Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv08781 Davidia involucrata HOM05D004162 ORTHO05D004543 3.8e-251 870.9 414 100.0
Hma1.2p1_3150F.1_g333200 Hydrangea macrophylla HOM05D004162 ORTHO05D004543 1.6e-193 679.5 405 78.3
Lj5C158G4 Lonicera japonica HOM05D004162 ORTHO05D004543 8.4e-190 667.2 408 75.5
CSS0046385 Camellia sinensis var. sinensis HOM05D004162 ORTHO05D004543 1.1e-186 656.8 410 75.1
GSVIVG01008445001 Vitis vinifera HOM05D004162 ORTHO05D004543 3.4e-183 645.2 408 72.8
Cc04_g06230 Coffea canephora HOM05D004162 ORTHO05D004543 2.5e-173 612.5 408 68.6
TAR371G1103 Trochodendron aralioides HOM05D004162 ORTHO05D004543 2.5e-170 602.4 409 68.5
Manes.06G005900 Manihot esculenta HOM05D004162 ORTHO05D004543 1.6e-164 583.2 408 64.5
Cfa019653 Carpinus fangiana HOM05D004162 ORTHO05D004543 1.4e-163 580.1 405 66.7
MSTRG.9305 Avicennia marina HOM05D004162 ORTHO05D004543 4.1e-160 568.5 407 65.1
Migut.D01539 Erythranthe guttata HOM05D004162 ORTHO05D004543 2.0e-159 566.2 407 63.9
PGSC0003DMG400021171 Solanum tuberosum HOM05D004162 ORTHO05D004543 2.6e-159 565.8 406 63.3
QL10p029785 Quercus lobata HOM05D004162 ORTHO05D004543 3.5e-159 565.5 491 55.8
Ciclev10008209m.g Citrus clementina HOM05D004162 ORTHO05D004543 5.9e-159 564.7 405 64.9
Nn4g24245 Nelumbo nucifera HOM05D004162 ORTHO05D004543 7.7e-159 564.3 409 65.0
CAN.G660.38 Capsicum annuum HOM05D004162 ORTHO05D004543 1.7e-158 563.1 406 63.1
Haze_18859 Corylus avellana HOM05D004162 ORTHO05D004543 1.7e-158 563.1 405 64.9
Atru.chr9.1725 Acer truncatum HOM05D004162 ORTHO05D004543 2.9e-158 562.4 409 64.8
Sopen02g019390 Solanum pennellii HOM05D004162 ORTHO05D004543 9.4e-157 557.4 406 63.1
Atru.chr9.1709 Acer truncatum HOM05D004162 ORTHO05D004543 2.1e-156 556.2 409 64.3
SGA_v2.0_scaffold172G39016 Striga asiatica HOM05D004162 ORTHO05D004543 2.7e-156 555.8 420 61.4
CiPaw.15G143600 Carya illinoinensis HOM05D004162 ORTHO05D004543 6.1e-156 554.7 404 64.4
Solyc02g070300.4 Solanum lycopersicum HOM05D004162 ORTHO05D004543 1.4e-155 553.5 406 62.6
Peaxi162Scf00050g02313 Petunia axillaris HOM05D004162 ORTHO05D004543 9.7e-154 547.4 406 60.1
Oeu046631.1 Olea europaea HOM05D004162 ORTHO05D004543 7.7e-151 537.7 407 63.4
Ah.04g164220 Amaranthus hybridus HOM05D004162 ORTHO05D004543 2.9e-150 535.8 406 60.6
HanXRQChr14g0447361 Helianthus annuus HOM05D004162 ORTHO05D004543 2.9e-150 535.8 407 61.2
ECA238G4801 Erigeron canadensis HOM05D004162 ORTHO05D004543 5.0e-150 535.0 409 60.6
TWI81G0681 Tripterygium wilfordii HOM05D004162 ORTHO05D004543 5.0e-150 535.0 405 60.5
SalBow3G1953 Salvia bowleyana HOM05D004162 ORTHO05D004543 8.0e-148 527.7 407 60.7
Eucgr.B00998 Eucalyptus grandis HOM05D004162 ORTHO05D004543 1.8e-147 526.6 406 60.6
SalBow3G1690 Salvia bowleyana HOM05D004162 ORTHO05D004543 2.3e-147 526.2 407 60.4
