Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv08306 Davidia involucrata HOM05D003356 ORTHO05D004362 9.5e-133 476.9 243 100.0
Dinv04314 Davidia involucrata HOM05D003356 ORTHO05D004362 8.1e-116 420.6 248 89.1
Hma1.2p1_0148F.1_g066130 Hydrangea macrophylla HOM05D003356 ORTHO05D004362 5.4e-112 407.9 248 85.5
CSS0014763 Camellia sinensis var. sinensis HOM05D003356 ORTHO05D004362 1.7e-110 402.9 248 86.3
Cc05_g12210 Coffea canephora HOM05D003356 ORTHO05D004362 1.7e-110 402.9 248 85.9
CSS0023849 Camellia sinensis var. sinensis HOM05D003356 ORTHO05D004362 2.3e-110 402.5 248 85.9
GSVIVG01014366001 Vitis vinifera HOM05D003356 ORTHO05D004362 5.1e-110 401.4 248 86.7
vmacro11852 Vaccinium macrocarpon HOM05D003356 ORTHO05D004362 1.1e-109 400.2 247 84.2
Rhsim04G0020100 Rhododendron simsii HOM05D003356 ORTHO05D004362 2.8e-108 395.6 248 83.9
Rhsim06G0197100 Rhododendron simsii HOM05D003356 ORTHO05D004362 3.6e-108 395.2 247 83.8
Actinidia35254 Actinidia chinensis HOM05D003356 ORTHO05D004362 1.1e-107 393.7 248 83.5
Lj1A846T66 Lonicera japonica HOM05D003356 ORTHO05D004362 2.4e-107 392.5 248 83.5
QL08p020494 Quercus lobata HOM05D003356 ORTHO05D004362 3.1e-107 392.1 247 82.2
vmacro09540 Vaccinium macrocarpon HOM05D003356 ORTHO05D004362 3.1e-107 392.1 248 83.1
Oeu005419.1 Olea europaea HOM05D003356 ORTHO05D004362 4.0e-107 391.7 248 80.2
Peaxi162Scf00069g01337 Petunia axillaris HOM05D003356 ORTHO05D004362 6.8e-107 391.0 248 81.0
CANSAT56G0567 Cannabis sativa HOM05D003356 ORTHO05D004362 1.2e-106 390.2 247 81.8
Duzib213G0462 Durio zibethinus HOM05D003356 ORTHO05D004362 2.0e-106 389.4 248 81.9
Thecc.07G080500 Theobroma cacao HOM05D003356 ORTHO05D004362 4.4e-106 388.3 248 81.9
TAR624G0482 Trochodendron aralioides HOM05D003356 ORTHO05D004362 4.4e-106 388.3 247 81.4
Cfa020557 Carpinus fangiana HOM05D003356 ORTHO05D004362 5.8e-106 387.9 247 82.2
CiPaw.11G172300 Carya illinoinensis HOM05D003356 ORTHO05D004362 5.8e-106 387.9 247 80.6
ClCG11G018140 Citrullus lanatus HOM05D003356 ORTHO05D004362 1.3e-105 386.7 247 82.2
MELO3C016707.2 Cucumis melo HOM05D003356 ORTHO05D004362 1.3e-105 386.7 247 82.2
CsaV3_4G033780 Cucumis sativus L. HOM05D003356 ORTHO05D004362 1.3e-105 386.7 247 82.2
Sed0005873 Sechium edule HOM05D003356 ORTHO05D004362 2.2e-105 386.0 247 81.8
Nitab4.5_0001551g0030 Nicotiana tabacum HOM05D003356 ORTHO05D004362 3.8e-105 385.2 248 81.0
Ciclev10007637m.g Citrus clementina HOM05D003356 ORTHO05D004362 1.1e-104 383.6 248 81.9
Gohir.A11G283100 Gossypium hirsutum HOM05D003356 ORTHO05D004362 1.1e-104 383.6 248 80.6
Nn1g06580 Nelumbo nucifera HOM05D003356 ORTHO05D004362 1.1e-104 383.6 246 82.1
