.6 618 51.6
PGR083G0902 Punica granatum HOM05D005415 ORTHO05D006242 3.7e-156 555.8 589 53.3
PGSC0003DMG400013896 Solanum tuberosum HOM05D005415 ORTHO05D006242 6.4e-156 555.1 568 53.9
Cc10_g14800 Coffea canephora HOM05D005415 ORTHO05D006242 1.2e-154 550.8 621 52.8
Solyc12g005900.3 Solanum lycopersicum HOM05D005415 ORTHO05D006242 1.6e-154 550.4 567 53.6
Migut.I00557 Erythranthe guttata HOM05D005415 ORTHO05D006242 4.6e-154 548.9 625 51.0
Hund02456 Selenicereus undatus HOM05D005415 ORTHO05D006242 6.6e-153 545.0 563 54.4
Nitab4.5_0003683g0010 Nicotiana tabacum HOM05D005415 ORTHO05D006242 1.2e-151 540.8 565 52.7
Phvul.002G284900 Phaseolus vulgaris HOM05D005415 ORTHO05D006242 2.1e-151 540.0 618 49.2
Ca_17566_v3 Cicer arietinum L. HOM05D005415 ORTHO05D006242 2.8e-151 539.7 557 55.1
Ca_29727_v3 Cicer arietinum L. HOM05D005415 ORTHO05D006242 2.8e-151 539.7 557 55.1
SalBow5G0795 Salvia bowleyana HOM05D005415 ORTHO05D006242 4.7e-151 538.9 614 50.2
DCAR_021639 Daucus carota HOM05D005415 ORTHO05D006242 2.6e-149 533.1 660 48.5
EL10Ac5g11383 Beta vulgaris HOM05D005415 ORTHO05D006242 4.4e-149 532.3 604 51.0
Haze_07175 Corylus avellana HOM05D005415 ORTHO05D006242 9.9e-149 531.2 554 55.4
HanXRQChr09g0273461 Helianthus annuus HOM05D005415 ORTHO05D006242 1.7e-148 530.4 625 48.3
AUR62043951 Chenopodium quinoa HOM05D005415 ORTHO05D006242 2.9e-148 529.6 558 53.2
Lalb_Chr13g0297171 Lupinus albus HOM05D005415 ORTHO05D006242 8.4e-148 528.1 691 45.4
ClCG06G018070 Citrullus lanatus HOM05D005415 ORTHO05D006242 3.2e-147 526.2 586 52.4
arahy.Tifrunner.gnm1.ann1.NCF6IW Arachis hypogaea HOM05D005415 ORTHO05D006242 3.5e-146 522.7 653 46.1
VMungo0251G3541 Vigna mungo HOM05D005415 ORTHO05D006242 4.6e-146 522.3 666 46.1
RcHm_v2.0_Chr7g0189541 Rosa chinensis HOM05D005415 ORTHO05D006242 9.6e-144 514.6 605 48.9
Cpa.g.sc4.162 Carica papaya HOM05D005415 ORTHO05D006242 1.2e-143 514.2 508 56.3
AUR62038846 Chenopodium quinoa HOM05D005415 ORTHO05D006242 6.2e-143 511.9 590 50.2
Lj4g0026231 Lotus japonicus HOM05D005415 ORTHO05D006242 1.4e-142 510.8 720 43.5
SGA_v2.0_scaffold414G51200 Striga asiatica HOM05D005415 ORTHO05D006242 3.1e-142 509.6 614 47.2
Peaxi162Scf00047g00185 Petunia axillaris HOM05D005415 ORTHO05D006242 5.2e-142 508.8 713 43.2
CANSAT25G2590 Cannabis sativa HOM05D005415 ORTHO05D006242 6.8e-142 508.4 625 47.8
FAN19G3201 Fragaria x ananassa HOM05D005415 ORTHO05D006242 8.9e-142 508.1 624 46.5
AUR62029576 Chenopodium quinoa HOM05D005415 ORTHO05D006242 4.4e-141 505.8 590 49.7
PSO017G0412 Papaver somniferum HOM05D005415 ORTHO05D006242 9.9e-141 504.6 700 44.6
FvH4_1g26610 Fragaria vesca HOM05D005415 ORTHO05D006242 1.3e-140 504.2 624 46.2
arahy.Tifrunner.gnm1.ann1.MQVT4E Arachis hypogaea HOM05D005415 ORTHO05D006242 1.7e-140 503.8 668 44.2
PSO478G2612 Papaver somniferum HOM05D005415 ORTHO05D006242 6.4e-140 501.9 700 44.4
