Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv10579 Davidia involucrata HOM05D003384 ORTHO05D005024 6.7e-309 1063.1 528 100.0
Dinv42277 Davidia involucrata HOM05D003384 ORTHO05D005024 8.9e-261 903.3 469 94.0
Actinidia02926 Actinidia chinensis HOM05D003384 ORTHO05D005024 4.7e-246 854.4 469 89.8
Thecc.05G055600 Theobroma cacao HOM05D003384 ORTHO05D005024 7.6e-244 847.0 469 87.0
CSS0027778 Camellia sinensis var. sinensis HOM05D003384 ORTHO05D005024 6.4e-243 844.0 469 87.8
Rhsim08G0242600 Rhododendron simsii HOM05D003384 ORTHO05D005024 8.4e-243 843.6 469 86.8
COL.COLO4_27063 Corchorus olitorius HOM05D003384 ORTHO05D005024 1.9e-242 842.4 469 86.8
Gorai.009G419700 Gossypium raimondii HOM05D003384 ORTHO05D005024 2.4e-242 842.0 469 86.4
CSS0047277 Camellia sinensis var. sinensis HOM05D003384 ORTHO05D005024 5.4e-242 840.9 469 87.4
Duzib093G0913 Durio zibethinus HOM05D003384 ORTHO05D005024 7.1e-242 840.5 469 86.8
Gohir.D04G115100 Gossypium hirsutum HOM05D003384 ORTHO05D005024 1.6e-241 839.3 469 85.7
Rhsim10G0184100 Rhododendron simsii HOM05D003384 ORTHO05D005024 6.0e-241 837.4 469 86.8
Lj1C941G12 Lonicera japonica HOM05D003384 ORTHO05D005024 6.6e-240 833.9 469 86.8
QL08p061129 Quercus lobata HOM05D003384 ORTHO05D005024 8.7e-240 833.6 469 85.3
Manes.10G027300 Manihot esculenta HOM05D003384 ORTHO05D005024 2.5e-239 832.0 469 85.3
Gohir.A04G076000 Gossypium hirsutum HOM05D003384 ORTHO05D005024 4.3e-239 831.2 469 85.3
Potri.010G200200 Populus trichocarpa HOM05D003384 ORTHO05D005024 9.6e-239 830.1 469 85.1
Prupe.8G024000 Prunus persica HOM05D003384 ORTHO05D005024 1.1e-237 826.6 469 85.5
TWI18G1054 Tripterygium wilfordii HOM05D003384 ORTHO05D005024 1.1e-237 826.6 469 84.4
Sabra10G0154400 Salix brachista HOM05D003384 ORTHO05D005024 5.3e-237 824.3 469 83.8
FAN08G1276 Fragaria x ananassa HOM05D003384 ORTHO05D005024 1.2e-236 823.2 469 85.5
MD03G1203100 Malus domestica HOM05D003384 ORTHO05D005024 2.6e-236 822.0 469 84.4
Prupe.1G542100 Prunus persica HOM05D003384 ORTHO05D005024 2.6e-236 822.0 469 85.3
TAR633G2052 Trochodendron aralioides HOM05D003384 ORTHO05D005024 4.5e-236 821.2 469 84.2
DCAR_011724 Daucus carota HOM05D003384 ORTHO05D005024 7.6e-236 820.5 469 84.9
MD04G1022300 Malus domestica HOM05D003384 ORTHO05D005024 7.6e-236 820.5 469 84.2
FAN13G0754 Fragaria x ananassa HOM05D003384 ORTHO05D005024 9.9e-236 820.1 469 85.3
Gohir.A06G008900 Gossypium hirsutum HOM05D003384 ORTHO05D005024 9.9e-236 820.1 468 84.4
FvH4_5g19530 Fragaria vesca HOM05D003384 ORTHO05D005024 3.8e-235 818.1 469 85.1
