Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv09536 Davidia involucrata HOM05D004087 ORTHO05D004787 3.6e-101 371.7 201 100.0
Actinidia00355 Actinidia chinensis HOM05D004087 ORTHO05D004787 3.2e-70 268.9 202 74.8
Hma1.2p1_0661F.1_g198070 Hydrangea macrophylla HOM05D004087 ORTHO05D004787 3.2e-70 268.9 201 75.1
CSS0031122 Camellia sinensis var. sinensis HOM05D004087 ORTHO05D004787 9.1e-65 250.8 208 71.6
TAR628G1056 Trochodendron aralioides HOM05D000194 ORTHO05D000069 2.2e-58 229.6 200 66.5
GSVIVG01037047001 Vitis vinifera HOM05D004087 ORTHO05D004787 3.8e-55 218.8 206 64.6
Nn5g30675 Nelumbo nucifera HOM05D004087 ORTHO05D004787 2.1e-53 213.0 207 64.7
Prupe.8G150800 Prunus persica HOM05D004087 ORTHO05D004787 1.0e-52 210.7 213 62.4
Cfa004696 Carpinus fangiana HOM05D004087 ORTHO05D004787 4.4e-51 205.3 204 62.7
COL.COLO4_32481 Corchorus olitorius HOM05D004087 ORTHO05D004787 5.8e-51 204.9 158 72.8
Thecc.02G120300 Theobroma cacao HOM05D004087 ORTHO05D004787 2.9e-50 202.6 208 60.6
CANSAT25G1673 Cannabis sativa HOM05D004087 ORTHO05D004787 8.3e-50 201.1 206 60.2
Gorai.005G229700 Gossypium raimondii HOM05D003497 ORTHO05D003964 3.2e-49 199.1 202 60.4
Gohir.D02G203142 Gossypium hirsutum HOM05D003497 ORTHO05D004787 4.1e-49 198.7 202 60.4
FAN24G1045 Fragaria x ananassa HOM05D004087 ORTHO05D004787 1.6e-48 196.8 213 59.2
CiPaw.05G021000 Carya illinoinensis HOM05D004087 ORTHO05D004787 2.0e-48 196.4 205 62.9
ClCG02G007130 Citrullus lanatus HOM05D004087 ORTHO05D004787 2.7e-48 196.1 206 59.7
RcHm_v2.0_Chr6g0248281 Rosa chinensis HOM05D004087 ORTHO05D004787 2.7e-48 196.1 215 60.0
Gohir.A03G180900 Gossypium hirsutum HOM05D003497 ORTHO05D003964 4.6e-48 195.3 202 59.9
FAN27G0771 Fragaria x ananassa HOM05D004087 ORTHO05D004787 7.8e-48 194.5 210 57.6
FvH4_2g03150 Fragaria vesca HOM05D004087 ORTHO05D004787 1.3e-47 193.7 214 58.4
FAN20G2318 Fragaria x ananassa HOM05D004087 ORTHO05D004787 2.3e-47 193.0 211 58.8
Atru.chr5.2274 Acer truncatum HOM05D004087 ORTHO05D004787 3.9e-47 192.2 206 58.7
Duzib132G0587 Durio zibethinus HOM05D004087 ORTHO05D004787 8.6e-47 191.0 201 59.7
FAN15G0324 Fragaria x ananassa HOM05D004087 ORTHO05D004787 1.9e-46 189.9 214 57.5
CsaV3_7G007690 Cucumis sativus L. HOM05D004087 ORTHO05D004787 5.6e-46 188.3 206 59.2
PSO170G3120 Papaver somniferum HOM05D004087 ORTHO05D004787 9.5e-46 187.6 205 54.6
HanXRQChr17g0551501 Helianthus annuus HOM05D004087 ORTHO05D004787 1.2e-45 187.2 204 58.8
PGR042G2373 Punica granatum HOM05D004087 ORTHO05D004787 2.8e-45 186.0 206 54.4
Sed0019763 Sechium edule HOM05D004087 ORTHO05D004787 2.8e-45 186.0 206 56.3
PSO017G3065 Papaver somniferum HOM05D004087 ORTHO05D004787 3.6e-45 185.7 204 51.0
QL11p029242 Quercus lobata HOM05D004087 ORTHO05D004787 1.4e-44 183.7 210 57.1
THA.LOC104807209 Tarenaya hassleriana HOM05D004087 ORTHO05D004787 1.8e-44 183.3 203 52.2
