Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv09378 Davidia involucrata HOM05D004785 ORTHO05D005704 1.0e-274 949.5 495 100.0
Dinv43463 Davidia involucrata HOM05D004785 ORTHO05D005704 3.9e-202 708.4 495 77.4
Hma1.2p1_0845F.1_g227490 Hydrangea macrophylla HOM05D004785 ORTHO05D005704 7.3e-172 607.8 495 68.7
CSS0016942 Camellia sinensis var. sinensis HOM05D004785 ORTHO05D005704 4.0e-170 602.1 495 69.1
CSS0030425 Camellia sinensis var. sinensis HOM05D004785 ORTHO05D005704 4.0e-170 602.1 495 69.1
CiPaw.13G002800 Carya illinoinensis HOM05D004785 ORTHO05D005704 7.0e-167 591.3 492 68.5
Cc02_g27530 Coffea canephora HOM05D004785 ORTHO05D005704 4.6e-166 588.6 501 66.9
TAR636G1066 Trochodendron aralioides HOM05D004785 ORTHO05D005704 1.0e-165 587.4 486 67.7
GSVIVG01032056001 Vitis vinifera HOM05D004785 ORTHO05D005704 1.9e-164 583.2 500 66.6
RcHm_v2.0_Chr1g0314901 Rosa chinensis HOM05D004785 ORTHO05D005704 3.3e-164 582.4 490 67.8
Nn7g36099 Nelumbo nucifera HOM05D004785 ORTHO05D005704 6.2e-163 578.2 490 65.9
Cpa.g.sc234.14 Carica papaya HOM05D004785 ORTHO05D005704 4.0e-162 575.5 519 63.2
FAN10G3515 Fragaria x ananassa HOM05D004785 ORTHO05D005704 4.0e-162 575.5 490 67.6
FvH4_7g00680 Fragaria vesca HOM05D004785 ORTHO05D005704 6.8e-162 574.7 490 67.6
FAN06G5068 Fragaria x ananassa HOM05D004785 ORTHO05D005704 6.8e-162 574.7 490 67.6
Potri.001G269900 Populus trichocarpa HOM05D004785 ORTHO05D005704 6.8e-162 574.7 502 65.1
Rhsim01G0130900 Rhododendron simsii HOM05D004785 ORTHO05D005704 6.8e-162 574.7 495 65.5
FAN01G2822 Fragaria x ananassa HOM05D004785 ORTHO05D005704 2.2e-160 569.7 490 67.1
FAN03G2451 Fragaria x ananassa HOM05D004785 ORTHO05D005704 2.2e-160 569.7 490 67.3
Prupe.2G009600 Prunus persica HOM05D004785 ORTHO05D005704 2.9e-160 569.3 490 65.3
FAN01G2446 Fragaria x ananassa HOM05D004785 ORTHO05D005704 1.4e-159 567.0 490 66.7
Thecc.01G414000 Theobroma cacao HOM05D004785 ORTHO05D005704 5.4e-159 565.1 495 65.5
MD07G1006500 Malus domestica HOM05D004785 ORTHO05D005704 9.2e-159 564.3 493 66.5
QL04p005208 Quercus lobata HOM05D004785 ORTHO05D005704 2.7e-158 562.8 489 66.7
TAR633G2005 Trochodendron aralioides HOM05D004785 ORTHO05D005704 8.6e-157 557.8 497 64.0
Phvul.005G036800 Phaseolus vulgaris HOM05D004785 ORTHO05D005704 1.9e-156 556.6 490 63.3
Duzib138G0206 Durio zibethinus HOM05D004785 ORTHO05D005704 7.3e-156 554.7 494 64.6
Potri.009G064600 Populus trichocarpa HOM05D004785 ORTHO05D005704 1.2e-155 553.9 496 63.9
VMungo1080G1418 Vigna mungo HOM05D004785 ORTHO05D005704 2.1e-155 553.1 490 63.1
Actinidia20681 Actinidia chinensis HOM05D004785 ORTHO05D005704 8.1e-155 551.2 500 64.0