FAN18G2272 Fragaria x ananassa HOM05D003384 ORTHO05D005024 3.8e-235 818.1 469 85.1
FAN18G2911 Fragaria x ananassa HOM05D003384 ORTHO05D005024 3.8e-235 818.1 469 85.1
Peaxi162Scf00668g00439 Petunia axillaris HOM05D003384 ORTHO05D005024 4.9e-235 817.8 469 84.4
Haze_17110 Corylus avellana HOM05D003384 ORTHO05D005024 8.4e-235 817.0 469 84.2
CiPaw.01G290900 Carya illinoinensis HOM05D003384 ORTHO05D005024 1.1e-234 816.6 469 84.2
Cfa001433 Carpinus fangiana HOM05D003384 ORTHO05D005024 1.4e-234 816.2 469 83.6
FAN04G2139 Fragaria x ananassa HOM05D003384 ORTHO05D005024 1.9e-234 815.8 469 84.9
RcHm_v2.0_Chr7g0204141 Rosa chinensis HOM05D003384 ORTHO05D005024 4.2e-234 814.7 469 84.4
Nitab4.5_0000333g0100 Nicotiana tabacum HOM05D003384 ORTHO05D005024 5.4e-234 814.3 469 84.0
Nitab4.5_0001169g0010 Nicotiana tabacum HOM05D003384 ORTHO05D005024 1.2e-233 813.1 469 83.8
Eucgr.I00206 Eucalyptus grandis HOM05D003384 ORTHO05D005024 3.5e-233 811.6 469 83.2
Ciclev10030516m.g Citrus clementina HOM05D003384 ORTHO05D005024 1.0e-232 810.1 469 84.0
Glyma.18G036300 Glycine max HOM05D003384 ORTHO05D005024 3.0e-232 808.5 469 83.6
Lj6g0002532 Lotus japonicus HOM05D003384 ORTHO05D005024 3.0e-232 808.5 469 83.2
Lj8C80T4 Lonicera japonica HOM05D003384 ORTHO05D005024 3.9e-232 808.1 469 84.4
arahy.Tifrunner.gnm1.ann1.Z31J18 Arachis hypogaea HOM05D003384 ORTHO05D005024 5.1e-232 807.7 469 83.8
Cfa014646 Carpinus fangiana HOM05D003384 ORTHO05D005024 8.7e-232 807.0 469 82.7
CsaV3_5G010490 Cucumis sativus L. HOM05D003384 ORTHO05D005024 1.9e-231 805.8 469 82.3
ClCG07G004540 Citrullus lanatus HOM05D003384 ORTHO05D005024 2.5e-231 805.4 469 82.5
Glyma.11G221100 Glycine max HOM05D003384 ORTHO05D005024 3.3e-231 805.1 469 83.2
Lj2g0004466 Lotus japonicus HOM05D003384 ORTHO05D005024 1.3e-230 803.1 469 82.3
Sc09g0005970 Simmondsia chinensis HOM05D003384 ORTHO05D005024 1.6e-230 802.7 469 82.3
Cc07_g16480 Coffea canephora HOM05D003384 ORTHO05D005024 2.1e-230 802.4 514 77.4
PGSC0003DMG400010235 Solanum tuberosum HOM05D003384 ORTHO05D005024 4.8e-230 801.2 469 82.9
MELO3C018382.2 Cucumis melo HOM05D003384 ORTHO05D005024 3.1e-229 798.5 469 81.9
Oeu001502.2 Olea europaea HOM05D003384 ORTHO05D005024 4.0e-229 798.1 470 82.6
Sopen02g021650 Solanum pennellii HOM05D003384 ORTHO05D005024 4.0e-229 798.1 469 82.7
Solyc02g076720.3 Solanum lycopersicum HOM05D003384 ORTHO05D005024 5.3e-229 797.7 469 82.5
Lalb_Chr15g0084621 Lupinus albus HOM05D003384 ORTHO05D005024 1.5e-228 796.2 469 82.5