EL10Ac4g08358 Beta vulgaris HOM05D004162 ORTHO05D004543 4.1e-144 515.4 455 53.4
Lsat_1_v5_gn_2_63961 Lactuca sativa HOM05D004162 ORTHO05D004543 5.5e-141 505.0 407 58.5
DCAR_003065 Daucus carota HOM05D004162 ORTHO05D004543 7.2e-141 504.6 375 62.9
CANSAT80G1525 Cannabis sativa HOM05D004162 ORTHO05D004543 6.1e-140 501.5 407 59.0
CANSAT54G2092 Cannabis sativa HOM05D004162 ORTHO05D004543 6.8e-139 498.0 409 58.4
Thecc.03G055600 Theobroma cacao HOM05D004162 ORTHO05D004543 5.7e-138 495.0 386 60.4
Lalb_Chr05g0221631 Lupinus albus HOM05D004162 ORTHO05D004543 8.3e-137 491.1 406 57.1
ClCG04G010610 Citrullus lanatus HOM05D004162 ORTHO05D004543 2.4e-136 489.6 408 55.6
Nitab4.5_0000869g0150 Nicotiana tabacum HOM05D004162 ORTHO05D004543 3.8e-134 482.3 428 54.9
Duzib205G1017 Durio zibethinus HOM05D004162 ORTHO05D004543 4.3e-133 478.8 405 57.8
Sed0019203 Sechium edule HOM05D004162 ORTHO05D004543 4.3e-133 478.8 407 54.5
MBI08_g04930_MAGBIO Magnolia biondii HOM05D004162 ORTHO05D004543 1.8e-131 473.4 398 56.0
CsaV3_1G007180 Cucumis sativus L. HOM05D004162 ORTHO05D004543 8.9e-131 471.1 406 53.9
TAR636G2328 Trochodendron aralioides HOM05D004162 ORTHO05D004543 1.2e-130 470.7 378 60.3
PGR083G0911 Punica granatum HOM05D004162 ORTHO05D004543 1.7e-129 466.8 405 56.0
Aqoxy6G00116 Aquilegia oxysepala HOM05D004162 ORTHO05D004543 3.5e-127 459.1 408 54.7
COL.COLO4_05717 Corchorus olitorius HOM05D004162 ORTHO05D004543 2.3e-126 456.4 375 57.6
Nitab4.5_0005963g0070 Nicotiana tabacum HOM05D004162 ORTHO05D004543 1.2e-124 450.7 410 54.6
MELO3C002134.2 Cucumis melo HOM05D004162 ORTHO05D004543 4.0e-123 445.7 405 53.6
Rhsim08G0126500 Rhododendron simsii HOM05D004162 ORTHO05D004543 3.4e-122 442.6 268 75.4
Nn3g21925 Nelumbo nucifera HOM05D004162 ORTHO05D004543 4.4e-122 442.2 415 54.0
MBI07_g11051_MAGBIO Magnolia biondii HOM05D004162 ORTHO05D004543 1.6e-119 433.7 407 52.3
Psat4g000200 Pisum sativum HOM05D004162 ORTHO05D004543 2.3e-118 429.9 415 51.6
Prupe.5G233900 Prunus persica HOM05D004162 ORTHO05D004543 5.0e-118 428.7 382 56.0
unitig_22.g6151 Utricularia gibba HOM05D004162 ORTHO05D004543 5.6e-117 425.2 409 51.1
Gohir.D12G193100 Gossypium hirsutum HOM05D004162 ORTHO05D004543 3.6e-116 422.5 404 52.2
Gorai.008G207900 Gossypium raimondii HOM05D004162 ORTHO05D004543 3.6e-116 422.5 404 52.2
Gohir.A12G191000 Gossypium hirsutum HOM05D004162 ORTHO05D004543 1.8e-115 420.2 404 52.0
MD06G1227400 Malus domestica HOM05D004162 ORTHO05D004543 6.8e-115 418.3 415 51.6
RcHm_v2.0_Chr7g0178331 Rosa chinensis HOM05D004162 ORTHO05D004543 7.1e-112 408.3 408 49.5
MD13G1006200 Malus domestica HOM05D004162 ORTHO05D004543 2.1e-111 406.8 423 51.3
Glyma.08G054800 Glycine max HOM05D004162 ORTHO05D004543 4.6e-111 405.6 406 51.0
Gohir.D07G078300 Gossypium hirsutum HOM05D004162 ORTHO05D004543 4.6e-111 405.6 408 51.5
