Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv07265 Davidia involucrata HOM05D005859 ORTHO05D007576 5.1e-102 374.8 244 100.0
Dinv07263 Davidia involucrata HOM05D005859 ORTHO05D007576 5.5e-72 275.0 136 99.3
Cfa013324 Carpinus fangiana HOM05D005859 ORTHO05D007576 3.4e-66 255.8 136 92.6
Gohir.D09G062800 Gossypium hirsutum HOM05D005859 ORTHO05D007576 3.4e-66 255.8 136 91.9
Actinidia22411 Actinidia chinensis HOM05D005859 ORTHO05D007576 1.0e-65 254.2 136 92.6
Haze_21816 Corylus avellana HOM05D005859 ORTHO05D007576 1.0e-65 254.2 136 91.9
CANSAT64G2965 Cannabis sativa HOM05D005859 ORTHO05D007576 2.9e-65 252.7 136 91.2
Gorai.006G077600 Gossypium raimondii HOM05D005859 ORTHO05D007576 2.9e-65 252.7 136 91.2
Sed0013908 Sechium edule HOM05D005859 ORTHO05D007576 2.9e-65 252.7 136 91.9
CiPaw.07G208600 Carya illinoinensis HOM05D005859 ORTHO05D007576 3.8e-65 252.3 135 93.3
Duzib151G0554 Durio zibethinus HOM05D005859 ORTHO05D007576 5.0e-65 251.9 136 91.2
RcHm_v2.0_Chr6g0305541 Rosa chinensis HOM05D005859 ORTHO05D007576 6.5e-65 251.5 136 91.9
FvH4_2g36340 Fragaria vesca HOM05D005859 ORTHO05D007576 8.5e-65 251.1 136 92.6
FAN15G0047 Fragaria x ananassa HOM05D005859 ORTHO05D007576 8.5e-65 251.1 136 92.6
FAN20G1422 Fragaria x ananassa HOM05D005859 ORTHO05D007576 1.4e-64 250.4 136 91.9
Prupe.1G454800 Prunus persica HOM05D005859 ORTHO05D007576 1.9e-64 250.0 135 92.6
QL12p026076 Quercus lobata HOM05D005859 ORTHO05D007576 1.9e-64 250.0 133 94.0
Duzib151G0446 Durio zibethinus HOM05D005859 ORTHO05D007576 2.5e-64 249.6 136 91.2
MD08G1121000 Malus domestica HOM05D005859 ORTHO05D007576 2.5e-64 249.6 135 92.6
MELO3C011163.2 Cucumis melo HOM05D005859 ORTHO05D007576 3.2e-64 249.2 136 91.2
CSS0019957 Camellia sinensis var. sinensis HOM05D005859 ORTHO05D007576 4.2e-64 248.8 136 90.4
Oeu056039.1 Olea europaea HOM05D005859 ORTHO05D007576 4.2e-64 248.8 136 87.5
ClCG08G012440 Citrullus lanatus HOM05D005859 ORTHO05D007576 5.5e-64 248.4 136 91.2
Gohir.A09G063900 Gossypium hirsutum HOM05D005859 ORTHO05D007576 5.5e-64 248.4 136 89.0
Lj1g0020437 Lotus japonicus HOM05D005859 ORTHO05D007576 7.2e-64 248.1 136 89.0
Ca_15630_v3 Cicer arietinum L. HOM05D005859 ORTHO05D007576 9.4e-64 247.7 135 90.4
COL.COLO4_34684 Corchorus olitorius HOM05D005859 ORTHO05D007576 9.4e-64 247.7 135 89.6
Rhsim05G0088100 Rhododendron simsii HOM05D005859 ORTHO05D007576 9.4e-64 247.7 136 92.6
CsaV3_2G031130 Cucumis sativus L. HOM05D005859 ORTHO05D007576 1.6e-63 246.9 136 90.4
CSS0037116 Camellia sinensis var. sinensis HOM05D005859 ORTHO05D007576 2.1e-63 246.5 142 87.3
Thecc.04G293600 Theobroma cacao HOM05D005859 ORTHO05D007576 2.7e-63 246.1 136 91.9
Cpa.g.sc10.203 Carica papaya HOM05D005859 ORTHO05D007576 4.7e-63 245.4 136 87.5
Sed0022456 Sechium edule HOM05D005859 ORTHO05D007576 6.1e-63 245.0 135 88.9
VMungo1309G0784 Vigna mungo HOM05D005859 ORTHO05D007576 6.1e-63 245.0 157 80.3
