Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv07361 Davidia involucrata HOM05D000173 ORTHO05D004400 2.4e-30 134.8 67 100.0
SEGI_01343 Sequoiadendron giganteum HOM05D000173 ORTHO05D004400 3.8e-15 84.3 39 97.4
Cc04_g07400 Coffea canephora HOM05D000173 ORTHO05D004400 1.1e-14 82.8 63 65.1
Actinidia35080 Actinidia chinensis HOM05D000173 ORTHO05D004400 1.4e-14 82.4 38 100.0
Ah.09g233670 Amaranthus hybridus HOM05D000173 ORTHO05D004400 1.4e-14 82.4 38 100.0
arahy.Tifrunner.gnm1.ann1.1T6SIZ Arachis hypogaea HOM05D000173 ORTHO05D004400 1.4e-14 82.4 38 100.0
arahy.Tifrunner.gnm1.ann1.DFGQ2J Arachis hypogaea HOM05D000173 ORTHO05D004400 1.4e-14 82.4 38 100.0
arahy.Tifrunner.gnm1.ann1.NI3B5C Arachis hypogaea HOM05D000173 ORTHO05D004400 1.4e-14 82.4 38 100.0
arahy.Tifrunner.gnm1.ann1.SSG76K Arachis hypogaea HOM05D000173 ORTHO05D004400 1.4e-14 82.4 38 100.0
EL10Ac5g11421 Beta vulgaris HOM05D000173 ORTHO05D004400 1.4e-14 82.4 38 100.0
CSS0004352 Camellia sinensis var. sinensis HOM05D000173 ORTHO05D004400 1.4e-14 82.4 38 100.0
CSS0020862 Camellia sinensis var. sinensis HOM05D000173 ORTHO05D004400 1.4e-14 82.4 38 100.0
CANSAT35G1697 Cannabis sativa HOM05D000173 ORTHO05D004400 1.4e-14 82.4 38 100.0
CiPaw.15G127800 Carya illinoinensis HOM05D000173 ORTHO05D004400 1.4e-14 82.4 38 100.0
CiPaw.16G084900 Carya illinoinensis HOM05D000173 ORTHO05D004400 1.4e-14 82.4 38 100.0
Ca_14793_v3 Cicer arietinum L. HOM05D000173 ORTHO05D004400 1.4e-14 82.4 38 100.0
Ca_23131_v3 Cicer arietinum L. HOM05D000173 ORTHO05D004400 1.4e-14 82.4 38 100.0
COL.COLO4_38438 Corchorus olitorius HOM05D000173 ORTHO05D004400 1.4e-14 82.4 38 100.0
MELO3C017295.2 Cucumis melo HOM05D000173 ORTHO05D004400 1.4e-14 82.4 38 100.0
CsaV3_1G003700 Cucumis sativus L. HOM05D000173 ORTHO05D004400 1.4e-14 82.4 38 100.0
DCAR_011346 Daucus carota HOM05D000173 ORTHO05D004400 1.4e-14 82.4 38 100.0
Dinv40423 Davidia involucrata HOM05D000173 ORTHO05D004400 1.4e-14 82.4 38 100.0
Duzib168G1916 Durio zibethinus HOM05D000173 ORTHO05D004400 1.4e-14 82.4 38 100.0
Eucgr.B00704 Eucalyptus grandis HOM05D000173 ORTHO05D004400 1.4e-14 82.4 38 100.0
FvH4_3g17390 Fragaria vesca HOM05D000173 ORTHO05D004400 1.4e-14 82.4 38 100.0
FAN11G2015 Fragaria x ananassa HOM05D000173 ORTHO05D004400 1.4e-14 82.4 38 100.0
FAN16G2607 Fragaria x ananassa HOM05D000173 ORTHO05D004400 1.4e-14 82.4 38 100.0
FAN21G3174 Fragaria x ananassa HOM05D000173 ORTHO05D004400 1.4e-14 82.4 38 100.0
FAN25G2209 Fragaria x ananassa HOM05D000173 ORTHO05D004400 1.4e-14 82.4 38 100.0
Glyma.07G118800 Glycine max HOM05D000173 ORTHO05D004400 1.4e-14 82.4 38 100.0
Glyma.08G040300 Glycine max HOM05D000173 ORTHO05D004400 1.4e-14 82.4 38 100.0
