Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv09877 Davidia involucrata HOM05D003806 ORTHO05D004346 1.1e-301 1040.0 947 100.0
Dinv08951 Davidia involucrata HOM05D003806 ORTHO05D004346 1.1e-195 688.0 545 76.3
Manes.09G072900 Manihot esculenta HOM05D003806 ORTHO05D004346 7.4e-173 612.1 626 60.1
Haze_13639 Corylus avellana HOM05D003806 ORTHO05D004346 1.0e-166 591.7 624 60.6
TAR626G1670 Trochodendron aralioides HOM05D003806 ORTHO05D004346 7.4e-165 585.5 989 65.2
Cfa023525 Carpinus fangiana HOM05D003806 ORTHO05D004346 2.1e-164 583.9 624 61.2
Thecc.01G172500 Theobroma cacao HOM05D003806 ORTHO05D004346 5.8e-162 575.9 625 59.2
MD09G1138500 Malus domestica HOM05D003806 ORTHO05D004346 5.7e-157 559.3 945 62.5
TWI34G1284 Tripterygium wilfordii HOM05D003806 ORTHO05D004346 3.8e-153 546.6 623 54.7
QL04p061548 Quercus lobata HOM05D003806 ORTHO05D004346 8.5e-153 545.4 622 61.1
CiPaw.03G113300 Carya illinoinensis HOM05D003806 ORTHO05D004346 1.2e-151 541.6 600 57.2
Prupe.3G186800 Prunus persica HOM05D003806 ORTHO05D004346 2.1e-151 540.8 623 56.7
MD17G1128600 Malus domestica HOM05D003806 ORTHO05D004346 4.6e-151 539.7 624 56.1
COL.COLO4_33757 Corchorus olitorius HOM05D003806 ORTHO05D004346 1.5e-149 534.6 944 63.8
Duzib133G0409 Durio zibethinus HOM05D003806 ORTHO05D004346 6.3e-148 529.3 622 56.4
Ciclev10010914m.g Citrus clementina HOM05D003806 ORTHO05D004346 5.3e-147 526.2 621 59.6
Duzib138G1777 Durio zibethinus HOM05D003806 ORTHO05D004346 9.1e-147 525.4 621 55.6
Hma1.2p1_0401F.1_g144710 Hydrangea macrophylla HOM05D003806 ORTHO05D004346 1.5e-146 524.6 623 55.2
Cpa.g.sc8.294 Carica papaya HOM05D003806 ORTHO05D004346 1.0e-145 521.9 776 46.6
Gorai.001G093100 Gossypium raimondii HOM05D003806 ORTHO05D004346 7.2e-144 515.8 625 55.7
Gohir.D07G087100 Gossypium hirsutum HOM05D003806 ORTHO05D004346 3.9e-142 510.0 625 54.2
Gohir.A07G081500 Gossypium hirsutum HOM05D003806 ORTHO05D004346 8.8e-142 508.8 621 54.9
TWI60G0662 Tripterygium wilfordii HOM05D003806 ORTHO05D004346 8.8e-142 508.8 619 53.2
Lj1A1039T31 Lonicera japonica HOM05D003806 ORTHO05D004346 6.3e-140 502.7 942 60.0
GSVIVG01015817001 Vitis vinifera HOM05D003806 ORTHO05D004346 2.6e-138 497.3 688 48.8
Cc05_g00050 Coffea canephora HOM05D003806 ORTHO05D004346 4.8e-132 476.5 942 57.2
RcHm_v2.0_Chr2g0153621 Rosa chinensis HOM05D003806 ORTHO05D004346 2.4e-131 474.2 624 52.6
PGSC0003DMG400011753 Solanum tuberosum HOM05D003806 ORTHO05D004346 7.7e-130 469.2 618 49.2
CSS0010582 Camellia sinensis var. sinensis HOM05D003806 ORTHO05D004346 3.8e-129 466.8 945 62.3
Atru.chr8.989 Acer truncatum HOM05D003806 ORTHO05D004346 5.7e-125 453.0 624 49.2
Gorai.007G174000 Gossypium raimondii HOM05D003806 ORTHO05D004346 1.1e-123 448.7 620 50.3
Gohir.D11G163300 Gossypium hirsutum HOM05D003806 ORTHO05D004346 1.8e-123 448.0 620 50.2
MBI02_g35832_MAGBIO Magnolia biondii HOM05D003806 ORTHO05D004346 1.8e-123 448.0 685 46.4
