Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv08153 Davidia involucrata HOM05D004252 ORTHO05D005101 0.0e+00 2345.9 1204 100.0
Dinv20302 Davidia involucrata HOM05D004252 ORTHO05D005101 0.0e+00 2028.1 1209 87.4
CSS0026350 Camellia sinensis var. sinensis HOM05D004252 ORTHO05D005101 0.0e+00 1885.5 1210 80.9
Cfa006427 Carpinus fangiana HOM05D004252 ORTHO05D005101 0.0e+00 1815.4 1224 77.5
QL03p026982 Quercus lobata HOM05D004252 ORTHO05D005101 0.0e+00 1812.7 1238 77.1
Haze_04358 Corylus avellana HOM05D004252 ORTHO05D005101 0.0e+00 1808.1 1224 77.4
TAR362G1238 Trochodendron aralioides HOM05D004252 ORTHO05D005101 0.0e+00 1763.4 1219 75.9
CiPaw.08G123300 Carya illinoinensis HOM05D004252 ORTHO05D005101 0.0e+00 1761.5 1230 75.2
Thecc.05G283200 Theobroma cacao HOM05D004252 ORTHO05D005101 0.0e+00 1739.5 1218 75.0
Manes.09G152800 Manihot esculenta HOM05D004252 ORTHO05D005101 0.0e+00 1729.1 1218 74.1
Rhsim04G0066800 Rhododendron simsii HOM05D004252 ORTHO05D005101 0.0e+00 1728.4 1220 75.7
Prupe.6G343600 Prunus persica HOM05D004252 ORTHO05D005101 0.0e+00 1724.9 1218 73.8
Actinidia32806 Actinidia chinensis HOM05D004252 ORTHO05D005101 0.0e+00 1720.3 1209 75.7
vmacro20358 Vaccinium macrocarpon HOM05D004252 ORTHO05D005101 0.0e+00 1717.6 1284 72.1
Duzib128G1785 Durio zibethinus HOM05D004252 ORTHO05D005101 0.0e+00 1715.7 1219 73.8
COL.COLO4_15351 Corchorus olitorius HOM05D004252 ORTHO05D005101 0.0e+00 1713.0 1218 74.1
Ciclev10000014m.g Citrus clementina HOM05D004252 ORTHO05D005101 0.0e+00 1709.1 1210 74.1
Lj1A1079G39 Lonicera japonica HOM05D004252 ORTHO05D005101 0.0e+00 1706.4 1230 73.9
Nn3g19509 Nelumbo nucifera HOM05D004252 ORTHO05D005101 0.0e+00 1699.1 1217 72.6
Potri.005G053700 Populus trichocarpa HOM05D004252 ORTHO05D005101 0.0e+00 1695.6 1219 73.2
Potri.013G041201 Populus trichocarpa HOM05D004252 ORTHO05D005101 0.0e+00 1691.8 1219 73.7
Sabra05G0047100 Salix brachista HOM05D004252 ORTHO05D005101 0.0e+00 1686.8 1218 72.4
TAR633G0655 Trochodendron aralioides HOM05D004252 ORTHO05D005101 0.0e+00 1686.0 1222 73.4
MD04G1224900 Malus domestica HOM05D004252 ORTHO05D005101 0.0e+00 1680.6 1218 71.8
Gorai.004G246800 Gossypium raimondii HOM05D004252 ORTHO05D005101 0.0e+00 1675.2 1218 72.1
Sabra13G0038000 Salix brachista HOM05D004252 ORTHO05D005101 0.0e+00 1673.3 1219 73.1
Duzib177G1152 Durio zibethinus HOM05D004252 ORTHO05D005101 0.0e+00 1671.4 1218 73.0
CANSAT54G1217 Cannabis sativa HOM05D004252 ORTHO05D005101 0.0e+00 1669.8 1216 72.2
Gohir.D08G232300 Gossypium hirsutum HOM05D004252 ORTHO05D005101 0.0e+00 1669.1 1218 71.9
MD12G1241600 Malus domestica HOM05D004252 ORTHO05D005101 0.0e+00 1668.3 1218 71.7