Gohir.A13G215300 Gossypium hirsutum HOM05D000173 ORTHO05D004400 1.4e-14 82.4 38 100.0
Gorai.013G249800 Gossypium raimondii HOM05D000173 ORTHO05D004400 1.4e-14 82.4 38 100.0
Lj2g0020115 Lotus japonicus HOM05D000173 ORTHO05D004400 1.4e-14 82.4 38 100.0
Lalb_Chr05g0222631 Lupinus albus HOM05D000173 ORTHO05D004400 1.4e-14 82.4 38 100.0
Manes.01G012800 Manihot esculenta HOM05D000173 ORTHO05D004400 1.4e-14 82.4 38 100.0
Medtr5g066400 Medicago truncatula HOM05D000173 ORTHO05D004400 1.4e-14 82.4 38 100.0
Medtr8g464900 Medicago truncatula HOM05D000173 ORTHO05D004400 1.4e-14 82.4 38 100.0
Nn1g06280 Nelumbo nucifera HOM05D000173 ORTHO05D004400 1.4e-14 82.4 38 100.0
Peaxi162Scf00804g00008 Petunia axillaris HOM05D000173 ORTHO05D004400 1.4e-14 82.4 38 100.0
Potri.012G061300 Populus trichocarpa HOM05D000173 ORTHO05D004400 1.4e-14 82.4 38 100.0
QL10p023744 Quercus lobata HOM05D000173 ORTHO05D004400 1.4e-14 82.4 38 100.0
RcHm_v2.0_Chr5g0028921 Rosa chinensis HOM05D000173 ORTHO05D004400 1.4e-14 82.4 38 100.0
Sabra15G0075200 Salix brachista HOM05D000173 ORTHO05D004400 1.4e-14 82.4 38 100.0
Sed0004858 Sechium edule HOM05D000173 ORTHO05D004400 1.4e-14 82.4 38 100.0
Sed0017324 Sechium edule HOM05D000173 ORTHO05D004400 1.4e-14 82.4 38 100.0
Hund24237 Selenicereus undatus HOM05D000173 ORTHO05D004400 1.4e-14 82.4 59 71.2
Thecc.09G221900 Theobroma cacao HOM05D000173 ORTHO05D004400 1.4e-14 82.4 38 100.0
TPR.G32123 Trifolium pratense HOM05D000173 ORTHO05D004400 1.4e-14 82.4 38 100.0
TAR365G0790 Trochodendron aralioides HOM05D000173 ORTHO05D004400 1.4e-14 82.4 38 100.0
HPP92_025882 Vanilla planifolia HOM05D000173 ORTHO05D004400 1.4e-14 82.4 38 100.0
VMungo0331G0580 Vigna mungo HOM05D000173 ORTHO05D004400 1.4e-14 82.4 38 100.0
GSVIVG01008255001 Vitis vinifera HOM05D000173 ORTHO05D004400 1.4e-14 82.4 38 100.0
Aa31LG7G3120 Aethionema arabicum HOM05D000173 ORTHO05D004400 1.9e-14 82.0 38 97.4
AT1G73910 Arabidopsis thaliana HOM05D000173 ORTHO05D004400 1.9e-14 82.0 38 97.4
MSTRG.4553 Avicennia marina HOM05D000173 ORTHO05D004400 1.9e-14 82.0 38 97.4
MSTRG.9268 Avicennia marina HOM05D000173 ORTHO05D004400 1.9e-14 82.0 38 97.4
BcaB03g12979 Brassica carinata HOM05D003541 ORTHO05D004095 1.9e-14 82.0 38 97.4
BcaB07g31853 Brassica carinata HOM05D000173 ORTHO05D004400 1.9e-14 82.0 38 97.4
BcaC05g25737 Brassica carinata HOM05D000173 ORTHO05D004400 1.9e-14 82.0 38 97.4
BcaNung05445 Brassica carinata HOM05D000173 ORTHO05D004400 1.9e-14 82.0 38 97.4
A08p30410 Brassica napus HOM05D000173 ORTHO05D004400 1.9e-14 82.0 38 97.4
CARHR019060 Cardamine hirsuta HOM05D000173 ORTHO05D004400 1.9e-14 82.0 38 97.4