Solyc07g043320.3 Solanum lycopersicum HOM05D003806 ORTHO05D004346 9.1e-123 445.7 618 47.7
Gohir.A11G156200 Gossypium hirsutum HOM05D003806 ORTHO05D004346 5.9e-122 443.0 626 49.8
FAN09G2907 Fragaria x ananassa HOM05D003806 ORTHO05D004346 1.7e-121 441.4 625 52.2
FAN05G0560 Fragaria x ananassa HOM05D003806 ORTHO05D004346 8.5e-121 439.1 625 51.8
Sabra16G0020700 Salix brachista HOM05D003806 ORTHO05D004346 2.5e-120 437.6 624 47.4
Sabra16G0025500 Salix brachista HOM05D003806 ORTHO05D004346 2.5e-120 437.6 624 47.4
Nn7g38253 Nelumbo nucifera HOM05D003806 ORTHO05D004346 8.0e-119 432.6 797 40.9
FvH4_6g39571 Fragaria vesca HOM05D003806 ORTHO05D004346 2.6e-117 427.6 628 50.8
Nitab4.5_0000170g0440 Nicotiana tabacum HOM05D003806 ORTHO05D004346 4.4e-117 426.8 942 52.7
Actinidia28585 Actinidia chinensis HOM05D003806 ORTHO05D004346 2.8e-116 424.1 943 53.8
Aqoxy1G01455 Aquilegia oxysepala HOM05D003806 ORTHO05D004346 5.4e-115 419.9 671 44.3
Ca_11242_v3 Cicer arietinum L. HOM05D003806 ORTHO05D004346 2.9e-113 414.1 625 49.8
Psat7g179080 Pisum sativum HOM05D003806 ORTHO05D004346 1.4e-110 405.2 618 47.4
PSO675G3405 Papaver somniferum HOM05D003806 ORTHO05D004346 7.5e-109 399.4 860 36.4
Rhsim12G0014400 Rhododendron simsii HOM05D003806 ORTHO05D004346 9.8e-109 399.1 945 54.3
PSO541G2929 Papaver somniferum HOM05D003806 ORTHO05D004346 4.9e-108 396.7 868 35.6
Peaxi162Scf00393g00413 Petunia axillaris HOM05D003806 ORTHO05D004346 8.3e-108 396.0 619 44.1
vmacro08755 Vaccinium macrocarpon HOM05D003806 ORTHO05D004346 5.4e-107 393.3 946 55.2
THA.LOC104800972 Tarenaya hassleriana HOM05D003806 ORTHO05D004346 7.0e-107 392.9 633 47.6
Potri.006G021200 Populus trichocarpa HOM05D003806 ORTHO05D004346 1.2e-106 392.1 619 45.1
Eucgr.A00904 Eucalyptus grandis HOM05D003806 ORTHO05D004346 2.0e-106 391.3 973 56.6
Lalb_Chr19g0139591 Lupinus albus HOM05D003806 ORTHO05D004346 2.7e-106 391.0 622 43.9
Sopen07g022880 Solanum pennellii HOM05D003806 ORTHO05D004346 1.3e-105 388.7 618 44.2
arahy.Tifrunner.gnm1.ann1.LI5V6E Arachis hypogaea HOM05D003806 ORTHO05D004346 7.3e-104 382.9 944 55.5
FAN02G2860 Fragaria x ananassa HOM05D003806 ORTHO05D004346 9.5e-104 382.5 641 47.7
Sabra06G0014600 Salix brachista HOM05D003806 ORTHO05D004346 6.1e-103 379.8 595 45.5
Potri.016G018700 Populus trichocarpa HOM05D003806 ORTHO05D004346 1.0e-102 379.0 620 44.0
VMungo1127G1373 Vigna mungo HOM05D003806 ORTHO05D004346 3.1e-102 377.5 943 50.2
arahy.Tifrunner.gnm1.ann1.TP1CMR Arachis hypogaea HOM05D003806 ORTHO05D004346 4.0e-102 377.1 944 59.1
Lalb_Chr01g0001171 Lupinus albus HOM05D003806 ORTHO05D004346 4.0e-102 377.1 620 45.5
Medtr4g076030 Medicago truncatula HOM05D003806 ORTHO05D004346 8.9e-102 375.9 623 46.9
Nitab4.5_0002232g0030 Nicotiana tabacum HOM05D003806 ORTHO05D004346 1.2e-101 375.6 941 45.7
Sed0016792 Sechium edule HOM05D003806 ORTHO05D004346 4.4e-101 373.6 1141 42.8
