Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv07259 Davidia involucrata HOM05D002593 ORTHO05D006476 4.7e-263 910.6 449 100.0
CSS0033070 Camellia sinensis var. sinensis HOM05D002593 ORTHO05D006476 5.8e-152 541.6 357 77.9
CSS0004310 Camellia sinensis var. sinensis HOM05D002593 ORTHO05D006476 1.1e-150 537.3 357 77.0
Actinidia06597 Actinidia chinensis HOM05D002593 ORTHO05D006476 1.2e-149 533.9 358 76.8
Hma1.2p1_0619F.1_g190360 Hydrangea macrophylla HOM05D002593 ORTHO05D006476 6.0e-149 531.6 358 76.8
TAR381G0271 Trochodendron aralioides HOM05D002593 ORTHO05D006476 3.1e-145 519.2 362 74.3
TAR381G0660 Trochodendron aralioides HOM05D002593 ORTHO05D006476 3.1e-145 519.2 362 74.3
Lj1A109G43 Lonicera japonica HOM05D002593 ORTHO05D006476 1.5e-144 516.9 359 76.0
Rhsim10G0129800 Rhododendron simsii HOM05D002593 ORTHO05D006476 2.6e-144 516.2 355 74.4
GSVIVG01022377001 Vitis vinifera HOM05D002593 ORTHO05D006476 3.4e-144 515.8 360 74.4
Oeu042316.1 Olea europaea HOM05D002593 ORTHO05D006476 3.5e-141 505.8 357 73.9
Atru.chr4.1131 Acer truncatum HOM05D002593 ORTHO05D006476 1.1e-139 500.7 358 72.9
Potri.005G070700 Populus trichocarpa HOM05D002593 ORTHO05D006476 2.5e-139 499.6 357 73.7
Peaxi162Scf00076g01057 Petunia axillaris HOM05D002593 ORTHO05D006476 4.3e-139 498.8 358 72.9
Ciclev10000418m.g Citrus clementina HOM05D002593 ORTHO05D006476 1.4e-137 493.8 357 72.5
Cpa.g.sc37.46 Carica papaya HOM05D002593 ORTHO05D006476 3.1e-137 492.7 355 71.8
Sabra05G0057500 Salix brachista HOM05D002593 ORTHO05D006476 3.1e-137 492.7 357 72.3
DCAR_000693 Daucus carota HOM05D002593 ORTHO05D006476 1.2e-136 490.7 360 72.2
RcHm_v2.0_Chr5g0020561 Rosa chinensis HOM05D002593 ORTHO05D006476 1.5e-136 490.3 358 70.9
FAN16G0380 Fragaria x ananassa HOM05D002593 ORTHO05D006476 7.6e-136 488.0 358 70.1
FAN16G0459 Fragaria x ananassa HOM05D002593 ORTHO05D006476 7.6e-136 488.0 358 70.1
FvH4_3g12600 Fragaria vesca HOM05D002593 ORTHO05D006476 9.9e-136 487.6 358 70.4
CANSAT01G0469 Cannabis sativa HOM05D002593 ORTHO05D006476 2.2e-135 486.5 358 71.5
PGSC0003DMG401014557 Solanum tuberosum HOM05D002593 ORTHO05D006476 2.2e-135 486.5 358 72.1
MD05G1249400 Malus domestica HOM05D002593 ORTHO05D006476 3.8e-135 485.7 359 70.8
MELO3C008996.2 Cucumis melo HOM05D002593 ORTHO05D006476 4.9e-135 485.3 357 69.7
Cc11_g02090 Coffea canephora HOM05D002593 ORTHO05D006476 6.4e-135 485.0 358 70.7
CsaV3_4G031190 Cucumis sativus L. HOM05D002593 ORTHO05D006476 6.4e-135 485.0 358 70.4
Solyc05g009080.4 Solanum lycopersicum HOM05D002593 ORTHO05D006476 8.4e-135 484.6 358 71.8
SGA_v2.0_scaffold244G44338 Striga asiatica HOM05D002593 ORTHO05D006476 1.4e-134 483.8 357 70.3
Hma1.2p1_0619F.1_g190380 Hydrangea macrophylla HOM05D002593 ORTHO05D006476 2.4e-134 483.0 323 77.7
Migut.L00269 Erythranthe guttata HOM05D002593 ORTHO05D006476 3.2e-134 482.6 352 70.2