Eucgr.G01187 Eucalyptus grandis HOM05D004087 ORTHO05D004787 2.3e-44 183.0 170 61.2
Potri.001G289600 Populus trichocarpa HOM05D004087 ORTHO05D004787 4.0e-44 182.2 179 60.3
TWI59G0284 Tripterygium wilfordii HOM05D004087 ORTHO05D004787 5.2e-44 181.8 205 55.6
Ciclev10029333m.g Citrus clementina HOM05D004087 ORTHO05D004787 2.0e-43 179.9 202 58.4
Sp7g31520 Schrenkiella parvula HOM05D004087 ORTHO05D004787 2.0e-43 179.9 205 56.1
Solyc01g106810.4 Solanum lycopersicum HOM05D004087 ORTHO05D004787 3.4e-43 179.1 203 55.7
Ah.01g007120 Amaranthus hybridus HOM05D004087 ORTHO05D004787 5.8e-43 178.3 175 62.3
Lsat_1_v5_gn_7_84781 Lactuca sativa HOM05D004087 ORTHO05D004787 9.8e-43 177.6 169 63.9
Manes.10G087100 Manihot esculenta HOM05D004087 ORTHO05D004787 9.8e-43 177.6 145 72.4
ECA236G0105 Erigeron canadensis HOM05D004087 ORTHO05D004787 2.2e-42 176.4 207 55.1
AL7G17680 Arabidopsis lyrata HOM05D004087 ORTHO05D004787 3.7e-42 175.6 211 54.0
AT4G33780 Arabidopsis thaliana HOM05D004087 ORTHO05D004787 6.4e-42 174.9 163 61.3
Carub.0007s0665 Capsella rubella HOM05D004087 ORTHO05D004787 6.4e-42 174.9 209 50.7
Sopen01g049120 Solanum pennellii HOM05D004087 ORTHO05D004787 6.4e-42 174.9 204 55.4
Thhalv10026262m.g Eutrema salsugineum HOM05D004087 ORTHO05D004787 1.1e-41 174.1 206 55.3
CARHR241870 Cardamine hirsuta HOM05D004087 ORTHO05D004787 1.4e-41 173.7 207 55.1
PGSC0003DMG400025835 Solanum tuberosum HOM05D004087 ORTHO05D004787 2.4e-41 172.9 184 59.8
Aa31sc355G20 Aethionema arabicum HOM05D004087 ORTHO05D004787 3.2e-41 172.6 208 54.3
MD05G1106700 Malus domestica HOM05D004087 ORTHO05D004787 3.2e-41 172.6 216 53.7
Sabra16G0181200 Salix brachista HOM05D004087 ORTHO05D004787 4.1e-41 172.2 229 52.0
BcaNung04672 Brassica carinata HOM05D004087 ORTHO05D004787 5.4e-41 171.8 212 51.9
BraA01t00439Z Brassica rapa HOM05D004087 ORTHO05D004787 1.2e-40 170.6 166 60.2
Cc02_g20080 Coffea canephora HOM05D004087 ORTHO05D004787 2.1e-40 169.9 209 55.5
BraA03t15307Z Brassica rapa HOM05D004087 ORTHO05D004787 2.7e-40 169.5 204 55.9
Hund06503 Selenicereus undatus HOM05D004087 ORTHO05D004787 2.7e-40 169.5 178 59.6
Peaxi162Scf00016g03121 Petunia axillaris HOM05D004087 ORTHO05D004787 6.0e-40 168.3 193 54.9
Hund06504 Selenicereus undatus HOM05D004087 ORTHO05D004787 6.0e-40 168.3 178 59.6
C01p04920 Brassica napus HOM05D004087 ORTHO05D004787 7.8e-40 167.9 168 60.7
A03p62320 Brassica napus HOM05D004087 ORTHO05D004787 3.9e-39 165.6 166 61.4
C07p59880 Brassica napus HOM05D004087 ORTHO05D004787 5.1e-39 165.2 210 53.3
BolC7t46432H Brassica oleracea HOM05D004087 ORTHO05D004787 1.1e-38 164.1 171 59.1
Sc05g0005570 Simmondsia chinensis HOM05D004087 ORTHO05D004787 1.5e-38 163.7 150 64.7
Migut.B00471 Erythranthe guttata HOM05D004087 ORTHO05D004787 2.5e-38 162.9 190 54.7