Cpa.g.sc13.24 Carica papaya HOM05D000173 ORTHO05D004400 1.9e-14 82.0 38 97.4
Cc06_g15350 Coffea canephora HOM05D000173 ORTHO05D004400 1.9e-14 82.0 38 97.4
ECA236G4399 Erigeron canadensis HOM05D000173 ORTHO05D004400 1.9e-14 82.0 38 97.4
Thhalv10007641m.g Eutrema salsugineum HOM05D000173 ORTHO05D004400 1.9e-14 82.0 38 97.4
Thhalv10018569m.g Eutrema salsugineum HOM05D000173 ORTHO05D004400 1.9e-14 82.0 38 97.4
Glyma.03G107300 Glycine max HOM05D000173 ORTHO05D004400 1.9e-14 82.0 38 97.4
HanXRQChr11g0323331 Helianthus annuus HOM05D000173 ORTHO05D004400 1.9e-14 82.0 38 97.4
Lj9C429T7 Lonicera japonica HOM05D000173 ORTHO05D004400 1.9e-14 82.0 38 97.4
Nitab4.5_0000208g0190 Nicotiana tabacum HOM05D000173 ORTHO05D004400 1.9e-14 82.0 38 97.4
PGR042G0409 Punica granatum HOM05D000173 ORTHO05D004400 1.9e-14 82.0 38 97.4
SalBow5G1673 Salvia bowleyana HOM05D000173 ORTHO05D004400 1.9e-14 82.0 38 97.4
Sp1g16390 Schrenkiella parvula HOM05D000173 ORTHO05D004400 1.9e-14 82.0 38 97.4
THA.LOC104813899 Tarenaya hassleriana HOM05D000173 ORTHO05D004400 1.9e-14 82.0 38 97.4
Atru.chr9.786 Acer truncatum HOM05D000173 ORTHO05D004400 2.4e-14 81.6 38 97.4
ATR0064G093 Amborella trichopoda HOM05D000173 ORTHO05D004400 2.4e-14 81.6 38 97.4
ATR0737G114 Amborella trichopoda HOM05D000173 ORTHO05D004400 2.4e-14 81.6 38 97.4
AL1G30880 Arabidopsis lyrata HOM05D000173 ORTHO05D004400 2.4e-14 81.6 38 94.7
AT1G18450 Arabidopsis thaliana HOM05D000173 ORTHO05D004400 2.4e-14 81.6 38 94.7
Carub.0001s1805 Capsella rubella HOM05D000173 ORTHO05D004400 2.4e-14 81.6 38 94.7
Carub.0001s1808 Capsella rubella HOM05D000173 ORTHO05D004400 2.4e-14 81.6 38 94.7
Carub.0002s2068 Capsella rubella HOM05D000173 ORTHO05D004400 2.4e-14 81.6 38 94.7
AUR62025879 Chenopodium quinoa HOM05D000173 ORTHO05D004400 2.4e-14 81.6 38 97.4
MD03G1252000 Malus domestica HOM05D000173 ORTHO05D004400 2.4e-14 81.6 38 97.4
Oeu055898.1 Olea europaea HOM05D000173 ORTHO05D004400 2.4e-14 81.6 38 94.7
Prupe.4G154200 Prunus persica HOM05D000173 ORTHO05D004400 2.4e-14 81.6 38 97.4
Sc04g0003650 Simmondsia chinensis HOM05D000173 ORTHO05D004400 2.4e-14 81.6 38 97.4
TWI81G0665 Tripterygium wilfordii HOM05D000173 ORTHO05D004400 2.4e-14 81.6 38 97.4
C08p18620 Brassica napus HOM05D000173 ORTHO05D004400 3.2e-14 81.3 60 71.7
Haze_04561 Corylus avellana HOM05D000173 ORTHO05D004400 3.2e-14 81.3 38 97.4
Lsat_1_v5_gn_8_109740 Lactuca sativa HOM05D000173 ORTHO05D004400 3.2e-14 81.3 52 75.0
Migut.D01593 Erythranthe guttata HOM05D000173 ORTHO05D004400 4.2e-14 80.9 38 94.7
Phvul.010G044300 Phaseolus vulgaris HOM05D000173 ORTHO05D004400 4.2e-14 80.9 38 97.4
Potri.015G053100 Populus trichocarpa HOM05D000173 ORTHO05D004400 4.2e-14 80.9 38 97.4