Glyma.05G246600 Glycine max HOM05D004162 ORTHO05D004543 6.0e-111 405.2 405 49.1
Gorai.001G082700 Gossypium raimondii HOM05D004162 ORTHO05D004543 6.0e-111 405.2 408 51.5
Peaxi162Scf00420g00077 Petunia axillaris HOM05D004162 ORTHO05D004543 2.1e-108 396.7 430 46.3
PSO210G3845 Papaver somniferum HOM05D004162 ORTHO05D004543 2.8e-108 396.4 466 46.4
Nitab4.5_0001756g0030 Nicotiana tabacum HOM05D004162 ORTHO05D004543 3.1e-107 392.9 365 52.1
FAN14G2905 Fragaria x ananassa HOM05D004162 ORTHO05D004543 6.8e-107 391.7 409 48.7
FvH4_6g53500 Fragaria vesca HOM05D004162 ORTHO05D004543 1.2e-106 391.0 409 48.4
FAN09G1804 Fragaria x ananassa HOM05D004162 ORTHO05D004543 3.4e-106 389.4 409 47.9
Medtr8g107380 Medicago truncatula HOM05D004162 ORTHO05D004543 3.4e-106 389.4 409 49.6
Ca_17185_v3 Cicer arietinum L. HOM05D004162 ORTHO05D004543 1.3e-105 387.5 419 48.7
FAN05G0184 Fragaria x ananassa HOM05D004162 ORTHO05D004543 2.2e-105 386.7 409 48.4
VMungo0251G2472 Vigna mungo HOM05D004162 ORTHO05D004543 3.8e-105 386.0 408 48.3
FAN02G1371 Fragaria x ananassa HOM05D004162 ORTHO05D004543 2.4e-104 383.3 410 47.8
FAN02G2531 Fragaria x ananassa HOM05D004162 ORTHO05D004543 4.3e-101 372.5 410 46.6
Aqoxy7G03636 Aquilegia oxysepala HOM05D000527 ORTHO05D004543 1.2e-100 370.9 374 50.3
arahy.Tifrunner.gnm1.ann1.B7AHJA Arachis hypogaea HOM05D004162 ORTHO05D004543 1.6e-100 370.5 408 46.1
ATR0594G087 Amborella trichopoda HOM05D004162 ORTHO05D004543 2.8e-100 369.8 423 44.9
arahy.Tifrunner.gnm1.ann1.681ID1 Arachis hypogaea HOM05D004162 ORTHO05D004543 2.8e-100 369.8 408 46.1
arahy.Tifrunner.gnm1.ann1.7MCX13 Arachis hypogaea HOM05D004162 ORTHO05D004543 8.9e-99 364.8 408 45.8
Actinidia07535 Actinidia chinensis HOM05D004162 ORTHO05D004543 1.5e-98 364.0 409 45.5
BolC9t59794H Brassica oleracea HOM05D004162 ORTHO05D004543 1.4e-96 357.5 405 45.2
AL6G16350 Arabidopsis lyrata HOM05D004162 ORTHO05D004543 5.4e-96 355.5 405 45.4
AUR62037555 Chenopodium quinoa HOM05D004162 ORTHO05D004543 1.6e-95 354.0 335 51.0
HPP92_005364 Vanilla planifolia HOM05D004162 ORTHO05D004543 3.5e-95 352.8 414 44.2
C09p70490 Brassica napus HOM05D004162 ORTHO05D004543 4.6e-95 352.4 404 45.5
Carub.0006s0520 Capsella rubella HOM05D004162 ORTHO05D004543 3.9e-94 349.4 405 44.7
Phvul.002G330500 Phaseolus vulgaris HOM05D004162 ORTHO05D004543 6.6e-94 348.6 305 54.1
Sp6g36540 Schrenkiella parvula HOM05D004162 ORTHO05D004543 1.1e-93 347.8 404 45.0
A10p30070 Brassica napus HOM05D004162 ORTHO05D004543 3.3e-93 346.3 404 44.8
BraA10t45047Z Brassica rapa HOM05D004162 ORTHO05D004543 3.3e-93 346.3 406 44.6
Thhalv10013532m.g Eutrema salsugineum HOM05D004162 ORTHO05D004543 7.3e-93 345.1 403 44.2
Oeu011444.1 Olea europaea HOM05D004162 ORTHO05D004543 1.3e-92 344.4 405 43.7
