Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv10789 Davidia involucrata HOM05D004315 ORTHO05D005089 1.8e-187 659.1 327 100.0
vmacro03380 Vaccinium macrocarpon HOM05D004315 ORTHO05D005089 2.9e-153 545.4 336 81.5
CSS0023242 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 6.7e-150 534.3 332 79.2
TAR629G1010 Trochodendron aralioides HOM05D004315 ORTHO05D005089 1.8e-147 526.2 326 81.0
Dinv05044 Davidia involucrata HOM05D004315 ORTHO05D005089 3.5e-146 521.9 324 80.2
TWI14G0586 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 1.0e-145 520.4 325 79.7
MBI18_g11296_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 8.5e-145 517.3 327 79.2
Rhsim13G0121900 Rhododendron simsii HOM05D004315 ORTHO05D005089 2.5e-144 515.8 362 74.3
Lj2A329G54 Lonicera japonica HOM05D004315 ORTHO05D005089 3.2e-144 515.4 317 81.1
Cfa000809 Carpinus fangiana HOM05D004315 ORTHO05D005089 4.2e-144 515.0 328 79.9
GSVIVG01020802001 Vitis vinifera HOM05D004315 ORTHO05D005089 2.1e-143 512.7 326 78.5
Aqoxy1G01576 Aquilegia oxysepala HOM05D004315 ORTHO05D005089 2.7e-143 512.3 326 80.1
Ciclev10031991m.g Citrus clementina HOM05D004315 ORTHO05D005089 2.7e-143 512.3 324 78.1
Thecc.01G165100 Theobroma cacao HOM05D004315 ORTHO05D005089 8.0e-143 510.8 325 78.8
Hma1.2p1_0583F.1_g183050 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 1.0e-142 510.4 324 78.1
PGR031G0720 Punica granatum HOM05D004315 ORTHO05D005089 2.3e-142 509.2 327 79.2
CSS0039894 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 3.0e-142 508.8 325 76.9
Atru.chr10.841 Acer truncatum HOM05D004315 ORTHO05D005089 5.2e-142 508.1 330 78.2
Gohir.A05G380500 Gossypium hirsutum HOM05D004315 ORTHO05D005089 8.8e-142 507.3 325 78.8
Duzib264G0097 Durio zibethinus HOM05D004315 ORTHO05D005089 1.5e-141 506.5 325 78.5
Oeu015176.1 Olea europaea HOM05D004315 ORTHO05D005089 1.5e-141 506.5 308 82.5
MD09G1144800 Malus domestica HOM05D004315 ORTHO05D005089 2.0e-141 506.1 326 77.3
MD17G1131300 Malus domestica HOM05D004315 ORTHO05D005089 2.0e-141 506.1 326 77.0
CiPaw.10G109400 Carya illinoinensis HOM05D004315 ORTHO05D005089 2.6e-141 505.8 332 75.6
Eucgr.A00888 Eucalyptus grandis HOM05D004315 ORTHO05D005089 2.6e-141 505.8 328 76.8
Gorai.012G039600 Gossypium raimondii HOM05D004315 ORTHO05D005089 2.6e-141 505.8 325 78.5
PSO675G7088 Papaver somniferum HOM05D004315 ORTHO05D005089 4.4e-141 505.0 327 78.0
CANSAT64G0449 Cannabis sativa HOM05D004315 ORTHO05D005089 1.3e-140 503.4 326 78.8
Potri.014G143500 Populus trichocarpa HOM05D004315 ORTHO05D005089 1.3e-140 503.4 325 76.6
TWI59G1372 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 1.3e-140 503.4 325 77.2
FvH4_6g39150 Fragaria vesca HOM05D004315 ORTHO05D005089 1.7e-140 503.1 326 77.0
FAN14G1093 Fragaria x ananassa HOM05D004315 ORTHO05D005089 1.7e-140 503.1 326 77.0
Gohir.D04G035100 Gossypium hirsutum HOM05D004315 ORTHO05D005089 1.7e-140 503.1 324 78.4