Atru.chr2.2711 Acer truncatum HOM05D003356 ORTHO05D004362 1.4e-104 383.3 248 81.0
Manes.03G112000 Manihot esculenta HOM05D003356 ORTHO05D004362 1.4e-104 383.3 248 81.0
Nitab4.5_0003688g0040 Nicotiana tabacum HOM05D003356 ORTHO05D004362 1.9e-104 382.9 248 80.6
MSTRG.15221 Avicennia marina HOM05D003356 ORTHO05D004362 2.4e-104 382.5 247 78.5
Prupe.4G183900 Prunus persica HOM05D003356 ORTHO05D004362 4.2e-104 381.7 247 80.2
COL.COLO4_09421 Corchorus olitorius HOM05D003356 ORTHO05D004362 5.4e-104 381.3 248 80.2
MD11G1246200 Malus domestica HOM05D003356 ORTHO05D004362 5.4e-104 381.3 247 80.2
Gohir.D11G296752 Gossypium hirsutum HOM05D003356 ORTHO05D004362 9.2e-104 380.6 248 79.4
Gorai.007G321200 Gossypium raimondii HOM05D003356 ORTHO05D004362 9.2e-104 380.6 248 79.4
Potri.011G121100 Populus trichocarpa HOM05D003356 ORTHO05D004362 9.2e-104 380.6 248 80.6
RcHm_v2.0_Chr5g0034311 Rosa chinensis HOM05D003356 ORTHO05D004362 2.1e-103 379.4 246 80.9
MD03G1225500 Malus domestica HOM05D003356 ORTHO05D004362 6.0e-103 377.9 247 78.1
Lj8C157T5 Lonicera japonica HOM05D003356 ORTHO05D004362 1.0e-102 377.1 248 77.4
Haze_09456 Corylus avellana HOM05D003356 ORTHO05D004362 1.3e-102 376.7 247 80.6
FvH4_3g20420 Fragaria vesca HOM05D003356 ORTHO05D004362 1.7e-102 376.3 246 79.7
FAN11G2849 Fragaria x ananassa HOM05D003356 ORTHO05D004362 1.7e-102 376.3 246 79.7
Migut.M00849 Erythranthe guttata HOM05D003356 ORTHO05D004362 2.3e-102 375.9 248 79.8
Eucgr.F01103 Eucalyptus grandis HOM05D003356 ORTHO05D004362 2.3e-102 375.9 247 79.8
FAN16G2459 Fragaria x ananassa HOM05D003356 ORTHO05D004362 5.1e-102 374.8 246 79.3
SalBow2G3561 Salvia bowleyana HOM05D003356 ORTHO05D004362 5.1e-102 374.8 247 79.4
PGSC0003DMG400012423 Solanum tuberosum HOM05D003356 ORTHO05D004362 5.1e-102 374.8 248 79.0
FAN25G0303 Fragaria x ananassa HOM05D003356 ORTHO05D004362 6.6e-102 374.4 246 79.3
Sopen07g031420 Solanum pennellii HOM05D003356 ORTHO05D004362 6.6e-102 374.4 248 78.6
Glyma.13G278300 Glycine max HOM05D003356 ORTHO05D004362 8.7e-102 374.0 247 79.8
Lalb_Chr25g0286481 Lupinus albus HOM05D003356 ORTHO05D004362 1.1e-101 373.6 247 79.4
Manes.15G086100 Manihot esculenta HOM05D003356 ORTHO05D004362 1.1e-101 373.6 248 78.2
arahy.Tifrunner.gnm1.ann1.1CAS5W Arachis hypogaea HOM05D003356 ORTHO05D004362 1.5e-101 373.2 246 77.6
arahy.Tifrunner.gnm1.ann1.4T1P38 Arachis hypogaea HOM05D003356 ORTHO05D004362 1.5e-101 373.2 246 77.6
EL10Ac4g08143 Beta vulgaris HOM05D003356 ORTHO05D004362 1.5e-101 373.2 248 78.2
Ca_20647_v3 Cicer arietinum L. HOM05D003356 ORTHO05D004362 1.5e-101 373.2 247 77.3