CSS0002423 Camellia sinensis var. sinensis HOM05D005859 ORTHO05D007576 1.4e-62 243.8 142 86.6
Ciclev10009277m.g Citrus clementina HOM05D005859 ORTHO05D007576 1.4e-62 243.8 135 89.6
HanXRQChr14g0440281 Helianthus annuus HOM05D005859 ORTHO05D007576 1.4e-62 243.8 157 77.7
ECA238G0328 Erigeron canadensis HOM05D005859 ORTHO05D007576 1.8e-62 243.4 135 88.1
Sabra06G0214800 Salix brachista HOM05D005859 ORTHO05D007576 1.8e-62 243.4 135 87.4
TPR.G1368 Trifolium pratense HOM05D005859 ORTHO05D007576 1.8e-62 243.4 135 89.6
Atru.chr7.2673 Acer truncatum HOM05D005859 ORTHO05D007576 2.3e-62 243.0 135 88.9
Glyma.06G080300 Glycine max HOM05D005859 ORTHO05D007576 2.3e-62 243.0 136 89.0
Potri.006G277100 Populus trichocarpa HOM05D005859 ORTHO05D007576 2.3e-62 243.0 135 87.4
CSS0033509 Camellia sinensis var. sinensis HOM05D005859 ORTHO05D007576 3.0e-62 242.7 136 87.5
Sc10g0009100 Simmondsia chinensis HOM05D005859 ORTHO05D007576 3.0e-62 242.7 136 86.0
Glyma.04G078700 Glycine max HOM05D005859 ORTHO05D007576 3.9e-62 242.3 136 88.2
Phvul.009G104500 Phaseolus vulgaris HOM05D005859 ORTHO05D007576 3.9e-62 242.3 157 80.3
PGR042G0112 Punica granatum HOM05D005859 ORTHO05D007576 3.9e-62 242.3 135 85.2
TWI63G1176 Tripterygium wilfordii HOM05D005859 ORTHO05D007576 5.2e-62 241.9 135 88.1
MSTRG.12122 Avicennia marina HOM05D005859 ORTHO05D007576 6.7e-62 241.5 136 88.2
Psat5g022960 Pisum sativum HOM05D005859 ORTHO05D007576 6.7e-62 241.5 135 88.9
Manes.08G049200 Manihot esculenta HOM05D005859 ORTHO05D007576 8.8e-62 241.1 133 89.5
Aqoxy7G02813 Aquilegia oxysepala HOM05D005859 ORTHO05D007576 1.1e-61 240.7 126 94.4
Medtr3g109360 Medicago truncatula HOM05D005859 ORTHO05D007576 2.6e-61 239.6 135 87.4
Rhsim02G0125100 Rhododendron simsii HOM05D005859 ORTHO05D007576 2.6e-61 239.6 136 91.2
TAR625G0738 Trochodendron aralioides HOM05D005859 ORTHO05D007576 3.3e-61 239.2 125 94.4
AUR62007184 Chenopodium quinoa HOM05D005859 ORTHO05D007576 4.4e-61 238.8 136 83.1
Ah.07g199340 Amaranthus hybridus HOM05D005859 ORTHO05D007576 7.4e-61 238.0 136 84.6
SalBow1G3786 Salvia bowleyana HOM05D005859 ORTHO05D007576 7.4e-61 238.0 130 88.5
CSS0022235 Camellia sinensis var. sinensis HOM05D005859 ORTHO05D007576 2.2e-60 236.5 172 72.1
Lsat_1_v5_gn_5_41801 Lactuca sativa HOM05D005859 ORTHO05D007576 2.8e-60 236.1 134 84.3
Lalb_Chr11g0064301 Lupinus albus HOM05D005859 ORTHO05D007576 2.8e-60 236.1 136 86.0
Eucgr.A02021 Eucalyptus grandis HOM05D005859 ORTHO05D007576 3.7e-60 235.7 136 83.8
Nn2g12765 Nelumbo nucifera HOM05D005859 ORTHO05D007576 3.7e-60 235.7 125 91.2
Cc09_g05860 Coffea canephora HOM05D005859 ORTHO05D007576 4.8e-60 235.3 135 87.4
Migut.A01131 Erythranthe guttata HOM05D005859 ORTHO05D007576 4.8e-60 235.3 131 86.3
Potri.018G003900 Populus trichocarpa HOM05D005859 ORTHO05D007576 4.8e-60 235.3 135 85.2