Glyma.12G022500 Glycine max HOM05D003806 ORTHO05D004346 1.7e-100 371.7 624 42.6
Glyma.11G096400 Glycine max HOM05D003806 ORTHO05D004346 3.2e-99 367.5 624 42.5
Phvul.011G024500 Phaseolus vulgaris HOM05D003806 ORTHO05D004346 5.4e-99 366.7 943 57.8
Lj3g0015803 Lotus japonicus HOM05D003806 ORTHO05D004346 1.0e-97 362.5 556 48.6
CSS0042337 Camellia sinensis var. sinensis HOM05D003806 ORTHO05D004346 8.6e-97 359.4 622 47.4
Sabra06G0014700 Salix brachista HOM05D003806 ORTHO05D004346 4.3e-96 357.1 590 44.4
MSTRG.6602 Avicennia marina HOM05D003806 ORTHO05D004346 7.3e-96 356.3 625 41.9
FAN14G1588 Fragaria x ananassa HOM05D003806 ORTHO05D004346 1.2e-95 355.5 641 47.3
FAN14G4911 Fragaria x ananassa HOM05D003806 ORTHO05D004346 1.2e-95 355.5 641 47.3
MSTRG.14879 Avicennia marina HOM05D003806 ORTHO05D004346 2.1e-95 354.8 618 42.2
ClCG07G010910 Citrullus lanatus HOM05D003806 ORTHO05D004346 1.7e-92 345.1 817 36.5
HPP92_009459 Vanilla planifolia HOM05D003806 ORTHO05D004346 2.5e-88 331.3 624 37.0
Migut.M00098 Erythranthe guttata HOM05D003806 ORTHO05D004346 4.3e-88 330.5 624 43.6
Oeu003096.1 Olea europaea HOM05D003806 ORTHO05D004346 3.6e-87 327.4 624 44.1
CsaV3_4G007390 Cucumis sativus L. HOM05D003806 ORTHO05D004346 6.2e-87 326.6 823 33.9
CiPaw.04G076200 Carya illinoinensis HOM05D003806 ORTHO05D004346 1.1e-83 315.8 354 57.1
TPR.G21252 Trifolium pratense HOM05D003806 ORTHO05D004346 6.6e-81 306.6 943 47.3
CANSAT64G1444 Cannabis sativa HOM05D003806 ORTHO05D004346 5.6e-80 303.5 627 40.2
CDE05G0051 Ceratophyllum demersum HOM05D003806 ORTHO05D004346 3.6e-79 300.8 630 36.8
Aqoxy7G02954 Aquilegia oxysepala HOM05D003806 ORTHO05D004346 1.7e-76 292.0 545 39.8
ECA246G1737 Erigeron canadensis HOM05D003806 ORTHO05D004346 5.4e-75 287.0 627 37.8
PGR031G3264 Punica granatum HOM05D003806 ORTHO05D004346 9.3e-75 286.2 636 36.8
Actinidia12514 Actinidia chinensis HOM05D003806 ORTHO05D004346 6.0e-74 283.5 333 54.7
EL10Ac2g03814 Beta vulgaris HOM05D003806 ORTHO05D004346 8.7e-73 279.6 416 47.1
DCAR_009841 Daucus carota HOM05D003806 ORTHO05D004346 1.1e-72 279.3 901 46.7
AT1G05320 Arabidopsis thaliana HOM05D003806 ORTHO05D004346 1.5e-72 278.9 603 37.6
Sed0003037 Sechium edule HOM05D003806 ORTHO05D004346 4.0e-70 270.8 811 31.3
Sabra06G0015000 Salix brachista HOM05D003806 ORTHO05D004346 1.2e-69 269.2 426 43.7
SGA_v2.0_scaffold73G24430 Striga asiatica HOM05D003806 ORTHO05D004346 2.6e-69 268.1 539 41.7
CARHR126030 Cardamine hirsuta HOM05D003806 ORTHO05D004346 3.4e-69 267.7 620 36.5
CDE02G3965 Ceratophyllum demersum HOM05D003806 ORTHO05D004346 1.1e-62 246.1 490 35.9
Aa31LG5G4290 Aethionema arabicum HOM05D003806 ORTHO05D004346 1.4e-62 245.7 621 37.0
TAR624G1065 Trochodendron aralioides HOM05D003806 ORTHO05D004346 5.3e-62 243.8 367 44.7
Carub.0001s0463 Capsella rubella HOM05D003806 ORTHO05D004346 1.5e-61 242.3 612 37.4