RcHm_v2.0_Chr3g0451091 Rosa chinensis HOM05D004252 ORTHO05D005101 0.0e+00 1656.7 1219 71.5
GSVIVG01021781001 Vitis vinifera HOM05D004252 ORTHO05D005101 0.0e+00 1644.8 1209 73.6
TWI12G0933 Tripterygium wilfordii HOM05D004252 ORTHO05D005101 0.0e+00 1638.2 1218 71.7
Gohir.A08G215700 Gossypium hirsutum HOM05D004252 ORTHO05D005101 0.0e+00 1629.0 1218 70.6
Cc02_g30700 Coffea canephora HOM05D004252 ORTHO05D005101 0.0e+00 1627.5 1210 70.8
Peaxi162Scf00282g00418 Petunia axillaris HOM05D004252 ORTHO05D005101 0.0e+00 1620.5 1209 70.5
FvH4_6g02880 Fragaria vesca HOM05D004252 ORTHO05D005101 0.0e+00 1607.8 1219 69.7
Solyc01g097320.3 Solanum lycopersicum HOM05D004252 ORTHO05D005101 0.0e+00 1602.8 1208 69.7
Glyma.19G245100 Glycine max HOM05D004252 ORTHO05D005101 0.0e+00 1601.6 1216 68.3
FAN09G2874 Fragaria x ananassa HOM05D004252 ORTHO05D005101 0.0e+00 1596.6 1223 69.2
arahy.Tifrunner.gnm1.ann1.9CBY7M Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 1592.4 1216 67.9
VMungo0540G0159 Vigna mungo HOM05D004252 ORTHO05D005101 0.0e+00 1590.5 1217 68.3
Phvul.006G101900 Phaseolus vulgaris HOM05D004252 ORTHO05D005101 0.0e+00 1590.1 1217 68.0
CsaV3_2G004140 Cucumis sativus L. HOM05D004252 ORTHO05D005101 0.0e+00 1588.9 1217 69.6
Glyma.03G247300 Glycine max HOM05D004252 ORTHO05D005101 0.0e+00 1585.5 1216 67.9
FAN02G2888 Fragaria x ananassa HOM05D004252 ORTHO05D005101 0.0e+00 1583.2 1223 68.8
FAN05G2119 Fragaria x ananassa HOM05D004252 ORTHO05D005101 0.0e+00 1580.1 1223 69.1
Sed0020402 Sechium edule HOM05D004252 ORTHO05D005101 0.0e+00 1574.3 1217 69.2
Sed0025221 Sechium edule HOM05D004252 ORTHO05D005101 0.0e+00 1569.3 1218 68.7
PGR142G2894 Punica granatum HOM05D004252 ORTHO05D005101 0.0e+00 1564.7 1222 68.3
arahy.Tifrunner.gnm1.ann1.39XKQR Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 1562.4 1216 67.3
arahy.Tifrunner.gnm1.ann1.YD0KDM Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 1562.4 1216 67.1
PSO210G6431 Papaver somniferum HOM05D004252 ORTHO05D005101 0.0e+00 1552.7 1220 67.8
Lalb_Chr04g0262241 Lupinus albus HOM05D004252 ORTHO05D005101 0.0e+00 1550.8 1214 67.3
PSO832G2970 Papaver somniferum HOM05D004252 ORTHO05D005101 0.0e+00 1550.4 1219 67.7
Psat3g007080 Pisum sativum HOM05D004252 ORTHO05D005101 0.0e+00 1548.9 1211 67.5
MELO3C004380.2 Cucumis melo HOM05D004252 ORTHO05D005101 0.0e+00 1542.3 1284 65.4
arahy.Tifrunner.gnm1.ann1.QZ0BKE Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 1541.9 1216 66.6
CAN.G134.97 Capsicum annuum HOM05D004252 ORTHO05D005101 0.0e+00 1536.2 1208 67.0
Lj1g0020341 Lotus japonicus HOM05D004252 ORTHO05D005101 0.0e+00 1535.8 1219 66.9
Medtr7g115190 Medicago truncatula HOM05D004252 ORTHO05D005101 0.0e+00 1521.1 1210 67.2