THA.LOC104810218 Tarenaya hassleriana HOM05D004162 ORTHO05D004543 1.6e-92 344.0 418 43.5
THA.LOC104826807 Tarenaya hassleriana HOM05D004162 ORTHO05D004543 1.6e-92 344.0 418 43.5
Sc04g0004810 Simmondsia chinensis HOM05D004162 ORTHO05D004543 2.4e-91 340.1 311 53.1
AT5G06310 Arabidopsis thaliana HOM05D004162 ORTHO05D004543 3.1e-91 339.7 404 44.3
Haze_09240 Corylus avellana HOM05D004162 ORTHO05D004543 3.4e-90 336.3 413 43.3
THA.LOC104812555 Tarenaya hassleriana HOM05D004162 ORTHO05D004543 3.4e-90 336.3 411 42.8
PSO339G4834 Papaver somniferum HOM05D004162 ORTHO05D004543 5.8e-90 335.5 405 44.9
Cfa011869 Carpinus fangiana HOM05D004162 ORTHO05D004543 8.4e-89 331.6 414 43.5
CARHR207050 Cardamine hirsuta HOM05D004162 ORTHO05D004543 3.2e-88 329.7 404 42.8
Potri.012G046400 Populus trichocarpa HOM05D004162 ORTHO05D004543 1.2e-87 327.8 255 60.8
PSO513G0134 Papaver somniferum HOM05D004162 ORTHO05D004543 1.3e-86 324.3 404 43.6
Rhsim02G0000200 Rhododendron simsii HOM05D004162 ORTHO05D004543 6.7e-86 322.0 341 49.3
Cc07_g00810 Coffea canephora HOM05D004162 ORTHO05D004543 1.5e-85 320.9 411 40.6
Ciclev10005180m.g Citrus clementina HOM05D004162 ORTHO05D004543 5.6e-85 318.9 381 44.4
Thhalv10028628m.g Eutrema salsugineum HOM05D004162 ORTHO05D004543 7.4e-85 318.5 426 40.8
Aa31LG5G17260 Aethionema arabicum HOM05D004162 ORTHO05D004543 8.1e-84 315.1 409 40.3
AL3G42790 Arabidopsis lyrata HOM05D004162 ORTHO05D004543 6.9e-83 312.0 427 41.2
Atru.chr1.59 Acer truncatum HOM05D004162 ORTHO05D004543 9.0e-83 311.6 409 39.9
CARHR103050 Cardamine hirsuta HOM05D004162 ORTHO05D004543 1.7e-81 307.4 427 39.6
SHI19078 Sapria himalayana HOM05D004162 ORTHO05D004543 3.8e-81 306.2 260 56.2
Sp6g08970 Schrenkiella parvula HOM05D004162 ORTHO05D004543 1.4e-80 304.3 426 40.8
AT2G05210 Arabidopsis thaliana HOM05D004162 ORTHO05D004543 9.3e-80 301.6 430 39.8
TWI75G0727 Tripterygium wilfordii HOM05D004162 ORTHO05D004543 1.2e-79 301.2 415 40.5
vmacro09753 Vaccinium macrocarpon HOM05D004162 ORTHO05D004543 6.0e-79 298.9 494 35.4
Zm00001eb433700 Zea mays HOM05D004162 ORTHO05D004543 7.9e-79 298.5 406 40.1
CDE11G0199 Ceratophyllum demersum HOM05D004162 ORTHO05D004543 1.0e-78 298.1 308 49.0
PSO832G0101 Papaver somniferum HOM05D004162 ORTHO05D004543 2.5e-77 293.5 396 42.4
BcaC06g32364 Brassica carinata HOM05D004162 ORTHO05D004543 7.4e-77 292.0 405 41.2
Hma1.2p1_0013F.1_g007880 Hydrangea macrophylla HOM05D004162 ORTHO05D004543 2.2e-73 280.4 304 46.7
VMungo0251G0610 Vigna mungo HOM05D004162 ORTHO05D004543 4.9e-73 279.3 410 41.2
BcaC04g21892 Brassica carinata HOM05D004162 ORTHO05D004543 9.3e-72 275.0 419 39.1
C09p26100 Brassica napus HOM05D004162 ORTHO05D004543 9.3e-72 275.0 419 39.1
A09p20680 Brassica napus HOM05D004162 ORTHO05D004543 1.8e-70 270.8 419 38.9