MSTRG.20603 Avicennia marina HOM05D004785 ORTHO05D005704 8.1e-155 551.2 490 64.7
SalBow4G2313 Salvia bowleyana HOM05D004785 ORTHO05D005704 5.2e-154 548.5 487 63.9
arahy.Tifrunner.gnm1.ann1.59DMFX Arachis hypogaea HOM05D004785 ORTHO05D005704 6.8e-154 548.1 492 64.2
CAN.G170.130 Capsicum annuum HOM05D004785 ORTHO05D005704 1.2e-153 547.4 492 63.4
Gorai.004G035900 Gossypium raimondii HOM05D004785 ORTHO05D005704 1.5e-153 547.0 492 64.2
Psat4g149360 Pisum sativum HOM05D004785 ORTHO05D005704 3.4e-153 545.8 490 64.5
PGSC0003DMG400025264 Solanum tuberosum HOM05D004785 ORTHO05D005704 5.8e-153 545.0 494 63.0
Gohir.D08G037900 Gossypium hirsutum HOM05D004785 ORTHO05D005704 3.7e-152 542.3 492 64.0
arahy.Tifrunner.gnm1.ann1.M8XEBR Arachis hypogaea HOM05D004785 ORTHO05D005704 8.3e-152 541.2 492 63.8
TPR.G21739 Trifolium pratense HOM05D004785 ORTHO05D005704 1.4e-151 540.4 490 64.3
MBI04_g14260_MAGBIO Magnolia biondii HOM05D004785 ORTHO05D005704 1.9e-151 540.0 490 63.5
Lalb_Chr01g0008111 Lupinus albus HOM05D004785 ORTHO05D005704 2.4e-151 539.7 494 63.2
vmacro21177 Vaccinium macrocarpon HOM05D004785 ORTHO05D005704 2.4e-151 539.7 495 63.0
Nn2g15504 Nelumbo nucifera HOM05D004785 ORTHO05D005704 3.2e-151 539.3 497 64.2
Sopen01g033900 Solanum pennellii HOM05D004785 ORTHO05D005704 3.2e-151 539.3 494 62.6
ECA246G0971 Erigeron canadensis HOM05D004785 ORTHO05D005704 5.4e-151 538.5 495 62.6
Glyma.08G152600 Glycine max HOM05D004785 ORTHO05D005704 5.4e-151 538.5 494 63.2
Solyc01g086890.3 Solanum lycopersicum HOM05D004785 ORTHO05D005704 7.1e-151 538.1 494 61.7
Lj3g0000927 Lotus japonicus HOM05D004785 ORTHO05D005704 1.6e-150 537.0 490 61.4
Medtr8g036890 Medicago truncatula HOM05D004785 ORTHO05D005704 1.0e-149 534.3 490 63.3
SalBow5G0866 Salvia bowleyana HOM05D004785 ORTHO05D005704 3.9e-149 532.3 489 62.4
SalBow5G5194 Salvia bowleyana HOM05D004785 ORTHO05D005704 3.9e-149 532.3 489 62.4
Migut.N01482 Erythranthe guttata HOM05D004785 ORTHO05D005704 5.1e-149 531.9 496 61.3
Thhalv10010376m.g Eutrema salsugineum HOM05D004785 ORTHO05D005704 8.6e-149 531.2 492 60.4
THA.LOC104801982 Tarenaya hassleriana HOM05D004785 ORTHO05D005704 1.1e-148 530.8 496 61.9
Lalb_Chr19g0132061 Lupinus albus HOM05D004785 ORTHO05D005704 1.5e-148 530.4 490 62.4
Manes.10G146300 Manihot esculenta HOM05D004785 ORTHO05D005704 9.5e-148 527.7 501 61.1
Manes.07G003900 Manihot esculenta HOM05D004785 ORTHO05D005704 1.2e-147 527.3 502 59.8
Sabra09G0047800 Salix brachista HOM05D004785 ORTHO05D005704 3.6e-147 525.8 496 61.3
Sp5g10160 Schrenkiella parvula HOM05D004785 ORTHO05D005704 8.1e-147 524.6 497 60.8
Carub.0005s1846 Capsella rubella HOM05D004785 ORTHO05D005704 1.1e-146 524.2 492 60.0