Prupe.5G147700 Prunus persica HOM05D005415 ORTHO05D006242 1.4e-139 500.7 559 51.0
THA.LOC104798938 Tarenaya hassleriana HOM05D005415 ORTHO05D006242 5.4e-139 498.8 585 48.7
FAN26G2295 Fragaria x ananassa HOM05D005415 ORTHO05D006242 9.3e-139 498.0 597 47.7
unitig_8.g4692 Utricularia gibba HOM05D005415 ORTHO05D006242 1.7e-137 493.8 568 50.0
Glyma.08G010700 Glycine max HOM05D005415 ORTHO05D006242 3.9e-137 492.7 670 44.3
ECA232G0893 Erigeron canadensis HOM05D005415 ORTHO05D006242 5.1e-137 492.3 726 43.0
MBI07_g01996_MAGBIO Magnolia biondii HOM05D005415 ORTHO05D006242 5.1e-137 492.3 682 44.0
Manes.06G122000 Manihot esculenta HOM05D005415 ORTHO05D006242 1.6e-135 487.3 434 61.1
Psat7g037120 Pisum sativum HOM05D005415 ORTHO05D006242 3.6e-135 486.1 740 41.4
MD14G1152700 Malus domestica HOM05D005415 ORTHO05D006242 6.9e-134 481.9 649 45.0
Oeu030666.2 Olea europaea HOM05D005415 ORTHO05D006242 9.0e-134 481.5 908 36.2
FAN28G1156 Fragaria x ananassa HOM05D005415 ORTHO05D006242 2.6e-133 479.9 597 46.4
HPP92_021709 Vanilla planifolia HOM05D005415 ORTHO05D006242 5.8e-133 478.8 564 47.9
AL8G40620 Arabidopsis lyrata HOM05D005415 ORTHO05D006242 1.1e-131 474.6 550 49.5
Aqoxy3G01618 Aquilegia oxysepala HOM05D005415 ORTHO05D006242 1.3e-129 467.6 728 40.8
HPP92_021694 Vanilla planifolia HOM05D005415 ORTHO05D006242 1.3e-129 467.6 564 47.5
FAN23G0140 Fragaria x ananassa HOM05D005415 ORTHO05D006242 2.3e-129 466.8 576 46.5
Aa31LG1G18400 Aethionema arabicum HOM05D005415 ORTHO05D006242 3.0e-129 466.5 601 45.6
Carub.0008s2427 Capsella rubella HOM05D005415 ORTHO05D006242 8.7e-129 464.9 557 48.3
Sopen05g009520 Solanum pennellii HOM05D005415 ORTHO05D006242 1.1e-128 464.5 593 47.6
Thhalv10003815m.g Eutrema salsugineum HOM05D005415 ORTHO05D006242 1.5e-128 464.2 528 49.2
CARHR277400 Cardamine hirsuta HOM05D005415 ORTHO05D006242 2.5e-128 463.4 529 49.1
Nn4g22247 Nelumbo nucifera HOM05D005415 ORTHO05D006242 2.8e-127 459.9 420 61.0
Medtr8g096570 Medicago truncatula HOM05D005415 ORTHO05D006242 8.1e-127 458.4 687 41.0
AT5G63540 Arabidopsis thaliana HOM05D005415 ORTHO05D006242 1.1e-126 458.0 592 46.6
BcaC04g23337 Brassica carinata HOM05D005415 ORTHO05D006242 1.7e-124 450.7 578 46.2
C09p09400 Brassica napus HOM05D005415 ORTHO05D006242 4.2e-123 446.0 579 46.1
A09p08330 Brassica napus HOM05D005415 ORTHO05D006242 1.6e-122 444.1 582 45.7
Sp2g26630 Schrenkiella parvula HOM05D005415 ORTHO05D006242 1.6e-122 444.1 526 47.9
Actinidia25556 Actinidia chinensis HOM05D005415 ORTHO05D006242 1.8e-118 430.6 458 54.6
BcaB04g19924 Brassica carinata HOM05D005415 ORTHO05D006242 3.1e-118 429.9 543 46.2
BolC9t53852H Brassica oleracea HOM05D005415 ORTHO05D006242 1.5e-117 427.6 617 43.3
BraA09t36482Z Brassica rapa HOM05D005415 ORTHO05D006242 2.2e-116 423.7 623 43.2