Ca_09423_v3 Cicer arietinum L. HOM05D004252 ORTHO05D005101 0.0e+00 1515.0 1221 66.6
Ca_29790_v3 Cicer arietinum L. HOM05D004252 ORTHO05D005101 0.0e+00 1515.0 1221 66.6
DCAR_023243 Daucus carota HOM05D004252 ORTHO05D005101 0.0e+00 1503.4 1211 67.3
Aqoxy5G01125 Aquilegia oxysepala HOM05D004252 ORTHO05D005101 0.0e+00 1501.9 1209 65.8
Eucgr.B02119 Eucalyptus grandis HOM05D004252 ORTHO05D005101 0.0e+00 1499.2 1212 65.8
ClCG02G016630 Citrullus lanatus HOM05D004252 ORTHO05D005101 0.0e+00 1486.5 1217 66.4
Sc20g0000330 Simmondsia chinensis HOM05D004252 ORTHO05D005101 0.0e+00 1485.7 1218 66.0
Migut.B01091 Erythranthe guttata HOM05D004252 ORTHO05D005101 0.0e+00 1483.0 1209 65.3
DCAR_014751 Daucus carota HOM05D004252 ORTHO05D005101 0.0e+00 1478.4 1209 66.5
arahy.Tifrunner.gnm1.ann1.795G7S Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 1473.0 1199 65.5
SalBow3G2512 Salvia bowleyana HOM05D004252 ORTHO05D005101 0.0e+00 1467.6 1202 65.1
AUR62004951 Chenopodium quinoa HOM05D004252 ORTHO05D005101 0.0e+00 1464.1 1212 66.1
Hund06974 Selenicereus undatus HOM05D004252 ORTHO05D005101 0.0e+00 1461.8 1221 64.5
EL10Ac4g09148 Beta vulgaris HOM05D004252 ORTHO05D005101 0.0e+00 1460.7 1211 64.5
Sopen01g040990 Solanum pennellii HOM05D004252 ORTHO05D005101 0.0e+00 1458.0 1095 69.0
TPR.G6924 Trifolium pratense HOM05D004252 ORTHO05D005101 0.0e+00 1454.9 1213 64.6
ECA240G2739 Erigeron canadensis HOM05D004252 ORTHO05D005101 0.0e+00 1450.3 1205 64.6
Aqoxy6G01279 Aquilegia oxysepala HOM05D004252 ORTHO05D005101 0.0e+00 1445.3 1211 64.2
Medtr1g087060 Medicago truncatula HOM05D004252 ORTHO05D005101 0.0e+00 1421.0 1211 63.1
HanXRQChr13g0411361 Helianthus annuus HOM05D004252 ORTHO05D005101 0.0e+00 1370.9 1210 62.4
HanXRQChr03g0080781 Helianthus annuus HOM05D004252 ORTHO05D005101 0.0e+00 1369.4 1212 62.5
Lsat_1_v5_gn_5_53600 Lactuca sativa HOM05D004252 ORTHO05D005101 0.0e+00 1344.7 1216 62.0
THA.LOC104818630 Tarenaya hassleriana HOM05D004252 ORTHO05D005101 0.0e+00 1323.5 1209 61.4
CDE06G0814 Ceratophyllum demersum HOM05D004252 ORTHO05D005101 0.0e+00 1313.1 1227 58.6
ATR0665G632 Amborella trichopoda HOM05D004252 ORTHO05D005101 0.0e+00 1301.6 1221 57.5
CiPaw.07G067400 Carya illinoinensis HOM05D004252 ORTHO05D005101 0.0e+00 1299.6 1231 60.6
THA.LOC104821672 Tarenaya hassleriana HOM05D004252 ORTHO05D005101 0.0e+00 1295.4 1213 60.2
AT3G04740 Arabidopsis thaliana HOM05D004252 ORTHO05D005101 0.0e+00 1273.8 1218 59.1
AL3G14870 Arabidopsis lyrata HOM05D004252 ORTHO05D005101 0.0e+00 1271.5 1214 58.8
Thhalv10019885m.g Eutrema salsugineum HOM05D004252 ORTHO05D005101 0.0e+00 1271.5 1215 58.6
Sp3g03590 Schrenkiella parvula HOM05D004252 ORTHO05D005101 0.0e+00 1271.5 1217 58.4