Glyma.15G272000 Glycine max HOM05D004785 ORTHO05D005704 1.4e-146 523.9 488 61.9
Sed0027076 Sechium edule HOM05D004785 ORTHO05D005704 3.1e-146 522.7 496 61.1
Aa31LG10G7210 Aethionema arabicum HOM05D004785 ORTHO05D005704 4.0e-146 522.3 513 60.0
Duzib268G1355 Durio zibethinus HOM05D004785 ORTHO05D005704 1.5e-145 520.4 494 60.5
Gohir.A08G027150 Gossypium hirsutum HOM05D004785 ORTHO05D005704 2.0e-145 520.0 493 62.7
Lj3g0006296 Lotus japonicus HOM05D004785 ORTHO05D005704 4.4e-145 518.8 493 61.9
Aqoxy1G00294 Aquilegia oxysepala HOM05D004785 ORTHO05D005704 5.8e-145 518.5 496 61.3
HanXRQChr15g0479141 Helianthus annuus HOM05D004785 ORTHO05D005704 5.8e-145 518.5 495 61.2
Nitab4.5_0006850g0010 Nicotiana tabacum HOM05D004785 ORTHO05D005704 5.8e-145 518.5 489 61.3
Sabra16G0165300 Salix brachista HOM05D004785 ORTHO05D005704 7.6e-145 518.1 511 60.1
TWI09G1360 Tripterygium wilfordii HOM05D004785 ORTHO05D005704 9.9e-145 517.7 501 60.7
CsaV3_7G031250 Cucumis sativus L. HOM05D004785 ORTHO05D005704 1.7e-144 516.9 498 61.0
AT3G52120 Arabidopsis thaliana HOM05D004785 ORTHO05D005704 1.9e-143 513.5 492 58.7
MELO3C023531.2 Cucumis melo HOM05D004785 ORTHO05D005704 2.7e-142 509.6 497 61.6
AL5G32690 Arabidopsis lyrata HOM05D004785 ORTHO05D005704 1.1e-140 504.2 514 56.8
TWI73G0859 Tripterygium wilfordii HOM05D004785 ORTHO05D005704 9.6e-140 501.1 499 59.5
Hund03669 Selenicereus undatus HOM05D004785 ORTHO05D005704 1.6e-139 500.4 490 59.2
Atru.chr11.2638 Acer truncatum HOM05D004785 ORTHO05D005704 2.8e-139 499.6 502 59.6
Ciclev10031609m.g Citrus clementina HOM05D004785 ORTHO05D005704 2.8e-139 499.6 507 59.6
CANSAT11G0943 Cannabis sativa HOM05D004785 ORTHO05D005704 6.2e-139 498.4 489 60.9
BolC8t50356H Brassica oleracea HOM05D004785 ORTHO05D005704 1.8e-138 496.9 496 58.3
C08p27390 Brassica napus HOM05D004785 ORTHO05D005704 9.0e-138 494.6 496 58.1
BraA09t39981Z Brassica rapa HOM05D004785 ORTHO05D005704 2.6e-137 493.0 495 58.4
A09p45180 Brassica napus HOM05D004785 ORTHO05D005704 5.8e-137 491.9 496 58.5
Eucgr.G03395 Eucalyptus grandis HOM05D004785 ORTHO05D005704 3.8e-136 489.2 494 57.9
Lsat_1_v5_gn_4_68280 Lactuca sativa HOM05D004785 ORTHO05D005704 6.4e-136 488.4 488 60.7
COL.COLO4_23900 Corchorus olitorius HOM05D004785 ORTHO05D005704 5.4e-135 485.3 490 60.4
BcaNung06094 Brassica carinata HOM05D004785 ORTHO05D005704 7.8e-134 481.5 494 56.9
MBI01_g36433_MAGBIO Magnolia biondii HOM05D004785 ORTHO05D005704 1.0e-133 481.1 498 57.8
Sc15g0001680 Simmondsia chinensis HOM05D004785 ORTHO05D005704 6.6e-133 478.4 490 57.6
Ca_23868_v3 Cicer arietinum L. HOM05D004785 ORTHO05D005704 1.3e-131 474.2 497 57.7