Zm00001eb085270 Zea mays HOM05D005415 ORTHO05D006242 9.3e-115 418.3 497 48.1
CDE05G0217 Ceratophyllum demersum HOM05D005415 ORTHO05D006242 7.4e-112 408.7 687 39.3
Ah.11g045540 Amaranthus hybridus HOM05D005415 ORTHO05D006242 1.1e-110 404.8 545 46.2
ATR0582G259 Amborella trichopoda HOM05D005415 ORTHO05D006242 2.1e-106 390.6 732 36.1
Solyc05g014400.4 Solanum lycopersicum HOM05D005415 ORTHO05D006242 1.8e-105 387.5 453 50.1
CAN.G2034.2 Capsicum annuum HOM05D005415 ORTHO05D006242 1.1e-104 384.8 453 50.1
CSS0000208 Camellia sinensis var. sinensis HOM05D005415 ORTHO05D006242 3.7e-103 379.8 242 79.8
Gohir.A07G049320 Gossypium hirsutum HOM05D005415 ORTHO05D006242 6.3e-87 325.9 202 75.7
TPR.G12905 Trifolium pratense HOM05D005415 ORTHO05D006242 6.5e-84 315.8 311 54.0
SMO146G0239 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 3.5e-77 293.5 455 39.3
SMO173G0006 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 3.2e-75 287.0 455 38.5
Gohir.A07G049360 Gossypium hirsutum HOM05D005415 ORTHO05D006242 9.8e-72 275.4 206 68.4
SMO146G0204 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 1.7e-71 274.6 440 38.9
Mapoly0147s0014 Marchantia polymorpha HOM05D005415 ORTHO05D006242 1.6e-69 268.1 675 29.9
Os04g0391000 Oryza sativa ssp. japonica HOM05D005415 ORTHO05D006242 2.9e-68 263.8 229 60.3
Pp3c4_19920 Physcomitrium patens HOM05D005415 ORTHO05D006242 2.5e-67 260.8 645 32.7
AagrBONN_evm.TU.Sc2ySwM_117.2504 Anthoceros agrestis HOM05D005415 ORTHO05D006242 6.1e-66 256.1 528 34.5
TPR.G12965 Trifolium pratense HOM05D005415 ORTHO05D006242 5.7e-64 249.6 211 60.7
SHI31561 Sapria himalayana HOM05D005415 ORTHO05D006242 9.2e-62 242.3 197 62.9
TAR629G1046 Trochodendron aralioides HOM05D005415 ORTHO05D006242 2.6e-56 224.2 139 79.9
SMO173G0041 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 5.4e-54 216.5 410 36.3
SHI10695 Sapria himalayana HOM05D005415 ORTHO05D006242 6.2e-50 203.0 192 56.2
SHI10702 Sapria himalayana HOM05D005415 ORTHO05D006242 3.5e-45 187.2 270 42.6
CSS0026788 Camellia sinensis var. sinensis HOM05D005415 ORTHO05D006242 1.7e-39 168.3 100 82.0
CBR_g45436 Chara braunii HOM05D005415 ORTHO05D006242 1.7e-39 168.3 233 38.6
Cre17.g712450 Chlamydomonas reinhardtii HOM05D005415 ORTHO05D006242 1.9e-30 138.3 196 39.8
SHI31560 Sapria himalayana HOM05D000002 ORTHO05D000001 5.4e-30 136.7 235 38.3
MCO10G310 Micromonas commoda HOM05D005415 ORTHO05D006242 6.0e-29 133.3 234 38.0
PSO478G1426 Papaver somniferum HOM05D005415 ORTHO05D006242 7.8e-29 132.9 304 35.2
PSO302G0032 Papaver somniferum HOM05D005415 ORTHO05D006242 1.7e-28 131.7 192 42.7
Medtr1g057810 Medicago truncatula HOM05D000559 ORTHO05D000596 3.9e-28 130.6 216 40.7
Medtr1g105150 Medicago truncatula HOM05D000559 ORTHO05D000596 3.9e-28 130.6 216 40.7
PSO063G6924 Papaver somniferum HOM05D005415 ORTHO05D006242 1.3e-23 115.5 156 41.7