Nitab4.5_0001592g0060 Nicotiana tabacum HOM05D004252 ORTHO05D005101 0.0e+00 1252.3 1125 60.5
AUR62001006 Chenopodium quinoa HOM05D004252 ORTHO05D005101 0.0e+00 1228.0 1214 57.7
Carub.0003s0391 Capsella rubella HOM05D004252 ORTHO05D005101 0.0e+00 1226.1 1218 57.1
Aa31LG5G15140 Aethionema arabicum HOM05D004252 ORTHO05D005101 0.0e+00 1218.4 1218 56.6
unitig_699.g19676 Utricularia gibba HOM05D004252 ORTHO05D005101 0.0e+00 1211.4 1178 57.8
A05p42820 Brassica napus HOM05D004252 ORTHO05D005101 0.0e+00 1200.7 1212 56.4
C05p62540 Brassica napus HOM05D004252 ORTHO05D005101 0.0e+00 1197.6 1212 56.2
BolC5t34909H Brassica oleracea HOM05D004252 ORTHO05D005101 0.0e+00 1196.0 1212 56.2
Nitab4.5_0008996g0010 Nicotiana tabacum HOM05D004252 ORTHO05D005101 0.0e+00 1191.8 1208 56.3
BraA05t22970Z Brassica rapa HOM05D004252 ORTHO05D005101 0.0e+00 1186.8 1233 55.4
HPP92_026425 Vanilla planifolia HOM05D004252 ORTHO05D005101 0.0e+00 1110.9 1216 51.6
FAN14G3887 Fragaria x ananassa HOM05D004252 ORTHO05D005101 0.0e+00 1095.5 885 67.3
Os09g0281900 Oryza sativa ssp. japonica HOM05D004252 ORTHO05D005101 0.0e+00 1077.8 1223 50.4
Zm00001eb097360 Zea mays HOM05D004252 ORTHO05D005101 3.9e-304 1048.5 1220 48.9
Oeu002657.3 Olea europaea HOM05D004252 ORTHO05D005101 4.5e-260 902.1 855 58.9
BcaB04g19300 Brassica carinata HOM05D004252 ORTHO05D005101 3.8e-259 899.0 1129 48.5
SHI18417 Sapria himalayana HOM05D004252 ORTHO05D005101 9.1e-253 877.9 1487 40.1
Mapoly0110s0011 Marchantia polymorpha HOM05D004252 ORTHO05D005101 3.6e-241 839.3 1342 41.3
CDE02G2007 Ceratophyllum demersum HOM05D004252 ORTHO05D005101 2.7e-228 796.6 646 64.4
SMO118G0536 Selaginella moellendorffii HOM05D004252 ORTHO05D005101 4.0e-208 729.6 1229 40.1
Pp3c9_5080 Physcomitrium patens HOM05D004252 ORTHO05D005101 9.6e-202 708.4 1279 37.8
Ah.06g192370 Amaranthus hybridus HOM05D004252 ORTHO05D005101 8.1e-201 705.3 734 54.8
AagrBONN_evm.TU.Sc2ySwM_368.2529 Anthoceros agrestis HOM05D004252 ORTHO05D005101 4.0e-200 703.0 1308 38.5
Pp3c9_4280 Physcomitrium patens HOM05D004252 ORTHO05D005101 2.9e-198 696.8 1297 36.8
arahy.Tifrunner.gnm1.ann1.8T8W7S Arachis hypogaea HOM05D004252 ORTHO05D005101 5.6e-194 682.6 610 61.3
Ah.06g192380 Amaranthus hybridus HOM05D004252 ORTHO05D005101 1.7e-190 671.0 479 74.1
Atru.chr2.824 Acer truncatum HOM05D004252 ORTHO05D005101 6.1e-172 609.4 465 69.7
Cpa.g.c42029 Carica papaya HOM05D004252 ORTHO05D005101 2.3e-163 580.9 360 81.9
Oeu027472.1 Olea europaea HOM05D004252 ORTHO05D005101 3.9e-163 580.1 361 80.9
SEGI_19302 Sequoiadendron giganteum HOM05D004252 ORTHO05D005101 3.3e-154 550.4 707 47.4
Os08g0332800 Oryza sativa ssp. japonica HOM05D004252 ORTHO05D005101 1.3e-153 548.5 436 64.0
