Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv07738 Davidia involucrata HOM05D020813 ORTHO05D017152 1.3e-84 316.2 151 100.0
Dinv03188 Davidia involucrata HOM05D020813 ORTHO05D017152 2.6e-72 275.4 140 95.7
Dinv07737 Davidia involucrata HOM05D001845 ORTHO05D001878 1.7e-63 246.1 228 58.8
Dinv07740 Davidia involucrata HOM05D020813 ORTHO05D017152 5.0e-39 164.9 135 63.0
QL03p035463 Quercus lobata HOM05D001845 ORTHO05D001878 1.3e-26 123.6 149 49.0
Oeu044022.2 Olea europaea HOM05D001845 ORTHO05D001878 2.2e-26 122.9 136 47.1
Lj6A739T46 Lonicera japonica HOM05D001845 ORTHO05D001878 6.3e-26 121.3 105 59.0
QL03p035510 Quercus lobata HOM05D001845 ORTHO05D001878 1.1e-25 120.6 214 36.0
Dinv18658 Davidia involucrata HOM05D020813 ORTHO05D017152 1.8e-25 119.8 67 89.6
QL03p035421 Quercus lobata HOM05D001845 ORTHO05D001878 3.1e-25 119.0 146 47.3
Atru.chr11.950 Acer truncatum HOM05D035584 ORTHO05D017152 3.4e-24 115.5 149 46.3
Potri.010G107400 Populus trichocarpa HOM05D001845 ORTHO05D001878 2.5e-22 109.4 99 59.6
MD13G1029300 Malus domestica HOM05D001845 ORTHO05D001878 9.4e-22 107.5 240 29.2
GSVIVG01011669001 Vitis vinifera HOM05D001845 ORTHO05D001878 1.6e-21 106.7 95 53.7
Cc11_g07030 Coffea canephora HOM05D001845 ORTHO05D001878 2.7e-21 105.9 139 45.3
Haze_10892 Corylus avellana HOM05D001845 ORTHO05D001878 1.0e-20 104.0 241 32.0
Sabra10G0078500 Salix brachista HOM05D001845 ORTHO05D001878 1.8e-20 103.2 118 51.7
CANSAT01G0729 Cannabis sativa HOM05D001845 ORTHO05D001878 3.0e-20 102.4 141 44.7
Peaxi162Scf00376g00834 Petunia axillaris HOM05D001845 ORTHO05D001878 3.9e-20 102.1 105 47.6
Cpa.g.sc2.208 Carica papaya HOM05D001845 ORTHO05D001878 2.6e-19 99.4 202 34.2
Cfa015014 Carpinus fangiana HOM05D001845 ORTHO05D001878 2.6e-19 99.4 241 31.1
Atru.chr11.948 Acer truncatum HOM05D001845 ORTHO05D001878 7.4e-19 97.8 99 49.5
Prupe.1G332300 Prunus persica HOM05D001845 ORTHO05D001878 4.8e-18 95.1 106 47.2
TAR374G1633 Trochodendron aralioides HOM05D001845 ORTHO05D001878 6.3e-18 94.7 145 40.7
Manes.17G083400 Manihot esculenta HOM05D001845 ORTHO05D001878 8.2e-18 94.4 133 44.4
DCAR_026798 Daucus carota HOM05D001845 ORTHO05D001878 1.2e-16 90.5 135 40.0
Nitab4.5_0000135g0090 Nicotiana tabacum HOM05D001845 ORTHO05D001878 7.7e-16 87.8 115 40.0
RcHm_v2.0_Chr4g0443241 Rosa chinensis HOM05D001845 ORTHO05D001878 1.0e-15 87.4 106 45.3
Sc14g0006930 Simmondsia chinensis HOM05D001845 ORTHO05D001878 2.2e-15 86.3 114 41.2
FvH4_4g33730 Fragaria vesca HOM05D001845 ORTHO05D001878 8.5e-15 84.3 106 42.5
Phvul.003G019900 Phaseolus vulgaris HOM05D001845 ORTHO05D001878 8.5e-15 84.3 173 34.7