Potri.011G164500 Populus trichocarpa HOM05D004315 ORTHO05D005089 1.7e-140 503.1 315 80.0
PSO541G6471 Papaver somniferum HOM05D004315 ORTHO05D005089 2.8e-140 502.3 326 77.6
Prupe.3G183100 Prunus persica HOM05D004315 ORTHO05D005089 2.8e-140 502.3 326 76.4
GSVIVG01021661001 Vitis vinifera HOM05D004315 ORTHO05D005089 2.8e-140 502.3 327 78.0
FAN05G3231 Fragaria x ananassa HOM05D004315 ORTHO05D005089 3.7e-140 501.9 326 76.7
RcHm_v2.0_Chr2g0152961 Rosa chinensis HOM05D004315 ORTHO05D005089 6.3e-140 501.1 326 77.0
ATR0165G021 Amborella trichopoda HOM05D004315 ORTHO05D005089 1.8e-139 499.6 310 79.7
Cpa.g.sc1123.2 Carica papaya HOM05D004315 ORTHO05D005089 1.8e-139 499.6 332 75.6
Potri.001G466900 Populus trichocarpa HOM05D004315 ORTHO05D005089 1.8e-139 499.6 315 79.7
Cc09_g07890 Coffea canephora HOM05D004315 ORTHO05D005089 5.3e-139 498.0 309 79.0
Nn3g20219 Nelumbo nucifera HOM05D004315 ORTHO05D005089 5.3e-139 498.0 326 77.3
MBI02_g32064_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 7.0e-139 497.7 310 79.4
Nitab4.5_0011274g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 1.6e-138 496.5 311 80.1
Sopen07g023340 Solanum pennellii HOM05D004315 ORTHO05D005089 3.5e-138 495.4 330 76.1
arahy.Tifrunner.gnm1.ann1.8V1VF7 Arachis hypogaea HOM05D004315 ORTHO05D005089 4.5e-138 495.0 330 74.5
Oeu041105.1 Olea europaea HOM05D004315 ORTHO05D005089 4.5e-138 495.0 318 77.0
CiPaw.03G190700 Carya illinoinensis HOM05D004315 ORTHO05D005089 1.7e-137 493.0 327 76.1
Solyc07g044750.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 2.2e-137 492.7 330 75.8
Glyma.02G281300 Glycine max HOM05D004315 ORTHO05D005089 8.5e-137 490.7 328 75.6
SalBow8G0183 Salvia bowleyana HOM05D004315 ORTHO05D005089 8.5e-137 490.7 313 77.3
Nitab4.5_0001843g0170 Nicotiana tabacum HOM05D004315 ORTHO05D005089 1.5e-136 490.0 332 74.4
Nitab4.5_0000076g0250 Nicotiana tabacum HOM05D004315 ORTHO05D005089 2.5e-136 489.2 311 78.8
arahy.Tifrunner.gnm1.ann1.VQL6P1 Arachis hypogaea HOM05D004315 ORTHO05D005089 3.2e-136 488.8 337 73.0
MSTRG.16294 Avicennia marina HOM05D004315 ORTHO05D005089 3.2e-136 488.8 309 79.0
Nitab4.5_0006724g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 3.2e-136 488.8 330 74.8
Solyc02g023980.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 7.2e-136 487.6 313 78.3
DCAR_013332 Daucus carota HOM05D004315 ORTHO05D005089 2.7e-135 485.7 328 73.8
PGSC0003DMG400021156 Solanum tuberosum HOM05D004315 ORTHO05D005089 2.7e-135 485.7 338 73.7
PGSC0003DMG401028079 Solanum tuberosum HOM05D004315 ORTHO05D005089 2.7e-135 485.7 313 78.3
HanXRQChr01g0023901 Helianthus annuus HOM05D004315 ORTHO05D005089 8.0e-135 484.2 328 73.2
CAN.G304.4 Capsicum annuum HOM05D004315 ORTHO05D005089 1.0e-134 483.8 312 78.2
Oeu044867.2 Olea europaea HOM05D004315 ORTHO05D005089 1.0e-134 483.8 358 70.9
CAN.G1316.2 Capsicum annuum HOM05D004315 ORTHO05D005089 1.8e-134 483.0 330 73.9
Peaxi162Scf00351g00818 Petunia axillaris HOM05D004315 ORTHO05D005089 1.8e-134 483.0 328 74.1