Nitab4.5_0000772g0090 Nicotiana tabacum HOM05D004087 ORTHO05D004787 3.3e-38 162.5 194 54.1
Nitab4.5_0009103g0030 Nicotiana tabacum HOM05D004087 ORTHO05D004787 3.3e-38 162.5 221 52.0
BolC1t00476H Brassica oleracea HOM05D004087 ORTHO05D004787 4.3e-38 162.2 162 61.1
Aqoxy6G02440 Aquilegia oxysepala HOM05D004087 ORTHO05D004787 5.6e-38 161.8 180 52.2
BcaNung02921 Brassica carinata HOM05D004087 ORTHO05D004787 1.2e-37 160.6 153 62.1
BcaNung04326 Brassica carinata HOM05D004087 ORTHO05D004787 4.7e-37 158.7 151 63.6
BcaC09g52189 Brassica carinata HOM05D000477 ORTHO05D000338 2.3e-36 156.4 106 69.8
ATR0739G081 Amborella trichopoda HOM05D004087 ORTHO05D004787 3.1e-36 156.0 166 59.6
Oeu028917.1 Olea europaea HOM05D004087 ORTHO05D004787 8.9e-36 154.5 128 71.1
Phvul.002G050600 Phaseolus vulgaris HOM05D004087 ORTHO05D004787 1.2e-35 154.1 159 56.6
DCAR_021942 Daucus carota HOM05D004087 ORTHO05D004787 1.5e-35 153.7 231 49.8
CDE04G2047 Ceratophyllum demersum HOM05D004087 ORTHO05D004787 2.6e-35 152.9 164 56.7
MBI16_g37623_MAGBIO Magnolia biondii HOM05D004087 ORTHO05D004787 4.4e-35 152.1 165 60.6
Glyma.01G241400 Glycine max HOM05D004087 ORTHO05D004787 7.5e-35 151.4 160 55.0
EL10Ac9g22175 Beta vulgaris HOM05D004087 ORTHO05D004787 9.9e-35 151.0 229 46.3
CDE06G2321 Ceratophyllum demersum HOM05D001904 ORTHO05D001854 1.9e-30 136.7 139 59.7
AUR62027025 Chenopodium quinoa HOM05D003497 ORTHO05D003964 4.7e-29 132.1 99 65.7
MD10G1111500 Malus domestica HOM05D004087 ORTHO05D004787 6.8e-28 128.3 178 54.5
MELO3C018531.2 Cucumis melo HOM05D004087 ORTHO05D004787 1.5e-27 127.1 151 59.6
Zm00001eb009500 Zea mays HOM05D004087 ORTHO05D004787 4.4e-27 125.6 109 55.0
Haze_10292 Corylus avellana HOM05D004087 ORTHO05D004787 7.6e-27 124.8 280 39.6
RhsimUnG0040800 Rhododendron simsii HOM05D004087 ORTHO05D004787 1.4e-25 120.6 219 42.0
SGA_v2.0_scaffold32G12983 Striga asiatica HOM05D004087 ORTHO05D004787 5.4e-25 118.6 94 61.7
Lj5A221T58 Lonicera japonica HOM05D004087 ORTHO05D004787 1.2e-24 117.5 136 64.7
SalBow6G0931 Salvia bowleyana HOM05D004087 ORTHO05D004787 1.3e-23 114.0 74 74.3
BolC2t07908H Brassica oleracea HOM05D004087 ORTHO05D004787 2.3e-23 113.2 73 76.7
BcaC03g14363 Brassica carinata HOM05D004087 ORTHO05D004787 3.9e-23 112.5 74 74.3
Nitab4.5_0000710g0070 Nicotiana tabacum HOM05D004087 ORTHO05D004787 6.6e-23 111.7 177 46.3
Actinidia01168 Actinidia chinensis HOM05D004087 ORTHO05D004787 8.7e-23 111.3 211 38.4
Gohir.A13G047950 Gossypium hirsutum HOM05D004087 ORTHO05D004787 5.6e-22 108.6 134 45.5
vmacro01944 Vaccinium macrocarpon HOM05D004087 ORTHO05D004787 2.1e-21 106.7 74 71.6
CiPaw.06G078300 Carya illinoinensis HOM05D004087 ORTHO05D004787 2.8e-21 106.3 200 39.0
Solyc04g005120.3 Solanum lycopersicum HOM05D004087 ORTHO05D004787 2.8e-21 106.3 112 51.8
Sopen04g001140 Solanum pennellii HOM05D004087 ORTHO05D004787 2.8e-21 106.3 112 51.8