BcaC02g11341 Brassica carinata HOM05D003806 ORTHO05D001704 1.3e-60 239.2 580 38.6
SalBow7G1206 Salvia bowleyana HOM05D003806 ORTHO05D004346 2.7e-58 231.5 615 40.3
AUR62009108 Chenopodium quinoa HOM05D003806 ORTHO05D004346 1.9e-56 225.3 417 41.0
C04p17390 Brassica napus HOM05D003806 ORTHO05D004346 8.1e-55 219.9 585 37.8
THA.LOC104816049 Tarenaya hassleriana HOM05D003806 ORTHO05D004346 1.1e-54 219.5 624 36.9
Sp4g14610 Schrenkiella parvula HOM05D003806 ORTHO05D004346 3.4e-53 214.5 480 40.8
Oeu048050.1 Olea europaea HOM05D003806 ORTHO05D004346 3.8e-52 211.1 215 59.5
Lsat_1_v5_gn_3_34740 Lactuca sativa HOM05D003806 ORTHO05D004346 8.4e-52 209.9 573 35.1
AL4G27610 Arabidopsis lyrata HOM05D003806 ORTHO05D004346 2.7e-50 204.9 624 31.6
BolC4t23290H Brassica oleracea HOM05D008171 ORTHO05D006541 2.7e-50 204.9 576 37.2
AL1G15120 Arabidopsis lyrata HOM05D003806 ORTHO05D004346 1.5e-48 199.1 614 37.9
Oeu021135.1 Olea europaea HOM05D003806 ORTHO05D004346 2.5e-48 198.4 229 55.0
BolC5t29142H Brassica oleracea HOM05D003806 ORTHO05D004346 4.0e-46 191.0 609 33.3
DCAR_013337 Daucus carota HOM05D003806 ORTHO05D004346 2.2e-44 185.3 620 31.8
CANSAT64G1938 Cannabis sativa HOM05D003806 ORTHO05D004346 1.8e-41 175.6 245 49.8
MELO3C016203.2 Cucumis melo HOM05D003806 ORTHO05D004346 1.9e-40 172.2 687 27.2
Thhalv10016148m.g Eutrema salsugineum HOM05D003806 ORTHO05D004346 1.9e-40 172.2 493 34.7
AUR62043987 Chenopodium quinoa HOM05D003806 ORTHO05D004346 9.7e-40 169.9 505 35.2
Carub.0004s1356 Capsella rubella HOM05D003806 ORTHO05D004346 1.1e-38 166.4 623 31.8
unitig_8.g4605 Utricularia gibba HOM05D001005 ORTHO05D000836 1.1e-38 166.4 610 28.4
SGA_v2.0_scaffold181G39737 Striga asiatica HOM05D003806 ORTHO05D004346 6.9e-38 163.7 340 40.0
BraA05t20242Z Brassica rapa HOM05D003806 ORTHO05D004346 2.0e-37 162.2 298 47.7
HanXRQChr17g0541141 Helianthus annuus HOM05D003806 ORTHO05D004346 4.5e-37 161.0 621 30.8
ATR0763G047 Amborella trichopoda HOM05D003806 ORTHO05D004346 6.5e-36 157.1 307 40.4
Sp1g04190 Schrenkiella parvula HOM05D003806 ORTHO05D004346 5.5e-35 154.1 626 31.6
A05p13020 Brassica napus HOM05D003806 ORTHO05D004346 1.2e-34 152.9 303 45.5
HanXRQChr06g0171661 Helianthus annuus HOM05D003806 ORTHO05D004346 1.8e-33 149.1 405 33.8
AUR62043599 Chenopodium quinoa HOM05D003806 ORTHO05D004346 2.3e-33 148.7 467 34.0
AT2G32240 Arabidopsis thaliana HOM05D003806 ORTHO05D004346 6.7e-33 147.1 623 29.2
AUR62020563 Chenopodium quinoa HOM05D003806 ORTHO05D004346 1.5e-32 146.0 884 26.2
Sc23g0004300 Simmondsia chinensis HOM05D003806 ORTHO05D004346 3.3e-32 144.8 246 45.5
BcaC01g05916 Brassica carinata HOM05D003806 ORTHO05D004346 1.3e-31 142.9 344 35.5
Actinidia31596 Actinidia chinensis HOM05D003806 ORTHO05D004346 2.8e-31 141.7 153 60.1
C05p03650 Brassica napus HOM05D003806 ORTHO05D004346 3.7e-31 141.4 609 29.7
Hund19432 Selenicereus undatus HOM05D003806 ORTHO05D004346 1.2e-29 136.3 924 24.8