Sabra16G0316700 Salix brachista HOM05D004315 ORTHO05D005089 1.8e-134 483.0 338 73.4
Sabra14G0108500 Salix brachista HOM05D004315 ORTHO05D005089 2.3e-134 482.6 340 72.4
Migut.M01899 Erythranthe guttata HOM05D004315 ORTHO05D005089 3.0e-134 482.3 317 75.7
LjContig00049g0028236 Lotus japonicus HOM05D004315 ORTHO05D005089 3.0e-134 482.3 328 73.2
Psat2g018080 Pisum sativum HOM05D004315 ORTHO05D005089 5.2e-134 481.5 328 74.4
DCAR_007839 Daucus carota HOM05D004315 ORTHO05D005089 1.2e-133 480.3 325 76.3
Lsat_1_v5_gn_1_91760 Lactuca sativa HOM05D004315 ORTHO05D005089 2.0e-133 479.6 321 75.1
ClCG07G010830 Citrullus lanatus HOM05D004315 ORTHO05D005089 2.6e-133 479.2 328 73.8
Medtr5g090130 Medicago truncatula HOM05D004315 ORTHO05D005089 7.5e-133 477.6 326 73.9
Cc05_g00540 Coffea canephora HOM05D004315 ORTHO05D005089 1.7e-132 476.5 339 72.6
TPR.G24734 Trifolium pratense HOM05D004315 ORTHO05D005089 2.2e-132 476.1 332 72.6
CDE05G3605 Ceratophyllum demersum HOM05D003391 ORTHO05D005563 4.8e-132 474.9 329 73.3
MELO3C026388.2 Cucumis melo HOM05D004315 ORTHO05D005089 6.3e-132 474.6 326 73.3
Sabra11G0140700 Salix brachista HOM05D004315 ORTHO05D005089 8.3e-132 474.2 352 71.6
Lalb_Chr10g0106401 Lupinus albus HOM05D004315 ORTHO05D005089 1.1e-131 473.8 324 73.5
ECA248G0068 Erigeron canadensis HOM05D004315 ORTHO05D005089 1.4e-131 473.4 328 72.3
MELO3C016194.2 Cucumis melo HOM05D004315 ORTHO05D005089 4.1e-131 471.9 331 72.8
HanXRQChr04g0115031 Helianthus annuus HOM05D004315 ORTHO05D005089 7.0e-131 471.1 332 70.8
Lsat_1_v5_gn_2_30700 Lactuca sativa HOM05D004315 ORTHO05D005089 1.2e-130 470.3 322 73.3
Sed0001791 Sechium edule HOM05D004315 ORTHO05D005089 2.0e-130 469.5 333 71.8
HanXRQChr14g0432981 Helianthus annuus HOM05D004315 ORTHO05D005089 3.5e-130 468.8 331 70.4
VMungo0647G0619 Vigna mungo HOM05D004315 ORTHO05D005089 5.9e-130 468.0 327 72.2
Carub.0001s2880 Capsella rubella HOM05D004315 ORTHO05D005089 1.3e-129 466.8 322 73.3
COL.COLO4_29897 Corchorus olitorius HOM05D004315 ORTHO05D005089 1.3e-129 466.8 290 80.3
AT1G30540 Arabidopsis thaliana HOM05D004315 ORTHO05D005089 2.3e-129 466.1 317 73.5
CsaV3_4G007480 Cucumis sativus L. HOM05D004315 ORTHO05D005089 2.3e-129 466.1 331 71.6
BcaB07g32690 Brassica carinata HOM05D004315 ORTHO05D005089 3.8e-129 465.3 316 73.4
CANSAT35G0713 Cannabis sativa HOM05D004315 ORTHO05D005089 3.8e-129 465.3 315 74.6
Migut.H01268 Erythranthe guttata HOM05D004315 ORTHO05D005089 5.0e-129 464.9 330 70.6
Phvul.008G199600 Phaseolus vulgaris HOM05D004315 ORTHO05D005089 5.0e-129 464.9 327 72.5
Peaxi162Scf00395g00318 Petunia axillaris HOM05D004315 ORTHO05D005089 8.6e-129 464.2 312 76.3
BcaC05g27075 Brassica carinata HOM05D004315 ORTHO05D005089 1.1e-128 463.8 315 72.7
AL1G44580 Arabidopsis lyrata HOM05D004315 ORTHO05D005089 1.9e-128 463.0 315 73.7
Aa31LG10G6590 Aethionema arabicum HOM05D004315 ORTHO05D005089 2.5e-128 462.6 319 70.8