Glyma.12G223200 Glycine max HOM05D003356 ORTHO05D004362 1.5e-101 373.2 247 79.8
HanXRQChr11g0328451 Helianthus annuus HOM05D003356 ORTHO05D004362 4.3e-101 371.7 248 76.6
CAN.G162.68 Capsicum annuum HOM05D003356 ORTHO05D004362 5.6e-101 371.3 248 77.4
FAN21G0641 Fragaria x ananassa HOM05D003356 ORTHO05D004362 7.3e-101 370.9 246 78.9
Solyc07g063230.3 Solanum lycopersicum HOM05D003356 ORTHO05D004362 7.3e-101 370.9 248 77.8
DCAR_019547 Daucus carota HOM05D003356 ORTHO05D004362 9.6e-101 370.5 244 78.3
MSTRG.6840 Avicennia marina HOM05D003356 ORTHO05D004362 1.2e-100 370.2 248 77.0
Lj3g0006216 Lotus japonicus HOM05D003356 ORTHO05D004362 2.8e-100 369.0 246 77.6
Glyma.12G150800 Glycine max HOM05D003356 ORTHO05D004362 4.7e-100 368.2 247 77.7
Ah.04g165130 Amaranthus hybridus HOM05D003356 ORTHO05D004362 6.2e-100 367.9 248 77.0
Phvul.005G082401 Phaseolus vulgaris HOM05D003356 ORTHO05D004362 8.1e-100 367.5 247 77.7
Sabra11G0105100 Salix brachista HOM05D003356 ORTHO05D004362 1.1e-99 367.1 248 77.0
Glyma.06G246600 Glycine max HOM05D003356 ORTHO05D004362 1.4e-99 366.7 247 78.1
MBI17_g30525_MAGBIO Magnolia biondii HOM05D003356 ORTHO05D004362 1.4e-99 366.7 247 77.3
Aqoxy4G00927 Aquilegia oxysepala HOM05D003356 ORTHO05D004362 2.4e-99 365.9 247 77.7
HanXRQChr15g0494641 Helianthus annuus HOM05D003356 ORTHO05D004362 2.4e-99 365.9 248 76.2
Sc03g0009930 Simmondsia chinensis HOM05D003356 ORTHO05D004362 3.1e-99 365.5 248 76.6
SGA_v2.0_scaffold34G13734 Striga asiatica HOM05D003356 ORTHO05D004362 9.0e-99 364.0 249 77.9
Cpa.g.sc80.47 Carica papaya HOM05D003356 ORTHO05D004362 1.5e-98 363.2 238 79.0
TPR.G31511 Trifolium pratense HOM05D003356 ORTHO05D004362 2.0e-98 362.8 247 75.3
SGA_v2.0_scaffold73G24287 Striga asiatica HOM05D003356 ORTHO05D004362 2.6e-98 362.5 249 77.5
Psat5g244680 Pisum sativum HOM05D003356 ORTHO05D004362 3.4e-98 362.1 247 76.9
Ca_01833_v3 Cicer arietinum L. HOM05D003356 ORTHO05D004362 4.4e-98 361.7 242 78.1
Gohir.A01G065000 Gossypium hirsutum HOM05D003356 ORTHO05D004362 4.4e-98 361.7 246 76.4
Lalb_Chr01g0006491 Lupinus albus HOM05D003356 ORTHO05D004362 4.4e-98 361.7 247 76.9
Gorai.002G072200 Gossypium raimondii HOM05D003356 ORTHO05D004362 5.8e-98 361.3 248 75.8
Phvul.011G150000 Phaseolus vulgaris HOM05D003356 ORTHO05D004362 5.8e-98 361.3 247 76.5
ECA236G2009 Erigeron canadensis HOM05D003356 ORTHO05D004362 9.9e-98 360.5 241 77.2
AUR62034265 Chenopodium quinoa HOM05D003356 ORTHO05D004362 1.3e-97 360.1 248 75.0
Gohir.D01G052400 Gossypium hirsutum HOM05D003356 ORTHO05D004362 1.3e-97 360.1 248 75.8