Sp5g29110 Schrenkiella parvula HOM05D000173 ORTHO05D004400 4.2e-14 80.9 38 97.4
Solyc12g037980.2 Solanum lycopersicum HOM05D000173 ORTHO05D004400 4.2e-14 80.9 38 97.4
Sopen12g017690 Solanum pennellii HOM05D000173 ORTHO05D004400 4.2e-14 80.9 38 97.4
PGSC0003DMG400021766 Solanum tuberosum HOM05D000173 ORTHO05D004400 4.2e-14 80.9 38 97.4
TWI15G1235 Tripterygium wilfordii HOM05D000173 ORTHO05D004400 4.2e-14 80.9 38 94.7
Aqoxy2G03970 Aquilegia oxysepala HOM05D000173 ORTHO05D004400 7.1e-14 80.1 38 94.7
Aqoxy5G04178 Aquilegia oxysepala HOM05D000173 ORTHO05D004400 7.1e-14 80.1 38 94.7
CDE07G0020 Ceratophyllum demersum HOM05D000173 ORTHO05D004400 7.1e-14 80.1 38 97.4
Lalb_Chr07g0195271 Lupinus albus HOM05D000173 ORTHO05D004400 7.1e-14 80.1 38 92.1
PSO017G6263 Papaver somniferum HOM05D000173 ORTHO05D004400 7.1e-14 80.1 38 94.7
MD11G1273400 Malus domestica HOM05D000173 ORTHO05D004400 9.3e-14 79.7 38 92.1
PGR083G2056 Punica granatum HOM05D000173 ORTHO05D004400 9.3e-14 79.7 38 94.7
SHI30372 Sapria himalayana HOM05D000023 ORTHO05D000014 9.3e-14 79.7 41 92.7
Gohir.D13G219000 Gossypium hirsutum HOM05D000173 ORTHO05D004400 1.6e-13 79.0 38 97.4
Lalb_Chr12g0210411 Lupinus albus HOM05D000173 ORTHO05D004400 1.6e-13 79.0 38 92.1
Oeu024320.1 Olea europaea HOM05D000173 ORTHO05D004400 1.6e-13 79.0 38 92.1
SMO347G0056 Selaginella moellendorffii HOM05D000173 ORTHO05D004400 1.6e-13 79.0 38 92.1
CBR_g46675 Chara braunii HOM05D000173 ORTHO05D004400 2.1e-13 78.6 40 87.5
AUR62029850 Chenopodium quinoa HOM05D000173 ORTHO05D004400 2.1e-13 78.6 39 89.7
ClCG06G014940 Citrullus lanatus HOM05D000173 ORTHO05D004400 2.1e-13 78.6 36 100.0
PSO063G4537 Papaver somniferum HOM05D000173 ORTHO05D004400 2.1e-13 78.6 38 92.1
AagrBONN_evm.TU.Sc2ySwM_228.3208 Anthoceros agrestis HOM05D000173 ORTHO05D004400 2.7e-13 78.2 38 92.1
SGA_v2.0_scaffold62G21627 Striga asiatica HOM05D000173 ORTHO05D004400 3.5e-13 77.8 37 89.2
Pp3c15_24010 Physcomitrium patens HOM05D000173 ORTHO05D004400 6.0e-13 77.0 38 89.5
Rhsim12G0144100 Rhododendron simsii HOM05D000173 ORTHO05D004400 6.0e-13 77.0 35 100.0
SalBow5G1565 Salvia bowleyana HOM05D000173 ORTHO05D004400 6.0e-13 77.0 38 92.1
Mapoly0063s0059 Marchantia polymorpha HOM05D000173 ORTHO05D004400 7.9e-13 76.6 38 89.5
vmacro22486 Vaccinium macrocarpon HOM05D000173 ORTHO05D004400 1.8e-12 75.5 35 100.0
Os08g0137200 Oryza sativa ssp. japonica HOM05D000173 ORTHO05D004400 3.0e-12 74.7 38 86.8
Zm00001eb000800 Zea mays HOM05D000173 ORTHO05D004400 3.0e-12 74.7 38 86.8
Medtr5g066390 Medicago truncatula HOM05D000027 ORTHO05D000066 3.9e-12 74.3 35 97.1
CBR_g46712 Chara braunii HOM05D000173 ORTHO05D004400 5.1e-12 73.9 38 86.8