Thhalv10008046m.g Eutrema salsugineum HOM05D004315 ORTHO05D005089 4.2e-128 461.8 315 73.0
Sp1g26410 Schrenkiella parvula HOM05D004315 ORTHO05D005089 5.5e-128 461.5 316 72.5
SGA_v2.0_scaffold223G42867 Striga asiatica HOM05D004315 ORTHO05D005089 9.5e-128 460.7 348 67.5
Lj1A584G30 Lonicera japonica HOM05D004315 ORTHO05D005089 1.2e-127 460.3 338 69.8
C05p29560 Brassica napus HOM05D004315 ORTHO05D005089 2.1e-127 459.5 316 72.5
BolC5t31687H Brassica oleracea HOM05D004315 ORTHO05D005089 2.8e-127 459.1 316 72.5
CARHR029950 Cardamine hirsuta HOM05D004315 ORTHO05D005089 2.8e-127 459.1 315 72.1
SEGI_10868 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 4.7e-127 458.4 326 71.8
THA.LOC104798598 Tarenaya hassleriana HOM05D004315 ORTHO05D005089 4.7e-127 458.4 348 68.1
A09p35900 Brassica napus HOM05D004315 ORTHO05D005089 8.0e-127 457.6 318 71.7
Ah.09g232250 Amaranthus hybridus HOM05D004315 ORTHO05D005089 1.0e-126 457.2 314 71.3
BraA09t39115Z Brassica rapa HOM05D004315 ORTHO05D005089 4.0e-126 455.3 318 71.4
Actinidia12522 Actinidia chinensis HOM05D004315 ORTHO05D005089 8.9e-126 454.1 327 72.5
ClCG11G016660 Citrullus lanatus HOM05D004315 ORTHO05D005089 5.7e-125 451.4 381 63.0
Os07g0147700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 5.7e-125 451.4 323 71.2
Zm00001eb299940 Zea mays HOM05D004315 ORTHO05D005089 8.3e-124 447.6 322 69.9
unitig_37.g12072 Utricularia gibba HOM05D004315 ORTHO05D005089 1.4e-123 446.8 317 69.7
Os09g0133700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 1.3e-121 440.3 322 70.2
HPP92_005880 Vanilla planifolia HOM05D004315 ORTHO05D005089 1.9e-120 436.4 310 69.7
BcaB07g32692 Brassica carinata HOM05D004315 ORTHO05D005089 2.5e-120 436.0 300 73.7
Zm00001eb261810 Zea mays HOM05D004315 ORTHO05D005089 5.6e-120 434.9 325 68.6
SHI10516 Sapria himalayana HOM05D004315 ORTHO05D005089 4.7e-119 431.8 321 67.9
Duzib147G0966 Durio zibethinus HOM05D004315 ORTHO05D005089 4.9e-116 421.8 325 67.7
QL05p061983 Quercus lobata HOM05D004315 ORTHO05D005089 4.9e-116 421.8 516 48.8
Manes.02G090600 Manihot esculenta HOM05D004315 ORTHO05D005089 1.4e-115 420.2 247 83.4
Atru.chr6.2011 Acer truncatum HOM05D004315 ORTHO05D005089 1.9e-115 419.9 268 78.7
Sed0020733 Sechium edule HOM05D004315 ORTHO05D005089 1.2e-111 407.1 281 75.1
BcaB07g32666 Brassica carinata HOM05D004315 ORTHO05D005089 2.1e-106 389.8 263 73.8
Glyma.14G033300 Glycine max HOM05D004315 ORTHO05D005089 1.9e-104 383.3 248 77.4
CsaV3_4G032170 Cucumis sativus L. HOM05D004315 ORTHO05D005089 4.3e-104 382.1 326 62.0
Hma1.2p1_0067F.1_g036960 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 3.9e-97 359.0 207 87.0
Manes.14G123700 Manihot esculenta HOM05D004315 ORTHO05D005089 6.6e-97 358.2 241 72.2
Actinidia01578 Actinidia chinensis HOM05D004315 ORTHO05D005089 2.8e-95 352.8 224 80.4
Mapoly0122s0046 Marchantia polymorpha HOM05D004315 ORTHO05D005089 1.7e-92 343.6 327 53.5