arahy.Tifrunner.gnm1.ann1.E2R4RP Arachis hypogaea HOM05D004252 ORTHO05D005101 6.3e-153 546.2 489 59.7
CDE02G1705 Ceratophyllum demersum HOM05D004252 ORTHO05D005101 1.2e-140 505.4 516 52.9
Oeu021056.1 Olea europaea HOM05D004252 ORTHO05D005101 3.8e-134 483.8 317 74.4
SGA_v2.0_scaffold172G38984 Striga asiatica HOM05D004252 ORTHO05D005101 5.7e-130 469.9 337 66.8
CARHR078990 Cardamine hirsuta HOM05D004252 ORTHO05D005101 6.3e-129 466.5 586 49.5
Cpa.g.sc2756.3 Carica papaya HOM05D004252 ORTHO05D005101 1.2e-127 462.2 441 60.1
arahy.Tifrunner.gnm1.ann1.82F4VT Arachis hypogaea HOM05D004252 ORTHO05D005101 3.5e-127 460.7 401 61.8
Cpa.g.sc2756.2 Carica papaya HOM05D004252 ORTHO05D005101 2.3e-126 458.0 310 74.5
Oeu027473.1 Olea europaea HOM05D004252 ORTHO05D005101 3.5e-95 354.4 426 50.7
Atru.chr2.825 Acer truncatum HOM05D004252 ORTHO05D005101 1.1e-53 216.5 131 78.6
Atru.chr2.826 Acer truncatum HOM05D004252 ORTHO05D005101 7.2e-48 197.2 136 79.4
Aqoxy1G03371 Aquilegia oxysepala HOM05D004252 ORTHO05D005101 1.4e-43 183.0 123 73.2
Atru.chr2.823 Acer truncatum HOM05D004252 ORTHO05D005101 1.8e-22 112.8 52 96.2
SEGI_18631 Sequoiadendron giganteum HOM05D000173 ORTHO05D006747 4.0e-22 111.7 118 51.7
Cpa.g.sc1346.1 Carica papaya HOM05D004252 ORTHO05D005101 5.7e-21 107.8 83 74.7
Sopen00g013550 Solanum pennellii HOM05D004252 ORTHO05D005101 4.1e-19 101.7 84 70.2
CAN.G1116.5 Capsicum annuum HOM05D004252 ORTHO05D005101 6.6e-17 94.4 83 65.1
PRCOL_00001722 Prasinoderma coloniale HOM05D000936 ORTHO05D005107 3.3e-16 92.0 578 22.0
SEGI_17147 Sequoiadendron giganteum HOM05D004252 ORTHO05D005101 8.0e-15 87.4 66 68.2
Psat3g129120 Pisum sativum HOM05D004252 ORTHO05D005101 3.4e-13 82.0 68 58.8
Psat3g129080 Pisum sativum HOM05D004252 ORTHO05D005101 4.4e-13 81.6 68 58.8
Gohir.D01G110850 Gossypium hirsutum HOM05D004252 ORTHO05D005101 2.2e-12 79.3 34 97.1
Gohir.D04G023525 Gossypium hirsutum HOM05D004252 ORTHO05D005101 2.2e-12 79.3 34 97.1
Gohir.D10G142750 Gossypium hirsutum HOM05D004252 ORTHO05D005101 2.2e-12 79.3 34 97.1
Gohir.D12G169250 Gossypium hirsutum HOM05D004252 ORTHO05D005101 2.2e-12 79.3 34 97.1
Gorai.004G036500 Gossypium raimondii HOM05D004252 ORTHO05D005101 2.2e-12 79.3 34 97.1
Gohir.D03G054650 Gossypium hirsutum HOM05D004252 ORTHO05D005101 1.1e-11 77.0 34 94.1
SEGI_02854 Sequoiadendron giganteum HOM05D004252 ORTHO05D005101 1.1e-11 77.0 92 47.8
MCO11G870 Micromonas commoda HOM05D004252 ORTHO05D005101 9.2e-11 73.9 208 26.9
Cre03.g190550 Chlamydomonas reinhardtii HOM05D004252 ORTHO05D005101 2.3e-06 59.3 179 28.5


User provided reference genes

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