Lalb_Chr18g0053121 Lupinus albus HOM05D003384 ORTHO05D005024 3.4e-228 795.0 469 81.9
CAN.G370.86 Capsicum annuum HOM05D003384 ORTHO05D005024 5.8e-228 794.3 469 82.3
Medtr6g011360 Medicago truncatula HOM05D003384 ORTHO05D005024 1.7e-227 792.7 469 81.0
PSO837G0041 Papaver somniferum HOM05D003384 ORTHO05D005024 2.2e-227 792.3 469 81.4
Psat7g023040 Pisum sativum HOM05D003384 ORTHO05D005024 3.8e-227 791.6 469 80.4
TPR.G25489 Trifolium pratense HOM05D003384 ORTHO05D005024 6.4e-227 790.8 469 80.6
Medtr8g100045 Medicago truncatula HOM05D003384 ORTHO05D005024 8.4e-227 790.4 469 80.8
VMungo1309G0201 Vigna mungo HOM05D003384 ORTHO05D005024 8.4e-227 790.4 469 81.0
Ca_17447_v3 Cicer arietinum L. HOM05D003384 ORTHO05D005024 1.4e-226 789.6 469 80.8
Ca_30022_v3 Cicer arietinum L. HOM05D003384 ORTHO05D005024 1.4e-226 789.6 469 80.8
Sed0002627 Sechium edule HOM05D003384 ORTHO05D005024 4.2e-226 788.1 469 80.4
Cc04_g11240 Coffea canephora HOM05D003384 ORTHO05D005024 5.5e-226 787.7 469 81.4
Phvul.009G004700 Phaseolus vulgaris HOM05D003384 ORTHO05D005024 5.5e-226 787.7 469 81.0
PGSC0003DMG400025849 Solanum tuberosum HOM05D003384 ORTHO05D005024 5.5e-226 787.7 468 82.1
PGR004G0663 Punica granatum HOM05D003384 ORTHO05D005024 7.1e-226 787.3 470 80.4
MBI14_g11677_MAGBIO Magnolia biondii HOM05D003384 ORTHO05D005024 9.3e-226 786.9 469 81.0
Phvul.001G234500 Phaseolus vulgaris HOM05D003384 ORTHO05D005024 1.2e-225 786.6 469 80.6
SalBow6G5425 Salvia bowleyana HOM05D003384 ORTHO05D005024 2.7e-225 785.4 470 79.8
THA.LOC104816583 Tarenaya hassleriana HOM05D003384 ORTHO05D005024 3.5e-225 785.0 469 79.3
VMungo1383G2986 Vigna mungo HOM05D003384 ORTHO05D005024 4.6e-225 784.6 469 81.0
Migut.F00756 Erythranthe guttata HOM05D003384 ORTHO05D005024 6.7e-224 780.8 470 81.3
SalBow6G5500 Salvia bowleyana HOM05D003384 ORTHO05D005024 8.7e-224 780.4 470 80.2
Aa31LG7G13860 Aethionema arabicum HOM05D003384 ORTHO05D005024 2.5e-223 778.9 465 80.6
Aqoxy1G00556 Aquilegia oxysepala HOM05D003384 ORTHO05D005024 2.5e-223 778.9 469 80.4
Aqoxy5G02953 Aquilegia oxysepala HOM05D003384 ORTHO05D005024 3.3e-223 778.5 469 80.2
PSO478G4441 Papaver somniferum HOM05D003384 ORTHO05D005024 5.6e-223 777.7 469 80.2
PSO782G4051 Papaver somniferum HOM05D003384 ORTHO05D005024 1.6e-222 776.2 469 80.4
EL10Ac2g04005 Beta vulgaris HOM05D003384 ORTHO05D005024 3.7e-222 775.0 469 79.3
Thhalv10018011m.g Eutrema salsugineum HOM05D003384 ORTHO05D005024 5.3e-221 771.2 469 79.1
AL2G34140 Arabidopsis lyrata HOM05D003384 ORTHO05D005024 1.2e-220 770.0 470 80.2