Lj3g0021569 Lotus japonicus HOM05D003356 ORTHO05D004362 1.3e-97 360.1 247 76.1
CSS0019237 Camellia sinensis var. sinensis HOM05D003356 ORTHO05D004362 2.9e-97 359.0 247 77.3
Hund22933 Selenicereus undatus HOM05D003356 ORTHO05D004362 6.4e-97 357.8 287 67.9
Lalb_Chr19g0134291 Lupinus albus HOM05D003356 ORTHO05D004362 1.4e-96 356.7 247 76.1
Medtr8g059125 Medicago truncatula HOM05D003356 ORTHO05D004362 1.4e-96 356.7 247 75.3
Actinidia01887 Actinidia chinensis HOM05D003356 ORTHO05D004362 5.4e-96 354.8 248 75.0
VMungo1127G2063 Vigna mungo HOM05D003356 ORTHO05D004362 7.1e-96 354.4 247 75.3
Ah.06g183980 Amaranthus hybridus HOM05D003356 ORTHO05D004362 1.6e-95 353.2 248 75.4
PGR083G2041 Punica granatum HOM05D003356 ORTHO05D004362 2.7e-95 352.4 247 74.9
ATR0680G284 Amborella trichopoda HOM05D003356 ORTHO05D004362 3.5e-95 352.1 248 75.0
Hma1.2p1_0881F.1_g232075 Hydrangea macrophylla HOM05D003356 ORTHO05D004362 7.8e-95 350.9 248 73.8
CDE04G3674 Ceratophyllum demersum HOM05D003356 ORTHO05D004362 1.3e-94 350.1 243 76.1
PSO675G9024 Papaver somniferum HOM05D003356 ORTHO05D004362 1.3e-94 350.1 248 73.8
PSO541G1226 Papaver somniferum HOM05D003356 ORTHO05D004362 2.3e-94 349.4 248 74.2
Lsat_1_v5_gn_7_105200 Lactuca sativa HOM05D003356 ORTHO05D004362 3.9e-94 348.6 241 75.5
Medtr2g079490 Medicago truncatula HOM05D003356 ORTHO05D004362 3.9e-94 348.6 247 73.3
unitig_37.g12574 Utricularia gibba HOM05D003356 ORTHO05D004362 3.9e-94 348.6 248 73.0
CDE06G0677 Ceratophyllum demersum HOM05D003356 ORTHO05D004362 6.6e-94 347.8 243 75.7
Carub.0003s1510 Capsella rubella HOM05D003356 ORTHO05D004362 1.5e-93 346.7 250 73.2
Sp3g13630 Schrenkiella parvula HOM05D003356 ORTHO05D004362 1.5e-93 346.7 250 73.2
AT3G15380 Arabidopsis thaliana HOM05D003356 ORTHO05D004362 2.5e-93 345.9 250 73.2
Aa31LG8G2610 Aethionema arabicum HOM05D003356 ORTHO05D004362 4.3e-93 345.1 250 73.2
CARHR090420 Cardamine hirsuta HOM05D003356 ORTHO05D004362 9.6e-93 344.0 250 72.8
Zm00001eb065890 Zea mays HOM05D003356 ORTHO05D004362 3.6e-92 342.0 247 72.5
arahy.Tifrunner.gnm1.ann1.YHI9TY Arachis hypogaea HOM05D003356 ORTHO05D004362 6.2e-92 341.3 248 73.8
Os04g0681400 Oryza sativa ssp. japonica HOM05D003356 ORTHO05D004362 1.1e-91 340.5 247 72.1
A05p34020 Brassica napus HOM05D003356 ORTHO05D004362 2.4e-91 339.3 251 70.9
BolC5t33865H Brassica oleracea HOM05D003356 ORTHO05D004362 2.4e-91 339.3 251 70.9
BraA05t22224Z Brassica rapa HOM05D003356 ORTHO05D004362 2.4e-91 339.3 251 70.9
THA.LOC104810480 Tarenaya hassleriana HOM05D003356 ORTHO05D004362 2.4e-91 339.3 251 71.3
AL3G27880 Arabidopsis lyrata HOM05D003356 ORTHO05D004362 3.1e-91 339.0 241 73.0