SGA_v2.0_scaffold104G30176 Striga asiatica HOM05D005859 ORTHO05D007576 4.8e-60 235.3 134 85.1
DCAR_010833 Daucus carota HOM05D005859 ORTHO05D007576 8.2e-60 234.6 132 87.1
Sabra18G0009500 Salix brachista HOM05D005859 ORTHO05D007576 1.4e-59 233.8 125 90.4
EL10Ac5g12246 Beta vulgaris HOM05D005859 ORTHO05D007576 2.4e-59 233.0 136 83.1
CDE05G2856 Ceratophyllum demersum HOM05D005859 ORTHO05D007576 3.1e-59 232.6 123 91.1
Peaxi162Scf00149g00014 Petunia axillaris HOM05D005859 ORTHO05D007576 3.1e-59 232.6 155 75.5
THA.LOC104814931 Tarenaya hassleriana HOM05D005859 ORTHO05D007576 5.3e-59 231.9 135 82.2
Sabra18G0001700 Salix brachista HOM05D005859 ORTHO05D007576 7.0e-59 231.5 125 89.6
Aa31LG11G4050 Aethionema arabicum HOM05D005859 ORTHO05D007576 1.2e-58 230.7 131 87.8
PSO063G7086 Papaver somniferum HOM05D005859 ORTHO05D007576 1.2e-58 230.7 125 88.8
MBI07_g41262_MAGBIO Magnolia biondii HOM05D005859 ORTHO05D007576 2.6e-58 229.6 141 83.0
AL6G36490 Arabidopsis lyrata HOM05D005859 ORTHO05D007576 4.5e-58 228.8 127 89.0
Carub.0006s2269 Capsella rubella HOM05D005859 ORTHO05D007576 4.5e-58 228.8 127 89.0
Nitab4.5_0003379g0070 Nicotiana tabacum HOM05D005859 ORTHO05D007576 1.0e-57 227.6 135 81.5
Nitab4.5_0006282g0050 Nicotiana tabacum HOM05D005859 ORTHO05D007576 1.0e-57 227.6 135 81.5
AT5G24840 Arabidopsis thaliana HOM05D005859 ORTHO05D007576 1.3e-57 227.3 126 88.9
Thhalv10004821m.g Eutrema salsugineum HOM05D005859 ORTHO05D007576 1.3e-57 227.3 127 89.0
C07p42930 Brassica napus HOM05D005859 ORTHO05D008158 2.9e-57 226.1 136 81.6
BolC7t44822H Brassica oleracea HOM05D005859 ORTHO05D008158 2.9e-57 226.1 136 81.6
BcaB04g19801 Brassica carinata HOM05D005859 ORTHO05D007576 3.8e-57 225.7 136 82.4
CARHR188610 Cardamine hirsuta HOM05D005859 ORTHO05D007576 3.8e-57 225.7 127 89.0
Sp2g22610 Schrenkiella parvula HOM05D005859 ORTHO05D007576 3.8e-57 225.7 127 88.2
HPP92_010546 Vanilla planifolia HOM05D005859 ORTHO05D007576 3.8e-57 225.7 124 88.7
HPP92_010585 Vanilla planifolia HOM05D005859 ORTHO05D007576 3.8e-57 225.7 124 88.7
A06p35610 Brassica napus HOM05D005859 ORTHO05D007576 1.1e-56 224.2 136 82.4
CAN.G149.19 Capsicum annuum HOM05D005859 ORTHO05D007576 1.5e-56 223.8 135 81.5
Zm00001eb208790 Zea mays HOM05D005859 ORTHO05D007576 1.5e-56 223.8 131 81.7
HPP92_010527 Vanilla planifolia HOM05D005859 ORTHO05D007576 3.2e-56 222.6 124 87.9
PGSC0003DMG400010428 Solanum tuberosum HOM05D005859 ORTHO05D007576 1.2e-55 220.7 126 84.9
BcaC04g23549 Brassica carinata HOM05D005859 ORTHO05D007576 3.6e-55 219.2 128 84.4
Solyc02g068650.2 Solanum lycopersicum HOM05D005859 ORTHO05D007576 4.7e-55 218.8 125 84.8
unitig_21.g20313 Utricularia gibba HOM05D005859 ORTHO05D007576 6.1e-55 218.4 127 85.0
Sopen02g017820 Solanum pennellii HOM05D005859 ORTHO05D007576 5.2e-54 215.3 125 84.0
SEGI_16955 Sequoiadendron giganteum HOM05D005859 ORTHO05D007576 8.8e-54 214.5 128 79.7