BolC9t55513H Brassica oleracea HOM05D004162 ORTHO05D004543 1.8e-70 270.8 419 37.9
BraA09t37672Z Brassica rapa HOM05D004162 ORTHO05D004543 8.7e-70 268.5 422 38.4
CANSAT78G2305 Cannabis sativa HOM05D004162 ORTHO05D004543 1.6e-68 264.2 409 39.9
BcaB07g30993 Brassica carinata HOM05D004162 ORTHO05D004543 4.1e-67 259.6 417 38.4
Gohir.A07G073600 Gossypium hirsutum HOM05D004162 ORTHO05D004543 1.2e-66 258.1 265 49.1
unitig_90.g27442 Utricularia gibba HOM05D004162 ORTHO05D004543 2.9e-65 253.4 405 37.3
Pp3c18_21900 Physcomitrium patens HOM05D004162 ORTHO05D004543 2.1e-63 247.3 438 34.2
AagrBONN_evm.TU.Sc2ySwM_228.478 Anthoceros agrestis HOM05D004162 ORTHO05D004543 1.3e-62 244.6 435 36.8
Mapoly0002s0230 Marchantia polymorpha HOM05D004162 ORTHO05D004543 1.8e-62 244.2 438 34.2
Dinv27223 Davidia involucrata HOM05D004162 ORTHO05D004543 3.3e-61 240.0 268 47.4
Lj4g0021249 Lotus japonicus HOM05D002609 ORTHO05D002820 4.1e-59 233.0 240 45.8
AUR62019586 Chenopodium quinoa HOM05D004162 ORTHO05D004543 2.6e-53 213.8 137 67.9
SMO358G0036 Selaginella moellendorffii HOM05D002930 ORTHO05D003283 6.3e-52 209.1 448 33.3
Cfa023195 Carpinus fangiana HOM05D004162 ORTHO05D004543 1.4e-51 208.0 303 39.3
TPR.G1445 Trifolium pratense HOM05D004162 ORTHO05D004543 4.1e-51 206.5 293 41.0
CDE02G0891 Ceratophyllum demersum HOM05D004162 ORTHO05D004543 5.3e-51 206.1 193 53.9
AUR62013945 Chenopodium quinoa HOM05D004162 ORTHO05D004543 1.1e-48 198.4 142 62.7
Carub.0003s2670 Capsella rubella HOM05D004162 ORTHO05D004543 5.9e-42 176.0 306 36.9
CiPaw.09G010800 Carya illinoinensis HOM05D004162 ORTHO05D004543 4.7e-39 166.4 200 43.5
Hund17739 Selenicereus undatus HOM05D004162 ORTHO05D004543 1.6e-26 124.8 123 52.8
CBR_g32246 Chara braunii HOM05D004162 ORTHO05D004543 2.3e-25 120.9 375 28.5
HPP92_005316 Vanilla planifolia HOM05D004162 ORTHO05D004543 1.8e-22 111.3 148 40.5
CBR_g34767 Chara braunii HOM05D004162 ORTHO05D004543 2.3e-17 94.4 270 27.4
Haze_09935 Corylus avellana HOM05D001513 ORTHO05D004543 1.2e-15 88.6 61 62.3
SEGI_33776 Sequoiadendron giganteum HOM05D004162 ORTHO05D004543 2.8e-15 87.4 130 34.6
QL10p030172 Quercus lobata HOM05D004162 ORTHO05D004543 6.1e-15 86.3 72 59.7
SEGI_28626 Sequoiadendron giganteum HOM05D004162 ORTHO05D004543 1.4e-14 85.1 110 42.7
Lj1g0024684 Lotus japonicus HOM05D004162 ORTHO05D004543 2.6e-13 80.9 60 63.3
VMungo0464G1157 Vigna mungo HOM05D004162 ORTHO05D004543 5.9e-10 69.7 96 40.6
ATR1149G147 Amborella trichopoda HOM05D004162 ORTHO05D004543 1.3e-09 68.6 98 39.8
VMungo0464G1805 Vigna mungo HOM05D004162 ORTHO05D004543 1.3e-09 68.6 96 42.7
SHI19079 Sapria himalayana HOM05D004162 ORTHO05D004543 2.3e-09 67.8 65 47.7
CiPaw.09G010700 Carya illinoinensis HOM05D004162 ORTHO05D004543 5.2e-06 56.6 67 44.8


User provided reference genes

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