Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv07729 Davidia involucrata HOM05D006178 ORTHO05D007504 5.5e-161 570.9 278 100.0
Haze_10879 Corylus avellana HOM05D006178 ORTHO05D007504 1.2e-110 403.7 252 74.2
Hma1.2p1_0277F.1_g111690 Hydrangea macrophylla HOM05D006178 ORTHO05D007504 1.5e-110 403.3 249 79.5
Actinidia38440 Actinidia chinensis HOM05D006178 ORTHO05D007504 7.1e-108 394.4 247 78.9
CiPaw.05G188700 Carya illinoinensis HOM05D006178 ORTHO05D007504 7.1e-108 394.4 247 74.9
TWI74G1561 Tripterygium wilfordii HOM05D006178 ORTHO05D007504 4.6e-107 391.7 245 74.3
MD13G1020300 Malus domestica HOM05D006178 ORTHO05D007504 2.5e-105 386.0 247 74.5
Atru.chr11.922 Acer truncatum HOM05D006178 ORTHO05D007504 1.6e-104 383.3 247 74.5
FvH4_4g33550 Fragaria vesca HOM05D006178 ORTHO05D007504 1.8e-103 379.8 247 72.9
Lj6C738G3 Lonicera japonica HOM05D001486 ORTHO05D007504 1.8e-103 379.8 241 75.9
Prupe.1G333400 Prunus persica HOM05D006178 ORTHO05D007504 2.4e-103 379.4 254 72.0
Duzib251G0568 Durio zibethinus HOM05D006178 ORTHO05D007504 9.0e-103 377.5 247 74.1
Thecc.02G292800 Theobroma cacao HOM05D006178 ORTHO05D007504 9.0e-103 377.5 246 73.2
GSVIVG01011660001 Vitis vinifera HOM05D006178 ORTHO05D007504 9.0e-103 377.5 247 72.1
FAN07G2930 Fragaria x ananassa HOM05D006178 ORTHO05D007504 4.4e-102 375.2 247 71.7
FAN12G1191 Fragaria x ananassa HOM05D006178 ORTHO05D007504 8.4e-101 370.9 259 69.5
FAN22G2090 Fragaria x ananassa HOM05D006178 ORTHO05D007504 8.4e-101 370.9 259 69.5
QL03p035908 Quercus lobata HOM05D006178 ORTHO05D007504 5.4e-100 368.2 274 65.7
CANSAT01G0234 Cannabis sativa HOM05D006178 ORTHO05D007504 7.1e-100 367.9 258 69.8
FAN17G1905 Fragaria x ananassa HOM05D006178 ORTHO05D007504 3.5e-99 365.5 258 68.2
COL.COLO4_16591 Corchorus olitorius HOM05D006178 ORTHO05D007504 8.7e-98 360.9 247 70.9
CsaV3_5G015780 Cucumis sativus L. HOM05D006178 ORTHO05D007504 1.1e-97 360.5 249 67.1
Psat6g046400 Pisum sativum HOM05D006178 ORTHO05D007504 1.9e-97 359.8 245 68.2
Gohir.A01G146700 Gossypium hirsutum HOM05D006178 ORTHO05D007504 5.6e-97 358.2 250 68.8
MELO3C016656.2 Cucumis melo HOM05D006178 ORTHO05D007504 7.3e-97 357.8 251 66.9
DCAR_007330 Daucus carota HOM05D006178 ORTHO05D007504 1.3e-96 357.1 248 70.2
Gorai.002G172000 Gossypium raimondii HOM05D006178 ORTHO05D007504 2.8e-96 355.9 247 69.6
Lsat_1_v5_gn_3_53481 Lactuca sativa HOM05D006178 ORTHO05D007504 3.6e-96 355.5 251 70.9
Gohir.D01G139900 Gossypium hirsutum HOM05D006178 ORTHO05D007504 8.1e-96 354.4 247 69.2
Lj2g0017740 Lotus japonicus HOM05D006178 ORTHO05D007504 8.1e-96 354.4 243 68.3
arahy.Tifrunner.gnm1.ann1.56CUD8 Arachis hypogaea HOM05D006178 ORTHO05D007504 4.0e-95 352.1 235 68.9
Cpa.g.sc2.193 Carica papaya HOM05D006178 ORTHO05D007504 6.9e-95 351.3 248 69.4
Ciclev10015964m.g Citrus clementina HOM05D006178 ORTHO05D007504 6.9e-95 351.3 249 68.3