GSVIVG01035552001 Vitis vinifera HOM05D005859 ORTHO05D007576 8.8e-54 214.5 110 93.6
ATR0697G154 Amborella trichopoda HOM05D005859 ORTHO05D007576 7.5e-53 211.5 152 69.7
SMO358G0125 Selaginella moellendorffii HOM05D005859 ORTHO05D007576 1.7e-52 210.3 133 73.7
Pp3c24_9600 Physcomitrium patens HOM05D005859 ORTHO05D007576 2.8e-52 209.5 137 72.3
CBR_g63067 Chara braunii HOM05D005859 ORTHO05D007576 1.1e-51 207.6 123 74.8
Mapoly0026s0057 Marchantia polymorpha HOM05D005859 ORTHO05D007576 5.3e-51 205.3 134 73.1
AagrBONN_evm.TU.Sc2ySwM_344.1368 Anthoceros agrestis HOM05D005859 ORTHO05D007576 1.2e-50 204.1 124 76.6
Lj2P347T15 Lonicera japonica HOM05D005859 ORTHO05D007576 4.2e-48 195.7 113 84.1
MD15G1100000 Malus domestica HOM05D005859 ORTHO05D007576 5.5e-48 195.3 134 76.1
CSS0005155 Camellia sinensis var. sinensis HOM05D005859 ORTHO05D007576 9.4e-48 194.5 137 75.9
Cre07.g314550 Chlamydomonas reinhardtii HOM05D005859 ORTHO05D007576 3.7e-44 182.6 123 67.5
HanXRQChr07g0193381 Helianthus annuus HOM05D005859 ORTHO05D007576 6.3e-44 181.8 98 89.8
HanXRQChr09g0275211 Helianthus annuus HOM05D005859 ORTHO05D007576 1.4e-43 180.6 98 87.8
MCO01G481 Micromonas commoda HOM05D005859 ORTHO05D007576 1.0e-41 174.5 151 55.6
PRCOL_00003713 Prasinoderma coloniale HOM05D005859 ORTHO05D007576 2.6e-37 159.8 147 53.1
AUR62018819 Chenopodium quinoa HOM05D005859 ORTHO05D007576 1.7e-36 157.1 158 54.4
Haze_26141 Corylus avellana HOM05D005859 ORTHO05D007576 1.3e-33 147.5 148 48.0
BraA06t26486Z Brassica rapa HOM05D000880 ORTHO05D008158 5.0e-33 145.6 83 86.7
C09p07080 Brassica napus HOM05D000880 ORTHO05D008158 3.3e-32 142.9 84 85.7
HPP92_010304 Vanilla planifolia HOM05D005859 ORTHO05D007576 4.3e-32 142.5 76 90.8
CSS0049229 Camellia sinensis var. sinensis HOM05D005859 ORTHO05D007576 9.8e-29 131.3 136 58.1
CSS0043283 Camellia sinensis var. sinensis HOM05D005859 ORTHO05D007576 2.0e-26 123.6 136 54.4
BolC9t53628H Brassica oleracea HOM05D005859 ORTHO05D007576 2.8e-23 113.2 59 86.4
HPP92_010638 Vanilla planifolia HOM05D005859 ORTHO05D007576 1.1e-22 111.3 59 89.8
CSS0016583 Camellia sinensis var. sinensis HOM05D005859 ORTHO05D007576 3.1e-22 109.8 67 79.1
BolC9t53624H Brassica oleracea HOM05D000880 ORTHO05D008158 7.8e-18 95.1 55 85.5
HPP92_010538 Vanilla planifolia HOM05D005859 ORTHO05D007576 8.9e-14 81.6 44 88.6
A09p06390 Brassica napus HOM05D000880 ORTHO05D008158 1.2e-13 81.3 53 79.2
CSS0020153 Camellia sinensis var. sinensis HOM05D005859 ORTHO05D007576 6.6e-09 65.5 37 83.8
TAR715G0002 Trochodendron aralioides HOM05D005695 ORTHO05D007810 5.6e-08 62.4 137 30.7
Glyma.07G122300 Glycine max HOM05D005695 ORTHO05D007810 7.3e-08 62.0 120 34.2
SEGI_31772 Sequoiadendron giganteum HOM05D005695 ORTHO05D007810 7.3e-08 62.0 120 34.2
Eucgr.D01073 Eucalyptus grandis HOM05D005695 ORTHO05D007810 1.6e-07 60.8 120 33.3