CAN.G610.52 Capsicum annuum HOM05D002593 ORTHO05D006476 9.3e-134 481.1 359 70.2
Eucgr.I00094 Eucalyptus grandis HOM05D002593 ORTHO05D006476 9.3e-134 481.1 359 71.9
MSTRG.3600 Avicennia marina HOM05D002593 ORTHO05D006476 1.2e-133 480.7 358 72.3
Sopen05g004810 Solanum pennellii HOM05D002593 ORTHO05D006476 1.2e-133 480.7 358 71.2
SalBow7G4483 Salvia bowleyana HOM05D002593 ORTHO05D006476 2.7e-133 479.6 356 70.2
Aqoxy6G00211 Aquilegia oxysepala HOM05D002593 ORTHO05D006476 6.0e-133 478.4 358 68.4
FAN25G3668 Fragaria x ananassa HOM05D002593 ORTHO05D006476 6.0e-133 478.4 358 69.3
TWI79G0542 Tripterygium wilfordii HOM05D002593 ORTHO05D006476 1.0e-132 477.6 352 68.8
ClCG04G001200 Citrullus lanatus HOM05D002593 ORTHO05D006476 5.1e-132 475.3 357 68.6
QL01p049838 Quercus lobata HOM05D002593 ORTHO05D006476 8.7e-132 474.6 404 64.9
PGR119G1937 Punica granatum HOM05D002593 ORTHO05D006476 1.5e-131 473.8 361 69.8
COL.COLO4_12118 Corchorus olitorius HOM05D002593 ORTHO05D003294 3.3e-131 472.6 352 71.0
Duzib187G0031 Durio zibethinus HOM05D002593 ORTHO05D006476 3.3e-131 472.6 363 70.5
Lalb_Chr23g0272731 Lupinus albus HOM05D002593 ORTHO05D006476 3.3e-131 472.6 359 69.9
Thecc.01G142600 Theobroma cacao HOM05D002593 ORTHO05D006476 1.3e-130 470.7 357 70.0
Psat7g043240 Pisum sativum HOM05D002593 ORTHO05D006476 3.7e-130 469.2 358 68.4
Gohir.D09G005200 Gossypium hirsutum HOM05D002593 ORTHO05D006476 6.2e-130 468.4 362 69.9
Gorai.006G006800 Gossypium raimondii HOM05D002593 ORTHO05D006476 8.1e-130 468.0 362 70.2
Gohir.A09G006100 Gossypium hirsutum HOM05D002593 ORTHO05D006476 1.4e-129 467.2 362 71.0
Glyma.08G003500 Glycine max HOM05D002593 ORTHO05D006476 5.3e-129 465.3 359 69.4
Glyma.05G195900 Glycine max HOM05D002593 ORTHO05D006476 6.9e-129 464.9 359 69.6
CARHR204290 Cardamine hirsuta HOM05D002593 ORTHO05D006476 1.2e-128 464.2 360 68.9
PSO170G1422 Papaver somniferum HOM05D002593 ORTHO05D006476 1.5e-128 463.8 361 67.9
PSO528G0279 Papaver somniferum HOM05D002593 ORTHO05D006476 2.0e-128 463.4 361 67.6
Sed0011819 Sechium edule HOM05D002593 ORTHO05D006476 2.0e-128 463.4 358 67.0
Lj4g0024429 Lotus japonicus HOM05D002593 ORTHO05D006476 2.6e-128 463.0 359 68.2
A10p28060 Brassica napus HOM05D002593 ORTHO05D006476 3.4e-128 462.6 359 68.0
BraA10t44855Z Brassica rapa HOM05D002593 ORTHO05D006476 5.8e-128 461.8 359 68.0
Sp6g34150 Schrenkiella parvula HOM05D002593 ORTHO05D006476 5.8e-128 461.8 359 68.0
Ca_17607_v3 Cicer arietinum L. HOM05D002593 ORTHO05D006476 1.3e-127 460.7 358 67.6
Medtr8g094800 Medicago truncatula HOM05D002593 ORTHO05D006476 1.3e-127 460.7 359 66.9
BcaB08g37230 Brassica carinata HOM05D002593 ORTHO05D006476 2.2e-127 459.9 359 67.1
C09p68260 Brassica napus HOM05D002593 ORTHO05D006476 2.2e-127 459.9 359 67.1
BolC9t59574H Brassica oleracea HOM05D002593 ORTHO05D006476 2.2e-127 459.9 359 67.1