Actinidia21563 Actinidia chinensis HOM05D004785 ORTHO05D005704 2.4e-130 469.9 495 58.2
PSO384G1867 Papaver somniferum HOM05D004785 ORTHO05D005704 3.1e-130 469.5 498 57.0
PSO339G6673 Papaver somniferum HOM05D004785 ORTHO05D005704 1.5e-129 467.2 498 56.6
CDE10G0170 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 1.7e-128 463.8 490 55.7
Peaxi162Scf00428g00096 Petunia axillaris HOM05D004785 ORTHO05D005704 6.4e-128 461.8 500 56.2
AUR62022266 Chenopodium quinoa HOM05D004785 ORTHO05D005704 9.3e-127 458.0 488 56.4
SGA_v2.0_scaffold95G28788 Striga asiatica HOM05D004785 ORTHO05D005704 1.6e-126 457.2 510 54.5
PGR044G1403 Punica granatum HOM05D004785 ORTHO05D005704 6.0e-126 455.3 498 56.2
Lj7C568G16 Lonicera japonica HOM05D004785 ORTHO05D005704 5.6e-124 448.7 496 57.3
Hund07648 Selenicereus undatus HOM05D004785 ORTHO05D005704 1.6e-123 447.2 489 55.0
unitig_61.g26449 Utricularia gibba HOM05D004785 ORTHO05D005704 2.0e-121 440.3 488 54.1
CDE10G1291 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 4.6e-118 429.1 498 51.2
EL10Ac9g21166 Beta vulgaris HOM05D004785 ORTHO05D005704 2.6e-113 413.3 479 53.2
HPP92_022791 Vanilla planifolia HOM05D004785 ORTHO05D005704 7.1e-111 405.2 494 51.0
Sed0007108 Sechium edule HOM05D004785 ORTHO05D005704 2.1e-110 403.7 436 56.7
Nitab4.5_0001542g0040 Nicotiana tabacum HOM05D004785 ORTHO05D005704 7.9e-110 401.7 375 61.1
CDE04G1996 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 3.0e-109 399.8 426 55.2
Oeu014580.2 Olea europaea HOM05D004785 ORTHO05D005704 1.1e-108 397.9 433 56.6
Mapoly0063s0041 Marchantia polymorpha HOM05D004785 ORTHO05D005704 2.2e-107 393.7 498 50.2
ATR0733G146 Amborella trichopoda HOM05D004785 ORTHO05D005704 1.1e-106 391.3 496 52.2
AUR62031974 Chenopodium quinoa HOM05D004785 ORTHO05D005704 1.8e-106 390.6 488 51.4
DCAR_029653 Daucus carota HOM05D004785 ORTHO05D005704 4.3e-100 369.4 486 49.6
SEGI_00751 Sequoiadendron giganteum HOM05D004785 ORTHO05D005704 4.5e-97 359.4 505 47.5
MD02G1315400 Malus domestica HOM05D004785 ORTHO05D005704 7.7e-97 358.6 309 67.3
Zm00001eb325220 Zea mays HOM05D004785 ORTHO05D005704 7.2e-95 352.1 490 47.8
unitig_0.g1380 Utricularia gibba HOM05D004785 ORTHO05D005704 6.3e-91 339.0 364 54.7
Pp3c7_22470 Physcomitrium patens HOM05D004785 ORTHO05D005704 8.2e-91 338.6 492 48.0
Eucgr.J01259 Eucalyptus grandis HOM05D004785 ORTHO05D005704 1.4e-90 337.8 432 50.7
SMO358G0717 Selaginella moellendorffii HOM05D004785 ORTHO05D005704 2.2e-88 330.5 499 45.3
Medtr8g036260 Medicago truncatula HOM05D004785 ORTHO05D005704 4.2e-87 326.2 308 63.0
CBR_g19876 Chara braunii HOM05D004785 ORTHO05D005704 2.4e-82 310.5 562 40.4