A01p04540 Brassica napus HOM05D004087 ORTHO05D004787 3.6e-21 105.9 116 60.3
VMungo1215G2093 Vigna mungo HOM05D004087 ORTHO05D004787 4.7e-21 105.5 144 45.1
Sabra08G0144800 Salix brachista HOM05D004087 ORTHO05D004787 6.2e-21 105.1 96 54.2
Ciclev10032809m.g Citrus clementina HOM05D004087 ORTHO05D004787 1.1e-20 104.4 111 48.6
Manes.05G094600 Manihot esculenta HOM05D004087 ORTHO05D004787 1.1e-20 104.4 118 50.0
Potri.008G190900 Populus trichocarpa HOM05D004087 ORTHO05D004787 1.4e-20 104.0 96 53.1
Glyma.01G039100 Glycine max HOM05D004087 ORTHO05D004787 1.8e-20 103.6 100 55.0
Eucgr.B02582 Eucalyptus grandis HOM05D004087 ORTHO05D004787 2.4e-20 103.2 191 39.3
CAN.G300.5 Capsicum annuum HOM05D004087 ORTHO05D004787 3.1e-20 102.8 176 38.6
Lj2g0011291 Lotus japonicus HOM05D004087 ORTHO05D004787 3.1e-20 102.8 101 55.4
Phvul.002G079300 Phaseolus vulgaris HOM05D004087 ORTHO05D004787 3.1e-20 102.8 100 55.0
VMungo1215G1106 Vigna mungo HOM05D004087 ORTHO05D004787 3.1e-20 102.8 117 51.3
Cpa.g.sc5.304 Carica papaya HOM05D004087 ORTHO05D004787 5.3e-20 102.1 89 53.9
COL.COLO4_36242 Corchorus olitorius HOM05D004087 ORTHO05D004787 5.3e-20 102.1 100 55.0
Aqoxy3G03190 Aquilegia oxysepala HOM05D004087 ORTHO05D004787 6.9e-20 101.7 182 41.2
Glyma.02G025600 Glycine max HOM05D004087 ORTHO05D004787 1.2e-19 100.9 96 55.2
MBI01_g41231_MAGBIO Magnolia biondii HOM05D004087 ORTHO05D004787 1.2e-19 100.9 112 50.0
Peaxi162Scf00187g00617 Petunia axillaris HOM05D004087 ORTHO05D004787 1.2e-19 100.9 89 57.3
Gohir.D04G136500 Gossypium hirsutum HOM05D004087 ORTHO05D004787 1.5e-19 100.5 107 50.5
Gorai.012G120300 Gossypium raimondii HOM05D004087 ORTHO05D004787 1.5e-19 100.5 107 50.5
C02p17780 Brassica napus HOM05D004087 ORTHO05D004787 2.6e-19 99.8 61 78.7
TPR.G26706 Trifolium pratense HOM05D004087 ORTHO05D004787 5.8e-19 98.6 100 50.0
PGR119G1273 Punica granatum HOM05D004087 ORTHO05D004787 9.9e-19 97.8 100 54.0
Lalb_Chr05g0217411 Lupinus albus HOM05D004087 ORTHO05D004787 1.7e-18 97.1 100 49.0
PSO591G0142 Papaver somniferum HOM05D004087 ORTHO05D004787 2.2e-18 96.7 91 52.7
Atru.chr11.1891 Acer truncatum HOM05D004087 ORTHO05D004787 2.9e-18 96.3 100 48.0
TAR622G0570 Trochodendron aralioides HOM05D004087 ORTHO05D004787 3.8e-18 95.9 112 47.3
GSVIVG01020122001 Vitis vinifera HOM05D004087 ORTHO05D004787 3.8e-18 95.9 151 41.1
THA.LOC104822080 Tarenaya hassleriana HOM05D004087 ORTHO05D004787 6.4e-18 95.1 104 48.1
Haze_12080 Corylus avellana HOM05D004087 ORTHO05D004787 8.4e-18 94.7 130 43.8
Medtr5g037230 Medicago truncatula HOM05D004087 ORTHO05D004787 8.4e-18 94.7 198 34.8
PSO832G0995 Papaver somniferum HOM05D004087 ORTHO05D004787 1.1e-17 94.4 91 51.6
unitig_0.g632 Utricularia gibba HOM05D004087 ORTHO05D004787 1.9e-17 93.6 89 61.8
Psat2g117160 Pisum sativum HOM05D004087 ORTHO05D004787 2.4e-17 93.2 117 46.2