SGA_v2.0_scaffold2G01034 Striga asiatica HOM05D003384 ORTHO05D005024 2.0e-220 769.2 469 79.3
Carub.0002s2105 Capsella rubella HOM05D003384 ORTHO05D005024 5.8e-220 767.7 470 79.8
Sp5g29440 Schrenkiella parvula HOM05D003384 ORTHO05D005024 5.8e-220 767.7 470 79.4
A07p29480 Brassica napus HOM05D003384 ORTHO05D005024 7.6e-220 767.3 471 78.6
BraA07t31553Z Brassica rapa HOM05D003384 ORTHO05D005024 1.3e-219 766.5 471 78.8
BraA07t30586Z Brassica rapa HOM05D003384 ORTHO05D005024 1.7e-219 766.1 471 78.6
AT1G74260 Arabidopsis thaliana HOM05D003384 ORTHO05D005024 2.2e-219 765.8 470 79.6
AUR62002272 Chenopodium quinoa HOM05D003384 ORTHO05D005024 2.9e-219 765.4 469 79.3
BcaC08g46858 Brassica carinata HOM05D003384 ORTHO05D005024 4.9e-219 764.6 471 78.6
BolC6t39873H Brassica oleracea HOM05D003384 ORTHO05D005024 4.9e-219 764.6 471 78.6
C06p48450 Brassica napus HOM05D003384 ORTHO05D005024 8.4e-219 763.8 471 78.6
A07p40090 Brassica napus HOM05D003384 ORTHO05D005024 1.1e-218 763.5 469 78.9
ClCG07G004570 Citrullus lanatus HOM05D003384 ORTHO05D005024 1.4e-218 763.1 469 78.0
CARHR067520 Cardamine hirsuta HOM05D003384 ORTHO05D005024 1.9e-218 762.7 470 79.1
C06p33470 Brassica napus HOM05D003384 ORTHO05D005024 2.5e-218 762.3 471 78.1
BolC6t38461H Brassica oleracea HOM05D003384 ORTHO05D005024 2.5e-218 762.3 471 78.1
Hund07041 Selenicereus undatus HOM05D003384 ORTHO05D005024 5.5e-218 761.1 469 78.7
Ah.03g145450 Amaranthus hybridus HOM05D003384 ORTHO05D005024 7.1e-218 760.8 469 78.5
HanXRQChr05g0161141 Helianthus annuus HOM05D003384 ORTHO05D005024 2.1e-217 759.2 469 77.4
HanXRQChr08g0232581 Helianthus annuus HOM05D003384 ORTHO05D005024 2.5e-215 752.3 470 77.4
ECA246G5320 Erigeron canadensis HOM05D003384 ORTHO05D005024 3.3e-215 751.9 469 77.6
vmacro20478 Vaccinium macrocarpon HOM05D003384 ORTHO05D005024 3.3e-215 751.9 469 80.6
CAN.G606.41 Capsicum annuum HOM05D003384 ORTHO05D005024 4.1e-213 745.0 469 77.8
Lsat_1_v5_gn_6_96581 Lactuca sativa HOM05D003384 ORTHO05D005024 1.6e-209 733.0 469 75.3
unitig_0.g1015 Utricularia gibba HOM05D003384 ORTHO05D005024 6.1e-209 731.1 452 77.7
ATR0580G036 Amborella trichopoda HOM05D003384 ORTHO05D005024 5.1e-208 728.0 470 74.5
Os01g0888500 Oryza sativa ssp. japonica HOM05D003384 ORTHO05D005024 1.1e-207 726.9 469 75.9
Os05g0104650 Oryza sativa ssp. japonica HOM05D003384 ORTHO05D005024 1.5e-207 726.5 469 75.5
Zm00001eb055170 Zea mays HOM05D003384 ORTHO05D005024 2.5e-207 725.7 469 75.3