Oeu044010.1 Olea europaea HOM05D006178 ORTHO05D007504 1.5e-94 350.1 226 75.2
ClCG09G011820 Citrullus lanatus HOM05D006178 ORTHO05D007504 5.8e-94 348.2 255 65.1
arahy.Tifrunner.gnm1.ann1.M99K8C Arachis hypogaea HOM05D006178 ORTHO05D007504 1.3e-93 347.1 235 68.1
HanXRQChr15g0476731 Helianthus annuus HOM05D006178 ORTHO05D007504 1.3e-93 347.1 241 69.3
CAN.G511.14 Capsicum annuum HOM05D006178 ORTHO05D007504 2.2e-93 346.3 248 66.5
Cc11_g07280 Coffea canephora HOM05D006178 ORTHO05D007504 2.2e-93 346.3 249 67.5
Medtr1g032430 Medicago truncatula HOM05D006178 ORTHO05D007504 2.2e-93 346.3 243 65.4
EL10Ac2g02672 Beta vulgaris HOM05D006178 ORTHO05D007504 4.9e-93 345.1 240 67.1
PGSC0003DMG400028747 Solanum tuberosum HOM05D006178 ORTHO05D007504 6.4e-93 344.7 242 66.1
SalBow2G2905 Salvia bowleyana HOM05D006178 ORTHO05D007504 5.4e-92 341.7 248 66.5
Glyma.02G085100 Glycine max HOM05D006178 ORTHO05D007504 7.1e-92 341.3 243 65.0
Ah.02g128010 Amaranthus hybridus HOM05D006178 ORTHO05D007504 9.3e-92 340.9 247 65.2
Eucgr.B02675 Eucalyptus grandis HOM05D006178 ORTHO05D007504 9.3e-92 340.9 248 67.3
TPR.G36937 Trifolium pratense HOM05D006178 ORTHO05D007504 1.2e-91 340.5 244 66.0
Sopen07g004780 Solanum pennellii HOM05D006178 ORTHO05D007504 2.1e-91 339.7 254 65.0
Solyc07g008850.3 Solanum lycopersicum HOM05D006178 ORTHO05D007504 2.7e-91 339.3 250 64.4
AUR62014248 Chenopodium quinoa HOM05D006178 ORTHO05D007504 5.1e-90 335.1 266 60.2
Sc04g0008610 Simmondsia chinensis HOM05D006178 ORTHO05D007504 8.7e-90 334.3 253 66.0
AUR62038473 Chenopodium quinoa HOM05D006178 ORTHO05D007504 5.6e-89 331.6 266 59.8
Potri.010G106400 Populus trichocarpa HOM05D006178 ORTHO05D007504 5.6e-89 331.6 249 64.7
Ca_12542_v3 Cicer arietinum L. HOM05D006178 ORTHO05D007504 7.4e-89 331.3 238 65.5
Manes.15G134200 Manihot esculenta HOM05D006178 ORTHO05D007504 1.8e-87 326.6 253 64.0
Lalb_Chr17g0338441 Lupinus albus HOM05D006178 ORTHO05D007504 2.4e-87 326.2 223 67.7
PSO017G4246 Papaver somniferum HOM05D006178 ORTHO05D007504 1.2e-86 323.9 239 66.5
Migut.E00482 Erythranthe guttata HOM05D006178 ORTHO05D007504 2.6e-86 322.8 245 66.1
Peaxi162Scf00937g00336 Petunia axillaris HOM05D006178 ORTHO05D007504 2.6e-86 322.8 248 62.1
ECA246G2474 Erigeron canadensis HOM05D006178 ORTHO05D007504 9.9e-86 320.9 245 65.3
Sed0021590 Sechium edule HOM05D006178 ORTHO05D007504 1.3e-85 320.5 227 64.8
Thhalv10007963m.g Eutrema salsugineum HOM05D006178 ORTHO05D007504 2.2e-85 319.7 243 63.0
PSO478G4000 Papaver somniferum HOM05D006178 ORTHO05D007504 4.9e-85 318.5 239 64.9
Nitab4.5_0000018g0160 Nicotiana tabacum HOM05D006178 ORTHO05D007504 1.4e-84 317.0 216 69.4
THA.LOC104821906 Tarenaya hassleriana HOM05D006178 ORTHO05D007504 7.1e-84 314.7 247 61.5
Hund24927 Selenicereus undatus HOM05D006178 ORTHO05D007504 6.0e-83 311.6 329 51.1