AagrBONN_evm.TU.Sc2ySwM_117.3790 Anthoceros agrestis HOM05D005695 ORTHO05D007810 2.1e-07 60.5 122 29.5
unitig_22.g5902 Utricularia gibba HOM05D005695 ORTHO05D007810 2.8e-07 60.1 124 32.3
PSO782G5257 Papaver somniferum HOM05D005695 ORTHO05D007810 3.6e-07 59.7 121 33.1
CAN.G992.23 Capsicum annuum HOM05D005695 ORTHO05D007810 1.1e-06 58.2 140 30.0
Solyc01g081460.3 Solanum lycopersicum HOM05D005695 ORTHO05D007810 1.1e-06 58.2 136 30.9
Sopen01g033020 Solanum pennellii HOM05D005695 ORTHO05D007810 1.1e-06 58.2 141 29.1
ATR0568G060 Amborella trichopoda HOM05D005695 ORTHO05D007810 1.4e-06 57.8 121 30.6
Duzib177G0357 Durio zibethinus HOM05D005695 ORTHO05D007810 1.4e-06 57.8 121 32.2
CiPaw.02G047100 Carya illinoinensis HOM05D005695 ORTHO05D007810 1.8e-06 57.4 129 34.1
Hma1.2p1_0128F.1_g060080 Hydrangea macrophylla HOM05D005695 ORTHO05D007810 1.8e-06 57.4 120 32.5
PSO063G4708 Papaver somniferum HOM05D005695 ORTHO05D007810 1.8e-06 57.4 121 32.2
HPP92_023786 Vanilla planifolia HOM05D005695 ORTHO05D007810 1.8e-06 57.4 131 35.1
CANSAT54G1451 Cannabis sativa HOM05D005695 ORTHO05D007810 2.4e-06 57.0 120 32.5
Mapoly0006s0284 Marchantia polymorpha HOM05D005695 ORTHO05D007810 2.4e-06 57.0 121 28.9
Zm00001eb004570 Zea mays HOM05D005695 ORTHO05D007810 2.4e-06 57.0 121 33.1
CDE11G0447 Ceratophyllum demersum HOM05D005695 ORTHO05D007810 3.1e-06 56.6 137 32.1
Cre04.g213500 Chlamydomonas reinhardtii HOM05D005695 ORTHO05D007810 3.1e-06 56.6 121 30.6
CsaV3_3G009910 Cucumis sativus L. HOM05D005695 ORTHO05D007810 3.1e-06 56.6 121 32.2
Lj3g0016519 Lotus japonicus HOM05D005695 ORTHO05D007810 3.1e-06 56.6 121 32.2
PGSC0003DMG400031121 Solanum tuberosum HOM05D005695 ORTHO05D007810 3.1e-06 56.6 136 30.9
CBR_g38752 Chara braunii HOM05D005695 ORTHO05D007810 4.0e-06 56.2 120 31.7
Cc05_g03930 Coffea canephora HOM05D005695 ORTHO05D007810 4.0e-06 56.2 121 33.1
PGR083G0136 Punica granatum HOM05D005695 ORTHO05D007810 4.0e-06 56.2 121 33.1
Ciclev10032172m.g Citrus clementina HOM05D005695 ORTHO05D007810 5.2e-06 55.8 121 31.4
DCAR_015741 Daucus carota HOM05D005695 ORTHO05D007810 5.2e-06 55.8 141 29.8
arahy.Tifrunner.gnm1.ann1.9M82AQ Arachis hypogaea HOM05D005695 ORTHO05D007810 6.8e-06 55.5 121 32.2
arahy.Tifrunner.gnm1.ann1.HX5TFH Arachis hypogaea HOM05D005695 ORTHO05D007810 6.8e-06 55.5 121 32.2
Medtr8g009680 Medicago truncatula HOM05D005695 ORTHO05D007810 6.8e-06 55.5 121 31.4
MCO05G350 Micromonas commoda HOM05D005695 ORTHO05D007810 6.8e-06 55.5 129 30.2
Os01g0535900 Oryza sativa ssp. japonica HOM05D005695 ORTHO05D007810 6.8e-06 55.5 121 33.9
GSVIVG01019305001 Vitis vinifera HOM05D005695 ORTHO05D007810 6.8e-06 55.5 121 31.4
Psat4g216440 Pisum sativum HOM05D005695 ORTHO05D007810 8.9e-06 55.1 121 30.6
TPR.G17373 Trifolium pratense HOM05D005695 ORTHO05D007810 8.9e-06 55.1 121 31.4


User provided reference genes

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