AUR62034627 Chenopodium quinoa HOM05D003384 ORTHO05D005024 2.8e-206 722.2 469 75.9
CDE05G0219 Ceratophyllum demersum HOM05D003384 ORTHO05D005024 1.4e-205 719.9 469 74.4
Zm00001eb067720 Zea mays HOM05D003384 ORTHO05D005024 6.9e-205 717.6 469 74.8
HPP92_005602 Vanilla planifolia HOM05D003384 ORTHO05D005024 1.3e-203 713.4 469 74.2
BcaC08g45597 Brassica carinata HOM05D003384 ORTHO05D005024 1.4e-202 709.9 469 74.8
SEGI_27631 Sequoiadendron giganteum HOM05D003384 ORTHO05D005024 7.2e-202 707.6 469 72.3
TPR.G18022 Trifolium pratense HOM05D003384 ORTHO05D005024 2.3e-200 702.6 469 73.3
Peaxi162Scf00685g00122 Petunia axillaris HOM05D003384 ORTHO05D005024 4.4e-199 698.4 403 85.4
SHI22710 Sapria himalayana HOM05D003384 ORTHO05D005024 8.2e-198 694.1 470 70.6
Hma1.2p1_0998F.1_g246010 Hydrangea macrophylla HOM05D003384 ORTHO05D005024 7.4e-191 671.0 469 72.3
TAR629G0479 Trochodendron aralioides HOM05D003384 ORTHO05D005024 9.4e-186 654.1 399 81.5
Mapoly0047s0031 Marchantia polymorpha HOM05D003384 ORTHO05D005024 4.7e-185 651.7 474 66.9
Pp3c6_8600 Physcomitrium patens HOM05D003384 ORTHO05D005024 4.7e-185 651.7 474 65.6
Solyc01g107270.4 Solanum lycopersicum HOM05D003384 ORTHO05D005024 3.0e-184 649.0 469 70.4
AUR62009268 Chenopodium quinoa HOM05D003384 ORTHO05D005024 4.1e-181 638.6 390 77.7
SMO358G0063 Selaginella moellendorffii HOM05D003384 ORTHO05D005024 8.3e-174 614.4 472 65.3
Sopen01g049520 Solanum pennellii HOM05D003384 ORTHO05D005024 1.1e-173 614.0 459 68.0
CBR_g19873 Chara braunii HOM05D003384 ORTHO05D005024 3.5e-172 609.0 474 63.1
GSVIVG01016499001 Vitis vinifera HOM05D003384 ORTHO05D005024 1.8e-165 586.6 332 88.3
Medtr3g085010 Medicago truncatula HOM05D003384 ORTHO05D005024 4.1e-165 585.5 469 63.3
SEGI_36858 Sequoiadendron giganteum HOM05D003384 ORTHO05D005024 2.5e-162 576.2 388 69.6
AUR62042439 Chenopodium quinoa HOM05D003384 ORTHO05D005024 6.1e-161 571.6 472 65.0
Cre08.g364800 Chlamydomonas reinhardtii HOM05D003384 ORTHO05D005024 1.2e-151 540.8 475 56.4
AagrBONN_evm.TU.Sc2ySwM_344.2607 Anthoceros agrestis HOM05D003384 ORTHO05D005024 5.4e-149 531.9 392 67.9
CDE05G1365 Ceratophyllum demersum HOM05D003384 ORTHO05D005024 7.1e-141 505.0 469 57.1
MCO14G233 Micromonas commoda HOM05D003384 ORTHO05D005024 1.0e-139 501.1 479 53.7
PRCOL_00000695 Prasinoderma coloniale HOM05D003384 ORTHO05D005024 3.1e-136 489.6 488 53.7
Cpa.g.c38225 Carica papaya HOM05D003384 ORTHO05D005024 2.0e-119 433.7 297 71.7
SalBow1G4952 Salvia bowleyana HOM05D003384 ORTHO05D005024 2.3e-75 287.3 196 71.9