Haze_03237 Corylus avellana HOM05D004785 ORTHO05D005704 3.2e-71 273.5 207 73.9
CARHR161860 Cardamine hirsuta HOM05D004785 ORTHO05D005704 4.1e-66 256.5 216 63.9
Gohir.D08G166700 Gossypium hirsutum HOM05D004785 ORTHO05D005704 5.4e-66 256.1 494 41.5
Gorai.004G174100 Gossypium raimondii HOM05D004785 ORTHO05D005704 5.9e-65 252.7 494 41.5
SHI47607 Sapria himalayana HOM05D004785 ORTHO05D005704 1.8e-61 241.1 296 50.7
SHI47732 Sapria himalayana HOM05D004785 ORTHO05D005704 1.8e-61 241.1 296 50.7
Gohir.A08G145800 Gossypium hirsutum HOM05D004785 ORTHO05D005704 1.6e-54 218.0 407 43.2
AagrBONN_evm.TU.Sc2ySwM_228.206 Anthoceros agrestis HOM05D004785 ORTHO05D005704 6.8e-53 212.6 320 45.6
Eucgr.B02099 Eucalyptus grandis HOM05D004785 ORTHO05D005704 5.8e-52 209.5 132 78.0
Pp3c11_4770 Physcomitrium patens HOM05D004785 ORTHO05D005704 1.6e-41 174.9 312 44.2
TAR623G0847 Trochodendron aralioides HOM05D004785 ORTHO05D005704 3.1e-37 160.6 251 42.6
Oeu006578.1 Olea europaea HOM05D004785 ORTHO05D005704 3.2e-34 150.6 178 53.4
BcaC02g09278 Brassica carinata HOM05D004785 ORTHO05D005704 4.1e-34 150.2 167 52.1
C04p40800 Brassica napus HOM05D004785 ORTHO05D005704 4.1e-34 150.2 167 52.1
Medtr8g036255 Medicago truncatula HOM05D004785 ORTHO05D005704 7.8e-33 146.0 74 91.9
Cre16.g686000 Chlamydomonas reinhardtii HOM05D004785 ORTHO05D005704 1.7e-32 144.8 128 56.2
BolC4t25664H Brassica oleracea HOM05D004785 ORTHO05D005704 1.5e-31 141.7 164 49.4
Pp3c11_4670 Physcomitrium patens HOM05D004785 ORTHO05D005704 4.7e-30 136.7 238 43.7
ClCG09G004330 Citrullus lanatus HOM05D004785 ORTHO05D005704 1.2e-28 132.1 69 91.3
Eucgr.A02263 Eucalyptus grandis HOM05D004785 ORTHO05D005704 1.2e-28 132.1 78 80.8
A04p07240 Brassica napus HOM05D004785 ORTHO05D005704 2.2e-27 127.9 147 52.4
TAR623G0421 Trochodendron aralioides HOM05D004785 ORTHO05D005704 1.4e-26 125.2 146 50.7
DCAR_029646 Daucus carota HOM05D004785 ORTHO05D005704 7.1e-26 122.9 68 83.8
CARHR161850 Cardamine hirsuta HOM05D004785 ORTHO05D005704 1.1e-23 115.5 130 55.4
BraA04t16419Z Brassica rapa HOM05D004785 ORTHO05D005704 1.4e-21 108.6 142 46.5
MCO15G372 Micromonas commoda HOM05D004785 ORTHO05D005704 1.3e-16 92.0 547 23.9
AagrBONN_evm.TU.Sc2ySwM_228.74 Anthoceros agrestis HOM05D004785 ORTHO05D005704 5.3e-13 80.1 62 67.7
unitig_0.g1381 Utricularia gibba HOM05D004785 ORTHO05D005704 4.9e-11 73.6 83 55.4
VMungo0720G2622 Vigna mungo HOM05D008589 ORTHO05D010715 3.5e-09 67.4 61 63.9
Os09g0281600 Oryza sativa ssp. japonica HOM05D004785 ORTHO05D005704 1.5e-07 62.0 123 39.8


User provided reference genes

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