C05p51790 Brassica napus HOM05D003356 ORTHO05D004362 3.1e-91 339.0 251 70.9
Os04g0681600 Oryza sativa ssp. japonica HOM05D003356 ORTHO05D004362 4.0e-91 338.6 247 71.7
arahy.Tifrunner.gnm1.ann1.YA7R1N Arachis hypogaea HOM05D003356 ORTHO05D004362 9.0e-91 337.4 248 72.6
Thhalv10020171m.g Eutrema salsugineum HOM05D003356 ORTHO05D004362 3.4e-90 335.5 253 70.8
BcaC01g03876 Brassica carinata HOM05D003356 ORTHO05D004362 5.8e-90 334.7 243 71.6
C03p47660 Brassica napus HOM05D003356 ORTHO05D004362 5.8e-90 334.7 243 71.6
BolC3t17043H Brassica oleracea HOM05D003356 ORTHO05D004362 2.2e-89 332.8 243 71.2
A03p39290 Brassica napus HOM05D003356 ORTHO05D004362 2.9e-89 332.4 249 69.9
BraA03t13080Z Brassica rapa HOM05D003356 ORTHO05D004362 1.4e-88 330.1 244 70.9
DCAR_004079 Daucus carota HOM05D003356 ORTHO05D004362 7.9e-87 324.3 247 70.4
Aqoxy1G02485 Aquilegia oxysepala HOM05D003356 ORTHO05D004362 2.3e-86 322.8 247 69.2
Zm00001eb198690 Zea mays HOM05D003356 ORTHO05D004362 8.7e-86 320.9 247 67.2
HPP92_028116 Vanilla planifolia HOM05D003356 ORTHO05D004362 7.4e-85 317.8 247 66.0
AL3G27910 Arabidopsis lyrata HOM05D003356 ORTHO05D004362 3.7e-84 315.5 232 72.4
Hund02220 Selenicereus undatus HOM05D003356 ORTHO05D004362 4.8e-84 315.1 310 56.5
SEGI_21847 Sequoiadendron giganteum HOM05D003356 ORTHO05D004362 8.1e-84 314.3 248 67.3
Actinidia05623 Actinidia chinensis HOM05D003356 ORTHO05D004362 1.7e-81 306.6 248 68.1
Lsat_1_v5_gn_7_18881 Lactuca sativa HOM05D003356 ORTHO05D004362 2.9e-81 305.8 248 66.9
AUR62029372 Chenopodium quinoa HOM05D003356 ORTHO05D004362 1.9e-80 303.1 248 67.3
HanXRQChr15g0482461 Helianthus annuus HOM05D003356 ORTHO05D004362 3.2e-80 302.4 247 66.8
ECA236G3466 Erigeron canadensis HOM05D003356 ORTHO05D004362 3.0e-78 295.8 258 64.3
BcaB06g29569 Brassica carinata HOM05D003356 ORTHO05D004362 5.6e-77 291.6 200 74.5
Dinv07551 Davidia involucrata HOM05D003356 ORTHO05D004362 1.3e-76 290.4 186 79.0
Psat4g135280 Pisum sativum HOM05D003356 ORTHO05D004362 5.3e-75 285.0 188 75.0
THA.LOC104818067 Tarenaya hassleriana HOM05D003356 ORTHO05D004362 5.8e-74 281.6 187 75.4
HPP92_020871 Vanilla planifolia HOM05D003356 ORTHO05D004362 5.8e-74 281.6 223 64.6
Mapoly0001s0233 Marchantia polymorpha HOM05D003356 ORTHO05D004362 9.7e-69 264.2 238 58.0
Pp3c9_13290 Physcomitrium patens HOM05D003356 ORTHO05D004362 6.3e-68 261.5 238 57.1
AL230U10050 Arabidopsis lyrata HOM05D003356 ORTHO05D004362 3.6e-63 245.7 227 62.1
TWI39G1274 Tripterygium wilfordii HOM05D003356 ORTHO05D004362 1.5e-50 203.8 128 86.7
Pp3c13_16790 Physcomitrium patens HOM05D003356 ORTHO05D004362 4.5e-50 202.2 254 44.1