AT5G08720 Arabidopsis thaliana HOM05D002593 ORTHO05D006476 3.8e-127 459.1 359 68.0
vmacro12772 Vaccinium macrocarpon HOM05D002593 ORTHO05D006476 3.8e-127 459.1 351 69.2
AL6G19470 Arabidopsis lyrata HOM05D002593 ORTHO05D006476 2.5e-126 456.4 357 67.2
CiPaw.07G075900 Carya illinoinensis HOM05D002593 ORTHO05D006476 2.5e-126 456.4 299 77.6
Carub.0006s0769 Capsella rubella HOM05D002593 ORTHO05D006476 3.2e-126 456.1 360 67.8
Lalb_Chr12g0202891 Lupinus albus HOM05D002593 ORTHO05D006476 4.2e-126 455.7 358 67.6
Phvul.002G276400 Phaseolus vulgaris HOM05D002593 ORTHO05D006476 4.2e-126 455.7 386 64.5
EL10Ac4g09659 Beta vulgaris HOM05D002593 ORTHO05D006476 5.5e-126 455.3 370 64.3
TWI31G0641 Tripterygium wilfordii HOM05D002593 ORTHO05D006476 5.5e-126 455.3 357 67.5
VMungo1309G1997 Vigna mungo HOM05D002593 ORTHO05D006476 9.3e-126 454.5 354 68.4
Phvul.009G151900 Phaseolus vulgaris HOM05D002593 ORTHO05D006476 1.0e-124 451.1 357 66.7
VMungo0251G1864 Vigna mungo HOM05D002593 ORTHO05D006476 1.3e-124 450.7 386 64.2
arahy.Tifrunner.gnm1.ann1.VT8BG2 Arachis hypogaea HOM05D002593 ORTHO05D006476 2.3e-124 449.9 361 67.9
arahy.Tifrunner.gnm1.ann1.2HG3UE Arachis hypogaea HOM05D002593 ORTHO05D006476 5.1e-124 448.7 361 67.9
Sc06g0005350 Simmondsia chinensis HOM05D002593 ORTHO05D006476 6.7e-124 448.4 355 66.5
Hund21782 Selenicereus undatus HOM05D002593 ORTHO05D006476 4.3e-123 445.7 371 63.6
Glyma.04G207200 Glycine max HOM05D002593 ORTHO05D006476 9.6e-123 444.5 357 66.4
TPR.G37380 Trifolium pratense HOM05D002593 ORTHO05D006476 1.6e-122 443.7 367 64.9
AUR62000559 Chenopodium quinoa HOM05D002593 ORTHO05D006476 2.8e-122 443.0 369 63.4
Lsat_1_v5_gn_1_80920 Lactuca sativa HOM05D002593 ORTHO05D006476 1.8e-121 440.3 401 61.3
ECA248G3631 Erigeron canadensis HOM05D002593 ORTHO05D006476 5.3e-121 438.7 362 64.4
Aa31LG3G17840 Aethionema arabicum HOM05D002593 ORTHO05D006476 6.9e-121 438.3 365 64.9
HanXRQChr03g0087641 Helianthus annuus HOM05D002593 ORTHO05D006476 9.0e-121 438.0 356 64.0
Ah.06g188520 Amaranthus hybridus HOM05D002593 ORTHO05D006476 2.9e-119 433.0 364 64.8
AUR62006910 Chenopodium quinoa HOM05D002593 ORTHO05D006476 3.8e-119 432.6 364 64.3
arahy.Tifrunner.gnm1.ann1.06HUX3 Arachis hypogaea HOM05D002593 ORTHO05D006476 3.0e-116 422.9 360 63.3
arahy.Tifrunner.gnm1.ann1.3HC2CW Arachis hypogaea HOM05D002593 ORTHO05D006476 3.0e-116 422.9 358 63.7
Os03g0837900 Oryza sativa ssp. japonica HOM05D002593 ORTHO05D006476 1.5e-115 420.6 354 61.6
unitig_899.g14455 Utricularia gibba HOM05D002593 ORTHO05D006476 4.3e-115 419.1 353 64.3
Manes.12G083900 Manihot esculenta HOM05D002593 ORTHO05D006476 1.6e-114 417.2 302 72.2
Thhalv10015845m.g Eutrema salsugineum HOM05D002593 ORTHO05D006476 2.3e-108 396.7 360 61.4
HPP92_025044 Vanilla planifolia HOM05D002593 ORTHO05D006476 2.5e-102 376.7 329 61.4