A03p18080 Brassica napus HOM05D003806 ORTHO05D004346 1.0e-28 133.3 344 33.7
AUR62020559 Chenopodium quinoa HOM05D003806 ORTHO05D004346 2.2e-28 132.1 884 25.5
A10p04030 Brassica napus HOM05D003806 ORTHO05D004346 6.5e-28 130.6 546 27.3
Os04g0614650 Oryza sativa ssp. japonica HOM05D003806 ORTHO05D004346 1.4e-27 129.4 390 29.5
C03p21110 Brassica napus HOM05D003806 ORTHO05D004346 2.5e-27 128.6 344 34.6
BolC3t14493H Brassica oleracea HOM05D003806 ORTHO05D004346 2.5e-27 128.6 344 34.6
Actinidia31597 Actinidia chinensis HOM05D003806 ORTHO05D004346 8.8e-25 120.2 158 50.6
Sabra06G0014900 Salix brachista HOM05D003806 ORTHO05D004346 2.0e-24 119.0 120 59.2
Zm00001eb070840 Zea mays HOM05D003806 ORTHO05D004346 4.4e-24 117.9 687 29.7
ATR0763G279 Amborella trichopoda HOM05D003806 ORTHO05D004346 2.0e-21 109.0 345 32.5
Sabra06G0015100 Salix brachista HOM05D003806 ORTHO05D004346 1.7e-20 105.9 90 63.3
CARHR004810 Cardamine hirsuta HOM05D003806 ORTHO05D004346 1.1e-19 103.2 341 37.0
HPP92_027643 Vanilla planifolia HOM05D003806 ORTHO05D004346 2.3e-17 95.5 182 37.4
BraA03t11067Z Brassica rapa HOM05D003806 ORTHO05D004346 3.0e-17 95.1 344 31.7
BraA10t42674Z Brassica rapa HOM05D003806 ORTHO05D004346 3.0e-17 95.1 553 25.5
unitig_85.g27314 Utricularia gibba HOM05D003806 ORTHO05D004346 5.2e-17 94.4 613 26.8
HanXRQChr15g0470351 Helianthus annuus HOM05D003806 ORTHO05D004346 2.6e-16 92.0 149 44.3
MD09G1138300 Malus domestica HOM05D003806 ORTHO05D004346 5.7e-16 90.9 114 48.2
Dinv29619 Davidia involucrata HOM05D003806 ORTHO05D004346 9.7e-16 90.1 51 98.0
Thhalv10006865m.g Eutrema salsugineum HOM05D003806 ORTHO05D004346 4.8e-15 87.8 610 27.5
Actinidia12513 Actinidia chinensis HOM05D003806 ORTHO05D004346 8.2e-15 87.0 59 84.7
C08p51770 Brassica napus HOM05D003806 ORTHO05D004346 5.3e-14 84.3 339 28.6
A09p67490 Brassica napus HOM05D003806 ORTHO05D004346 1.1e-11 76.6 421 28.7
BraA09t42077Z Brassica rapa HOM05D003806 ORTHO05D004346 1.1e-11 76.6 421 29.7
Ah.11g044370 Amaranthus hybridus HOM05D003806 ORTHO05D004346 3.2e-11 75.1 261 28.7
BolC8t52706H Brassica oleracea HOM05D003806 ORTHO05D004346 6.1e-10 70.9 323 27.2
arahy.Tifrunner.gnm1.ann1.7R6RP5 Arachis hypogaea HOM05D003806 ORTHO05D004346 1.4e-09 69.7 111 49.5
Aa31LG1G19290 Aethionema arabicum HOM05D003806 ORTHO05D004346 3.0e-09 68.6 79 51.9
Aa31LG1G19380 Aethionema arabicum HOM05D003806 ORTHO05D004346 3.0e-09 68.6 79 51.9
Cc04_g04110 Coffea canephora HOM05D003806 ORTHO05D004346 7.5e-08 63.9 57 61.4
Nn7g36612 Nelumbo nucifera HOM05D002721 ORTHO05D002919 4.8e-07 61.2 360 23.6
Nn2g14903 Nelumbo nucifera HOM05D002721 ORTHO05D002919 1.4e-06 59.7 360 24.2
SEGI_03911 Sequoiadendron giganteum HOM05D003806 ORTHO05D002919 1.8e-06 59.3 467 24.0
SEGI_00522 Sequoiadendron giganteum HOM05D003806 ORTHO05D004346 9.1e-06 57.0 508 24.8


User provided reference genes

Program Settings