A08p26780 Brassica napus HOM05D006178 ORTHO05D007504 1.9e-81 306.6 243 61.7
BcaC01g01670 Brassica carinata HOM05D006178 ORTHO05D007504 3.3e-81 305.8 247 61.1
Sp1g23080 Schrenkiella parvula HOM05D006178 ORTHO05D007504 7.4e-81 304.7 244 59.8
AT1G24793 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 9.6e-81 304.3 241 60.6
AT1G25054 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 9.6e-81 304.3 241 60.6
AT1G25145 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 9.6e-81 304.3 241 60.6
AT1G25210 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 9.6e-81 304.3 241 60.6
AL1G40190 Arabidopsis lyrata HOM05D006178 ORTHO05D007504 1.3e-80 303.9 241 61.4
BraA08t34624Z Brassica rapa HOM05D006178 ORTHO05D007504 2.1e-80 303.1 243 60.1
Carub.0001s2539 Capsella rubella HOM05D006178 ORTHO05D007504 2.1e-80 303.1 236 62.7
Phvul.003G019200 Phaseolus vulgaris HOM05D006178 ORTHO05D007504 6.2e-80 301.6 243 58.8
C03p73180 Brassica napus HOM05D006178 ORTHO05D007504 1.1e-79 300.8 249 60.6
BolC3t19616H Brassica oleracea HOM05D006178 ORTHO05D007504 1.1e-79 300.8 249 60.6
CSS0005024 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 1.4e-79 300.4 200 75.0
CSS0001732 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 1.2e-78 297.4 192 76.0
BcaB03g12042 Brassica carinata HOM05D006178 ORTHO05D007504 1.5e-78 297.0 232 61.2
Nitab4.5_0009975g0010 Nicotiana tabacum HOM05D006178 ORTHO05D007504 1.5e-78 297.0 240 61.7
vmacro00552 Vaccinium macrocarpon HOM05D006178 ORTHO05D007504 2.7e-75 286.2 247 63.2
Aa31LG7G9330 Aethionema arabicum HOM05D006178 ORTHO05D007504 7.9e-75 284.6 297 51.2
MBI13_g29562_MAGBIO Magnolia biondii HOM05D006178 ORTHO05D007504 3.0e-74 282.7 247 59.1
Aqoxy3G00007 Aquilegia oxysepala HOM05D006178 ORTHO05D007504 1.5e-70 270.4 252 59.5
Gohir.D08G117400 Gossypium hirsutum HOM05D006178 ORTHO05D007504 2.6e-70 269.6 193 65.3
Gorai.001G151600 Gossypium raimondii HOM05D006178 ORTHO05D007504 5.9e-70 268.5 192 65.1
Gohir.D07G139600 Gossypium hirsutum HOM05D006178 ORTHO05D007504 2.2e-69 266.5 192 65.1
Gohir.D13G135551 Gossypium hirsutum HOM05D006178 ORTHO05D007504 2.9e-69 266.2 203 61.1
Gohir.D10G193800 Gossypium hirsutum HOM05D006178 ORTHO05D007504 5.0e-69 265.4 192 65.1
Gorai.010G050600 Gossypium raimondii HOM05D006178 ORTHO05D007504 1.9e-68 263.5 192 63.5
HPP92_013128 Vanilla planifolia HOM05D006178 ORTHO05D007504 7.2e-68 261.5 254 57.1
unitig_22.g5599 Utricularia gibba HOM05D000369 ORTHO05D000253 9.4e-68 261.2 257 58.4
CDE05G0668 Ceratophyllum demersum HOM05D006178 ORTHO05D007504 1.8e-66 256.9 230 57.8
ATR0753G153 Amborella trichopoda HOM05D006178 ORTHO05D007504 6.7e-66 255.0 234 56.4
TAR629G3300 Trochodendron aralioides HOM05D006178 ORTHO05D007504 1.4e-63 247.3 194 62.4
Os03g0223900 Oryza sativa ssp. japonica HOM05D006178 ORTHO05D007504 2.4e-63 246.5 249 51.8