AUR62030868 Chenopodium quinoa HOM05D004087 ORTHO05D004787 3.2e-17 92.8 91 56.0
Rhsim12G0127500 Rhododendron simsii HOM05D004087 ORTHO05D004787 3.2e-17 92.8 166 36.1
arahy.Tifrunner.gnm1.ann1.0DC02M Arachis hypogaea HOM05D004087 ORTHO05D004787 7.1e-17 91.7 88 54.5
arahy.Tifrunner.gnm1.ann1.F53DZL Arachis hypogaea HOM05D004087 ORTHO05D004787 7.1e-17 91.7 88 54.5
Hma1.2p1_0289F.1_g114450 Hydrangea macrophylla HOM05D004087 ORTHO05D004787 7.1e-17 91.7 196 37.2
BcaB03g14773 Brassica carinata HOM05D004087 ORTHO05D004787 1.6e-16 90.5 91 49.5
CARHR063040 Cardamine hirsuta HOM05D004087 ORTHO05D004787 1.6e-16 90.5 91 48.4
BcaC08g46444 Brassica carinata HOM05D004087 ORTHO05D004787 2.7e-16 89.7 91 48.4
C06p43810 Brassica napus HOM05D004087 ORTHO05D004787 2.7e-16 89.7 91 48.4
BolC6t39453H Brassica oleracea HOM05D004087 ORTHO05D004787 2.7e-16 89.7 91 48.4
Sp5g25060 Schrenkiella parvula HOM05D004087 ORTHO05D004787 2.7e-16 89.7 91 48.4
Carub.0002s1665 Capsella rubella HOM05D004087 ORTHO05D004787 4.6e-16 89.0 103 52.4
A07p36390 Brassica napus HOM05D004087 ORTHO05D004787 6.0e-16 88.6 91 48.4
Thhalv10019201m.g Eutrema salsugineum HOM05D004087 ORTHO05D004787 6.0e-16 88.6 91 46.2
AL2G29180 Arabidopsis lyrata HOM05D004087 ORTHO05D004787 1.0e-15 87.8 91 46.2
BraA07t31211Z Brassica rapa HOM05D004087 ORTHO05D004787 1.3e-15 87.4 99 52.5
Dinv24938 Davidia involucrata HOM05D004087 ORTHO05D004787 1.3e-15 87.4 99 49.5
Cfa009049 Carpinus fangiana HOM05D004087 ORTHO05D004787 2.3e-15 86.7 107 44.9
AT1G69935 Arabidopsis thaliana HOM05D004087 ORTHO05D004787 3.0e-15 86.3 91 45.1
Lsat_1_v5_gn_3_112521 Lactuca sativa HOM05D004087 ORTHO05D004787 1.3e-13 80.9 99 59.6
Lsat_1_v5_gn_9_118200 Lactuca sativa HOM05D004087 ORTHO05D004787 3.6e-13 79.3 99 59.6
Cpa.g.sc106.30 Carica papaya HOM05D004087 ORTHO05D004787 8.1e-13 78.2 140 50.0
AagrBONN_evm.TU.Sc2ySwM_344.3821 Anthoceros agrestis HOM05D004087 ORTHO05D004787 3.8e-10 69.3 91 40.7
Mapoly0011s0173 Marchantia polymorpha HOM05D004087 ORTHO05D004787 4.9e-10 68.9 121 31.4
vmacro16306 Vaccinium macrocarpon HOM05D004087 ORTHO05D004787 7.1e-09 65.1 76 50.0
Duzib268G0252 Durio zibethinus HOM05D004087 ORTHO05D004787 1.2e-08 64.3 95 40.0
Nn1g03866 Nelumbo nucifera HOM05D004087 ORTHO05D004787 1.2e-08 64.3 113 38.1
Lsat_1_v5_gn_5_182360 Lactuca sativa HOM05D004087 ORTHO05D004787 2.1e-08 63.5 66 68.2
Ca_28186_v3 Cicer arietinum L. HOM05D004087 ORTHO05D004787 2.7e-08 63.2 65 50.8
Os02g0531900 Oryza sativa ssp. japonica HOM05D004087 ORTHO05D004787 6.0e-08 62.0 66 56.1
QL03p066700 Quercus lobata HOM05D004087 ORTHO05D004787 1.3e-07 60.8 54 59.3
PGSC0003DMG400001914 Solanum tuberosum HOM05D000067 ORTHO05D000097 3.9e-07 59.3 65 50.8


User provided reference genes

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