Cfa023973 Carpinus fangiana HOM05D003384 ORTHO05D005024 3.0e-75 287.0 501 35.5
BcaB05g24847 Brassica carinata HOM05D003384 ORTHO05D005024 2.6e-74 283.9 193 73.1
Potri.008G058600 Populus trichocarpa HOM05D003384 ORTHO05D005024 8.3e-65 252.3 163 76.1
Haze_26202 Corylus avellana HOM05D003384 ORTHO05D005024 2.4e-64 250.8 580 33.8
SalBow2G3548 Salvia bowleyana HOM05D003384 ORTHO05D005024 3.3e-37 160.6 98 73.5
Sc09g0006010 Simmondsia chinensis HOM05D003384 ORTHO05D005024 4.9e-33 146.7 92 70.7
AUR62009267 Chenopodium quinoa HOM05D003384 ORTHO05D005024 6.2e-28 129.8 79 87.3
RcHm_v2.0_Chr7g0229191 Rosa chinensis HOM05D003384 ORTHO05D345115 2.1e-20 104.8 92 62.0
Actinidia19536 Actinidia chinensis HOM05D003384 ORTHO05D053833 1.8e-19 101.7 113 56.6
TAR629G1400 Trochodendron aralioides HOM05D003384 ORTHO05D005024 4.9e-17 93.6 51 78.4
Sabra08G0043100 Salix brachista HOM05D001467 ORTHO05D001447 2.4e-16 91.3 66 71.2
SMO199G0120 Selaginella moellendorffii HOM05D003384 ORTHO05D376227 7.1e-16 89.7 134 46.3
MD07G1195900 Malus domestica HOM05D003384 ORTHO05D005024 4.6e-15 87.0 113 47.8
SMO077G0006 Selaginella moellendorffii HOM05D003384 ORTHO05D018108 4.3e-13 80.5 149 42.3
BcaC03g15493 Brassica carinata HOM05D002057 ORTHO05D002231 1.6e-12 78.6 88 46.6
SMO353G0102 Selaginella moellendorffii HOM05D003384 ORTHO05D018108 1.6e-12 78.6 108 49.1
Medtr5g080480 Medicago truncatula HOM05D003384 ORTHO05D264199 3.6e-12 77.4 54 68.5
SMO009G0025 Selaginella moellendorffii HOM05D003384 ORTHO05D378488 1.4e-11 75.5 179 38.5
PSO063G2603 Papaver somniferum HOM05D008285 ORTHO05D010431 9.0e-11 72.8 62 59.7
PSO339G5238 Papaver somniferum HOM05D008285 ORTHO05D010431 1.2e-10 72.4 60 60.0
A02p19230 Brassica napus HOM05D003384 ORTHO05D032993 2.9e-09 67.8 37 73.0
C02p31820 Brassica napus HOM05D003384 ORTHO05D032993 2.9e-09 67.8 37 73.0
SMO360G0013 Selaginella moellendorffii HOM05D003384 ORTHO05D377588 3.8e-09 67.4 106 44.3
BolC2t09209H Brassica oleracea HOM05D003384 ORTHO05D032993 4.9e-09 67.0 36 75.0
DCAR_007785 Daucus carota HOM05D032355 ORTHO05D004109 4.6e-07 60.5 98 39.8
SMO036G0002 Selaginella moellendorffii HOM05D003384 ORTHO05D374652 4.6e-07 60.5 124 38.7
SMO112G0025 Selaginella moellendorffii HOM05D003384 ORTHO05D378420 4.6e-07 60.5 124 38.7
SMO149G0003 Selaginella moellendorffii HOM05D003384 ORTHO05D375727 5.1e-06 57.0 122 37.7
CAN.G426.19 Capsicum annuum HOM05D000212 ORTHO05D005509 8.7e-06 56.2 46 52.2


User provided reference genes

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