SEGI_11582 Sequoiadendron giganteum HOM05D005415 ORTHO05D006242 7.8e-21 106.3 80 65.0
TAR381G1645 Trochodendron aralioides HOM05D005415 ORTHO05D006242 1.1e-19 102.4 59 78.0
Lsat_1_v5_gn_8_99581 Lactuca sativa HOM05D005415 ORTHO05D006242 2.5e-19 101.3 134 46.3
PRCOL_00000625 Prasinoderma coloniale HOM05D005415 ORTHO05D006242 2.5e-19 101.3 142 41.5
Medtr1g069480 Medicago truncatula HOM05D005415 ORTHO05D006242 9.3e-14 82.8 107 42.1
Lsat_1_v5_gn_4_20540 Lactuca sativa HOM05D005415 ORTHO05D006242 2.7e-13 81.3 48 81.2
SEGI_12458 Sequoiadendron giganteum HOM05D005415 ORTHO05D006242 5.1e-12 77.0 79 41.8
SMO146G0246 Selaginella moellendorffii HOM05D025663 ORTHO05D006242 6.7e-12 76.6 268 29.5
SHI10696 Sapria himalayana HOM05D005415 ORTHO05D006242 2.8e-10 71.2 49 69.4
HPP92_021692 Vanilla planifolia HOM05D005415 ORTHO05D006242 8.1e-10 69.7 71 53.5
SMO146G0197 Selaginella moellendorffii HOM05D025663 ORTHO05D006242 1.1e-09 69.3 103 41.7
Medtr1g071270 Medicago truncatula HOM05D005415 ORTHO05D006242 2.4e-09 68.2 107 39.3
Cre16.g653000 Chlamydomonas reinhardtii HOM05D006752 ORTHO05D008597 9.0e-09 66.2 124 34.7
PSO063G6394 Papaver somniferum HOM05D005415 ORTHO05D006242 9.0e-09 66.2 56 62.5
Nn8g39294 Nelumbo nucifera HOM05D006752 ORTHO05D008597 1.5e-08 65.5 225 27.1
PSO017G3192 Papaver somniferum HOM05D005415 ORTHO05D006242 1.5e-08 65.5 76 46.1
Phvul.009G200000 Phaseolus vulgaris HOM05D006752 ORTHO05D008597 2.2e-07 61.6 170 31.2
Manes.03G066500 Manihot esculenta HOM05D006752 ORTHO05D008597 6.4e-07 60.1 122 34.4
PSO013G0019 Papaver somniferum HOM05D005415 ORTHO05D006242 6.4e-07 60.1 133 34.6
FAN26G3101 Fragaria x ananassa HOM05D006752 ORTHO05D008597 1.4e-06 58.9 234 26.5
PSO782G3782 Papaver somniferum HOM05D006752 ORTHO05D008597 1.4e-06 58.9 123 33.3
CARHR192900 Cardamine hirsuta HOM05D006752 ORTHO05D008597 1.9e-06 58.5 122 31.1
Eucgr.C01084 Eucalyptus grandis HOM05D006752 ORTHO05D008597 1.9e-06 58.5 135 33.3
CSS0031481 Camellia sinensis var. sinensis HOM05D005415 ORTHO05D006242 2.4e-06 58.2 45 62.2
CiPaw.04G167500 Carya illinoinensis HOM05D006752 ORTHO05D008597 2.4e-06 58.2 182 28.0
FAN28G1533 Fragaria x ananassa HOM05D006752 ORTHO05D008597 3.2e-06 57.8 234 26.5
Medtr1g069490 Medicago truncatula HOM05D000559 ORTHO05D000596 4.2e-06 57.4 57 50.9
PGR142G0135 Punica granatum HOM05D006752 ORTHO05D008597 5.5e-06 57.0 134 29.9
FvH4_1g04220 Fragaria vesca HOM05D006752 ORTHO05D008597 7.1e-06 56.6 233 25.8
Hma1.2p1_0018F.1_g013060 Hydrangea macrophylla HOM05D006752 ORTHO05D008597 7.1e-06 56.6 97 37.1
Lj7C639G3 Lonicera japonica HOM05D006752 ORTHO05D008597 7.1e-06 56.6 230 25.7
TWI34G0637 Tripterygium wilfordii HOM05D006752 ORTHO05D008597 9.3e-06 56.2 225 25.8


User provided reference genes

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