SMO334G0132 Selaginella moellendorffii HOM05D004315 ORTHO05D005089 1.1e-91 340.9 321 54.2
Haze_05859 Corylus avellana HOM05D004315 ORTHO05D005089 1.5e-88 330.5 260 67.7
Haze_05864 Corylus avellana HOM05D004315 ORTHO05D005089 4.3e-88 328.9 260 67.3
Sc10g0005420 Simmondsia chinensis HOM05D004315 ORTHO05D005089 5.8e-85 318.5 225 73.3
Lsat_1_v5_gn_1_77721 Lactuca sativa HOM05D004315 ORTHO05D005089 1.7e-84 317.0 214 73.8
Pp3c17_6390 Physcomitrium patens HOM05D004315 ORTHO05D005089 7.1e-83 311.6 278 57.2
Sopen02g006690 Solanum pennellii HOM05D004315 ORTHO05D005089 9.6e-80 301.2 185 81.1
Cfa023542 Carpinus fangiana HOM05D004315 ORTHO05D005089 1.0e-73 281.2 184 75.5
Haze_13622 Corylus avellana HOM05D004315 ORTHO05D005089 2.8e-71 273.1 163 83.4
CBR_g20100 Chara braunii HOM05D004315 ORTHO05D005089 3.3e-64 249.6 371 39.9
Hund21564 Selenicereus undatus HOM05D004315 ORTHO05D005089 2.4e-62 243.4 180 68.3
QL05p062039 Quercus lobata HOM05D004315 ORTHO05D005089 8.4e-60 235.0 144 80.6
Actinidia33709 Actinidia chinensis HOM05D004315 ORTHO05D005089 2.5e-59 233.4 147 78.2
Zm00001eb058170 Zea mays HOM05D004315 ORTHO05D005089 5.5e-59 232.3 178 68.0
Hund21563 Selenicereus undatus HOM05D004315 ORTHO05D005089 3.4e-53 213.0 144 72.9
AagrBONN_evm.TU.Sc2ySwM_117.2193 Anthoceros agrestis HOM05D004315 ORTHO05D005089 2.2e-52 210.3 270 45.9
Manes.01G131701 Manihot esculenta HOM05D004315 ORTHO05D005089 1.0e-49 201.4 138 73.9
PRCOL_00003495 Prasinoderma coloniale HOM05D004315 ORTHO05D005089 2.3e-41 173.7 287 41.5
TPR.G1178 Trifolium pratense HOM05D003586 ORTHO05D004036 7.4e-40 168.7 146 58.9
Manes.01G131702 Manihot esculenta HOM05D004315 ORTHO05D005089 1.4e-30 137.9 94 71.3
SEGI_40766 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 7.0e-30 135.6 125 55.2
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 2.2e-28 130.6 258 34.5
MCO07G054 Micromonas commoda HOM05D004315 ORTHO05D005089 2.3e-25 120.6 338 32.2
QL04p059944 Quercus lobata HOM05D004315 ORTHO05D005089 3.0e-25 120.2 63 90.5
Cre17.g720528 Chlamydomonas reinhardtii HOM05D004315 ORTHO05D005089 8.8e-25 118.6 239 32.6
SEGI_21833 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 1.8e-22 110.9 206 36.4
DCAR_009744 Daucus carota HOM05D004315 ORTHO05D018839 8.0e-18 95.5 92 55.4
Hma1.2p1_0067F.1_g036930 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 2.3e-17 94.0 57 78.9
Cfa023541 Carpinus fangiana HOM05D004315 ORTHO05D005089 3.7e-15 86.7 56 78.6
Ah.03g146620 Amaranthus hybridus HOM05D004315 ORTHO05D005089 1.7e-12 77.8 57 61.4
Atru.chr6.2012 Acer truncatum HOM05D004315 ORTHO05D005089 2.8e-10 70.5 45 66.7
TAR624G0620 Trochodendron aralioides HOM05D004315 ORTHO05D005089 4.0e-09 66.6 46 60.9
CDE04G1567 Ceratophyllum demersum HOM05D001307 ORTHO05D005089 8.9e-09 65.5 135 37.8
Gohir.D08G092932 Gossypium hirsutum HOM05D004315 ORTHO05D217518 4.1e-06 56.6 58 53.4


User provided reference genes

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