CBR_g50441 Chara braunii HOM05D003356 ORTHO05D004362 5.9e-50 201.8 223 49.8
Actinidia18761 Actinidia chinensis HOM05D003356 ORTHO05D004362 1.0e-49 201.1 120 84.2
CBR_g34641 Chara braunii HOM05D003356 ORTHO05D004362 1.1e-48 197.6 236 46.2
CBR_g34644 Chara braunii HOM05D003356 ORTHO05D004362 7.2e-48 194.9 236 47.0
TAR626G1858 Trochodendron aralioides HOM05D003356 ORTHO05D004362 4.7e-47 192.2 118 85.6
TAR626G0399 Trochodendron aralioides HOM05D003356 ORTHO05D004362 3.0e-46 189.5 116 79.3
PRCOL_00001307 Prasinoderma coloniale HOM05D003356 ORTHO05D004362 3.0e-38 162.9 245 37.6
PRCOL_00004496 Prasinoderma coloniale HOM05D003356 ORTHO05D004362 6.3e-36 155.2 218 38.5
Cre01.g021500 Chlamydomonas reinhardtii HOM05D003356 ORTHO05D004362 1.2e-34 151.0 214 37.9
MCO09G800 Micromonas commoda HOM05D003356 ORTHO05D004362 1.6e-31 140.6 225 39.6
AagrBONN_evm.TU.Sc2ySwM_362.248 Anthoceros agrestis HOM05D003356 ORTHO05D004362 2.3e-30 136.7 227 36.1
MCO04G353 Micromonas commoda HOM05D003356 ORTHO05D004362 1.3e-28 131.0 221 36.2
HPP92_014741 Vanilla planifolia HOM05D003356 ORTHO05D004362 2.2e-28 130.2 138 51.4
Psat7g229040 Pisum sativum HOM05D003356 ORTHO05D004362 2.4e-27 126.7 80 77.5
BcaC05g28976 Brassica carinata HOM05D003356 ORTHO05D004362 1.8e-22 110.5 73 79.5
arahy.Tifrunner.gnm1.ann1.4J6IUL Arachis hypogaea HOM05D003356 ORTHO05D004362 8.9e-22 108.2 108 59.3
arahy.Tifrunner.gnm1.ann1.71RN23 Arachis hypogaea HOM05D003356 ORTHO05D014021 4.5e-18 95.9 86 58.1
HPP92_014740 Vanilla planifolia HOM05D003356 ORTHO05D031488 2.8e-15 86.7 77 61.0
arahy.Tifrunner.gnm1.ann1.H20E9K Arachis hypogaea HOM05D003356 ORTHO05D031488 2.3e-14 83.6 59 74.6
arahy.Tifrunner.gnm1.ann1.7XQU0B Arachis hypogaea HOM05D003356 ORTHO05D083362 5.2e-14 82.4 106 46.2
TPR.G17977 Trifolium pratense HOM05D003356 ORTHO05D030555 2.9e-12 76.6 51 74.5
Rhsim04G0019900 Rhododendron simsii HOM05D055487 ORTHO05D338639 2.0e-10 70.5 61 62.3
C06p20510 Brassica napus HOM05D000996 ORTHO05D021865 5.0e-09 65.9 67 46.3
BolC6t37232H Brassica oleracea HOM05D000996 ORTHO05D021865 5.0e-09 65.9 67 46.3
A01p38720 Brassica napus HOM05D003356 ORTHO05D019431 6.6e-09 65.5 41 78.0
BcaB04g20929 Brassica carinata HOM05D003356 ORTHO05D031488 1.9e-08 63.9 55 67.3
arahy.Tifrunner.gnm1.ann1.93B9CG Arachis hypogaea HOM05D003356 ORTHO05D004362 4.3e-08 62.8 44 70.5
BcaC09g48503 Brassica carinata HOM05D003356 ORTHO05D019431 5.6e-08 62.4 36 80.6
arahy.Tifrunner.gnm1.ann1.QJV3PU Arachis hypogaea HOM05D003356 ORTHO05D086117 7.3e-08 62.0 67 52.2


User provided reference genes

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