CiPaw.05G189600 Carya illinoinensis HOM05D001845 ORTHO05D001878 1.1e-14 84.0 81 51.9
FAN07G0211 Fragaria x ananassa HOM05D001845 ORTHO05D001878 1.1e-14 84.0 106 42.5
FAN17G1953 Fragaria x ananassa HOM05D001845 ORTHO05D001878 1.5e-14 83.6 106 42.5
Nitab4.5_0021152g0010 Nicotiana tabacum HOM05D001845 ORTHO05D001878 1.9e-14 83.2 123 38.2
FAN22G0681 Fragaria x ananassa HOM05D001845 ORTHO05D001878 9.4e-14 80.9 106 43.4
TPR.G36896 Trifolium pratense HOM05D001845 ORTHO05D001878 1.6e-13 80.1 147 38.1
TWI74G0432 Tripterygium wilfordii HOM05D001845 ORTHO05D001878 3.6e-13 79.0 100 41.0
Ca_12553_v3 Cicer arietinum L. HOM05D001845 ORTHO05D001878 2.3e-12 76.3 153 37.9
Psat6g045560 Pisum sativum HOM05D001845 ORTHO05D001878 6.7e-12 74.7 146 36.3
Nn1g06748 Nelumbo nucifera HOM05D001845 ORTHO05D001878 2.6e-11 72.8 111 38.7
Medtr1g032260 Medicago truncatula HOM05D001845 ORTHO05D001878 3.3e-11 72.4 152 35.5
Dinv03185 Davidia involucrata HOM05D020813 ORTHO05D185271 4.4e-11 72.0 42 85.7
Dinv13579 Davidia involucrata HOM05D020813 ORTHO05D017152 4.4e-11 72.0 57 63.2
COL.COLO4_16578 Corchorus olitorius HOM05D001845 ORTHO05D001878 7.5e-11 71.2 94 40.4
Duzib268G0485 Durio zibethinus HOM05D001845 ORTHO05D001495 9.7e-11 70.9 104 37.5
Aqoxy3G00041 Aquilegia oxysepala HOM05D001845 ORTHO05D001878 4.8e-10 68.6 108 40.7
PGR102G2523 Punica granatum HOM05D001845 ORTHO05D001878 1.2e-08 63.9 107 38.3
arahy.Tifrunner.gnm1.ann1.WYRK4G Arachis hypogaea HOM05D000994 ORTHO05D001878 1.6e-08 63.5 104 39.4
CDE05G1822 Ceratophyllum demersum HOM05D001845 ORTHO05D001878 5.9e-08 61.6 147 35.4
MBI13_g00277_MAGBIO Magnolia biondii HOM05D001845 ORTHO05D001878 1.0e-07 60.8 162 31.5
arahy.Tifrunner.gnm1.ann1.8ET3C3 Arachis hypogaea HOM05D001845 ORTHO05D001878 1.3e-07 60.5 108 38.0
Oeu023867.1 Olea europaea HOM05D000694 ORTHO05D000530 2.9e-07 59.3 72 45.8
Aa31LG4G10320 Aethionema arabicum HOM05D001845 ORTHO05D001878 3.8e-07 58.9 131 33.6
MBI13_g40318_MAGBIO Magnolia biondii HOM05D001845 ORTHO05D001878 3.8e-07 58.9 106 34.9
ClCG01G006510 Citrullus lanatus HOM05D001845 ORTHO05D001878 1.5e-06 57.0 140 33.6
Migut.E00470 Erythranthe guttata HOM05D001845 ORTHO05D001878 1.5e-06 57.0 127 37.8
Thhalv10019608m.g Eutrema salsugineum HOM05D001590 ORTHO05D001495 1.5e-06 57.0 92 38.0
Glyma.02G084500 Glycine max HOM05D001845 ORTHO05D001878 1.9e-06 56.6 132 31.8
AT1G70650 Arabidopsis thaliana HOM05D001590 ORTHO05D001495 5.5e-06 55.1 98 35.7
CARHR063900 Cardamine hirsuta HOM05D001845 ORTHO05D001878 5.5e-06 55.1 131 33.6
PGSC0003DMG400025225 Solanum tuberosum HOM05D001845 ORTHO05D001878 7.2e-06 54.7 118 31.4


User provided reference genes

Program Settings