Sabra10G0077800 Salix brachista HOM05D006178 ORTHO05D007504 3.1e-63 246.1 214 59.8
Gohir.D11G251901 Gossypium hirsutum HOM05D006178 ORTHO05D007504 9.1e-63 244.6 192 62.0
Zm00001eb009130 Zea mays HOM05D006178 ORTHO05D007504 5.5e-60 235.3 255 52.2
SGA_v2.0_scaffold23G10206 Striga asiatica HOM05D006178 ORTHO05D007504 1.4e-58 230.7 215 57.2
Gorai.005G149500 Gossypium raimondii HOM05D006178 ORTHO05D007504 8.8e-58 228.0 193 58.5
RcHm_v2.0_Chr7g0235121 Rosa chinensis HOM05D006178 ORTHO05D007504 2.2e-56 223.4 144 74.3
Pp3c3_1850 Physcomitrium patens HOM05D006178 ORTHO05D007504 8.5e-53 211.5 230 49.6
Gorai.005G145500 Gossypium raimondii HOM05D006178 ORTHO05D007504 2.5e-52 209.9 206 54.9
Mapoly0012s0127 Marchantia polymorpha HOM05D006178 ORTHO05D007504 4.7e-51 205.7 237 46.8
HPP92_013158 Vanilla planifolia HOM05D006178 ORTHO05D007504 1.2e-41 174.5 153 58.8
Gohir.D11G228700 Gossypium hirsutum HOM05D006178 ORTHO05D007504 1.4e-39 167.5 121 65.3
Gorai.007G245600 Gossypium raimondii HOM05D006178 ORTHO05D007504 1.8e-39 167.2 123 63.4
SMO232G0119 Selaginella moellendorffii HOM05D006178 ORTHO05D007504 1.8e-39 167.2 237 42.2
SEGI_10880 Sequoiadendron giganteum HOM05D006178 ORTHO05D007504 2.9e-37 159.8 189 44.4
Gorai.009G391300 Gossypium raimondii HOM05D006178 ORTHO05D007504 1.9e-36 157.1 108 68.5
CBR_g12524 Chara braunii HOM05D006178 ORTHO05D007504 3.2e-36 156.4 320 34.4
AagrBONN_evm.TU.Sc2ySwM_340.423 Anthoceros agrestis HOM05D006178 ORTHO05D007504 1.0e-34 151.4 188 45.2
CARHR026360 Cardamine hirsuta HOM05D006178 ORTHO05D007504 9.1e-31 138.3 121 55.4
Nn3g18364 Nelumbo nucifera HOM05D006178 ORTHO05D007504 7.7e-30 135.2 116 58.6
PRCOL_00001866 Prasinoderma coloniale HOM05D006178 ORTHO05D007504 1.4e-26 124.4 238 35.3
MCO09G291 Micromonas commoda HOM05D006178 ORTHO05D007504 1.8e-23 114.0 225 36.9
Glyma.13G258800 Glycine max HOM05D006178 ORTHO05D007504 1.0e-18 98.2 85 51.8
Glyma.13G368200 Glycine max HOM05D006178 ORTHO05D007504 1.0e-18 98.2 85 51.8
CSS0004101 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 4.0e-18 96.3 55 83.6
CSS0007559 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 4.0e-18 96.3 55 83.6
Ca_29306_v3 Cicer arietinum L. HOM05D001616 ORTHO05D007504 8.3e-16 88.6 226 28.3
Cre16.g653350 Chlamydomonas reinhardtii HOM05D006178 ORTHO05D007504 7.0e-15 85.5 201 32.3
TAR629G1361 Trochodendron aralioides HOM05D006178 ORTHO05D007504 8.0e-11 72.0 41 82.9
QL03p035827 Quercus lobata HOM05D006178 ORTHO05D007504 3.7e-08 63.2 38 71.1
QL02p029395 Quercus lobata HOM05D002431 ORTHO05D002543 3.2e-07 60.1 43 60.5
MCO05G527 Micromonas commoda HOM05D014289 ORTHO05D018957 2.1e-06 57.4 94 42.6
Gohir.D08G060150 Gossypium hirsutum HOM05D006178 ORTHO05D007504 4.6e-06 56.2 39 64.1


User provided reference genes

Program Settings