vmacro16454 Vaccinium macrocarpon HOM05D000173 ORTHO05D004400 8.7e-12 73.2 34 100.0
VMungo0251G1487 Vigna mungo HOM05D000173 ORTHO05D004400 8.7e-12 73.2 34 100.0
BolC5t30372H Brassica oleracea HOM05D000173 ORTHO05D004400 1.1e-11 72.8 34 97.1
BolC8t49489H Brassica oleracea HOM05D003541 ORTHO05D004095 1.1e-11 72.8 34 97.1
BraA06t24575Z Brassica rapa HOM05D000173 ORTHO05D004400 1.1e-11 72.8 34 97.1
BraA08t34974Z Brassica rapa HOM05D000173 ORTHO05D004400 1.1e-11 72.8 34 97.1
unitig_736.g22474 Utricularia gibba HOM05D000173 ORTHO05D004400 1.1e-11 72.8 34 97.1
Cre06.g249200 Chlamydomonas reinhardtii HOM05D000173 ORTHO05D004400 2.5e-11 71.6 41 73.2
Duzib093G1840 Durio zibethinus HOM05D000173 ORTHO05D004400 2.5e-11 71.6 38 89.5
Pp3c9_24230 Physcomitrium patens HOM05D000173 ORTHO05D004400 5.6e-11 70.5 38 78.9
Ca_14791_v3 Cicer arietinum L. HOM05D000173 ORTHO05D004400 7.4e-11 70.1 32 100.0
Medtr8g007445 Medicago truncatula HOM05D000173 ORTHO05D004400 7.4e-11 70.1 38 92.1
Hma1.2p1_0340F.1_g129760 Hydrangea macrophylla HOM05D000173 ORTHO05D004400 4.8e-10 67.4 31 100.0
C09p46060 Brassica napus HOM05D000173 ORTHO05D004400 1.1e-09 66.2 58 63.8
Duzib093G1728 Durio zibethinus HOM05D000173 ORTHO05D004400 1.4e-09 65.9 38 84.2
BcaC07g37216 Brassica carinata HOM05D000173 ORTHO05D023886 6.9e-09 63.5 32 90.6
BcaC04g20234 Brassica carinata HOM05D000173 ORTHO05D004400 9.0e-09 63.2 33 87.9
BcaC02g09051 Brassica carinata HOM05D000173 ORTHO05D004400 5.8e-08 60.5 33 84.8
BcaC07g37803 Brassica carinata HOM05D038468 ORTHO05D004400 1.0e-07 59.7 38 76.3
Duzib264G0116 Durio zibethinus HOM05D003820 ORTHO05D004540 2.9e-07 58.2 39 71.8
Haze_27234 Corylus avellana HOM05D000173 ORTHO05D000316 3.8e-07 57.8 34 70.6
PRCOL_00006066 Prasinoderma coloniale HOM05D000173 ORTHO05D004400 4.9e-07 57.4 42 61.9
Haze_26538 Corylus avellana HOM05D000173 ORTHO05D000316 6.5e-07 57.0 42 54.8
Cfa021031 Carpinus fangiana HOM05D000173 ORTHO05D000316 8.4e-07 56.6 34 70.6
FvH4_6g50670 Fragaria vesca HOM05D000173 ORTHO05D004400 1.1e-06 56.2 38 71.1
CBR_g86671 Chara braunii HOM05D000173 ORTHO05D000316 4.2e-06 54.3 38 63.2
PRCOL_00000747 Prasinoderma coloniale HOM05D000173 ORTHO05D000316 5.5e-06 53.9 38 65.8
SEGI_11726 Sequoiadendron giganteum HOM05D000173 ORTHO05D000316 5.5e-06 53.9 38 63.2
SEGI_36986 Sequoiadendron giganteum HOM05D000173 ORTHO05D000316 7.1e-06 53.5 38 63.2
Migut.C00434 Erythranthe guttata HOM05D000173 ORTHO05D000316 9.3e-06 53.1 37 54.1
SEGI_15252 Sequoiadendron giganteum HOM05D000173 ORTHO05D000316 9.3e-06 53.1 38 63.2


User provided reference genes

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