Haze_16323 Corylus avellana HOM05D002593 ORTHO05D006476 3.6e-101 372.9 312 66.7
Nitab4.5_0002512g0060 Nicotiana tabacum HOM05D002593 ORTHO05D006476 5.7e-99 365.5 443 51.2
Prupe.4G114800 Prunus persica HOM05D002593 ORTHO05D006476 1.3e-87 327.8 254 68.5
Actinidia20056 Actinidia chinensis HOM05D002593 ORTHO05D006476 5.0e-87 325.9 256 68.4
Cfa002121 Carpinus fangiana HOM05D002593 ORTHO05D006476 1.9e-86 323.9 253 69.2
Zm00001eb063890 Zea mays HOM05D002593 ORTHO05D006476 6.8e-84 315.5 273 60.4
Glyma.06G158400 Glycine max HOM05D002593 ORTHO05D006476 2.7e-80 303.5 252 63.5
ATR0584G276 Amborella trichopoda HOM05D002593 ORTHO05D006476 6.1e-77 292.4 255 62.0
Pp3c16_9330 Physcomitrium patens HOM05D002593 ORTHO05D006476 8.8e-76 288.5 360 46.1
PGSC0003DMG400012080 Solanum tuberosum HOM05D002593 ORTHO05D006476 1.7e-74 284.3 238 65.1
AagrBONN_evm.TU.Sc2ySwM_117.116 Anthoceros agrestis HOM05D002593 ORTHO05D006476 6.3e-74 282.3 355 45.9
Eucgr.I00052 Eucalyptus grandis HOM05D002593 ORTHO05D006476 4.1e-73 279.6 242 66.1
Mapoly0148s0001 Marchantia polymorpha HOM05D002593 ORTHO05D006476 9.5e-70 268.5 301 50.2
SMO230G0109 Selaginella moellendorffii HOM05D002593 ORTHO05D006476 1.5e-67 261.2 296 48.0
arahy.Tifrunner.gnm1.ann1.DM3640 Arachis hypogaea HOM05D002593 ORTHO05D006476 4.4e-67 259.6 271 53.9
CDE02G1715 Ceratophyllum demersum HOM05D002593 ORTHO05D006476 2.5e-62 243.8 162 73.5
SEGI_22974 Sequoiadendron giganteum HOM05D002593 ORTHO05D006476 4.7e-53 213.0 189 57.7
CBR_g48801 Chara braunii HOM05D002593 ORTHO05D006476 1.2e-51 208.4 343 37.9
CSS0002822 Camellia sinensis var. sinensis HOM05D002593 ORTHO05D006476 5.8e-43 179.5 92 93.5
CDE08G0854 Ceratophyllum demersum HOM05D002593 ORTHO05D006476 8.6e-39 165.6 144 61.1
CDE02G1036 Ceratophyllum demersum HOM05D002593 ORTHO05D006476 1.2e-37 161.8 182 51.6
Cfa002122 Carpinus fangiana HOM05D002593 ORTHO05D006476 3.6e-37 160.2 97 81.4
CSS0038308 Camellia sinensis var. sinensis HOM05D002593 ORTHO05D006476 1.5e-30 138.3 81 84.0
CSS0001259 Camellia sinensis var. sinensis HOM05D002593 ORTHO05D006476 4.3e-30 136.7 81 82.7
PGSC0003DMG402014557 Solanum tuberosum HOM05D002593 ORTHO05D006476 7.6e-27 125.9 97 67.0
FAN26G1490 Fragaria x ananassa HOM05D002593 ORTHO05D006476 2.2e-26 124.4 76 76.3
PRCOL_00005747 Prasinoderma coloniale HOM05D002593 ORTHO05D006476 3.1e-20 104.0 227 31.3
Cc11_g02630 Coffea canephora HOM05D002593 ORTHO05D006476 1.1e-17 95.5 45 95.6
arahy.Tifrunner.gnm1.ann1.898NT1 Arachis hypogaea HOM05D002593 ORTHO05D006476 1.4e-09 68.6 73 56.2
AagrBONN_evm.TU.Sc2ySwM_344.627 Anthoceros agrestis HOM05D015006 ORTHO05D015881 8.7e-07 59.3 172 27.9
SEGI_39457 Sequoiadendron giganteum HOM05D002593 ORTHO05D006476 2.5e-06 57.8 31 77.4


User provided reference genes

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