Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv06973 Davidia involucrata HOM05D005749 ORTHO05D007208 6.8e-34 146.7 73 100.0
Dinv35687 Davidia involucrata HOM05D005749 ORTHO05D007208 6.8e-10 67.0 36 91.7
Glyma.10G047600 Glycine max HOM05D005749 ORTHO05D007208 6.8e-10 67.0 36 91.7
Glyma.13G135400 Glycine max HOM05D005749 ORTHO05D007208 6.8e-10 67.0 36 91.7
Sc07g0006200 Simmondsia chinensis HOM05D005749 ORTHO05D007208 6.8e-10 67.0 36 91.7
EL10Ac7g17315 Beta vulgaris HOM05D005749 ORTHO05D007208 8.9e-10 66.6 40 82.5
CAN.G933.18 Capsicum annuum HOM05D005749 ORTHO05D007208 8.9e-10 66.6 36 88.9
Cpa.g.sc114.35 Carica papaya HOM05D005749 ORTHO05D007208 8.9e-10 66.6 36 88.9
Cc06_g03360 Coffea canephora HOM05D005749 ORTHO05D007208 8.9e-10 66.6 36 88.9
Eucgr.K03191 Eucalyptus grandis HOM05D005749 ORTHO05D007208 8.9e-10 66.6 36 88.9
Manes.08G001100 Manihot esculenta HOM05D005749 ORTHO05D007208 8.9e-10 66.6 36 88.9
Nitab4.5_0000754g0010 Nicotiana tabacum HOM05D005749 ORTHO05D007208 8.9e-10 66.6 36 88.9
Nitab4.5_0002073g0030 Nicotiana tabacum HOM05D005749 ORTHO05D007208 8.9e-10 66.6 36 88.9
Oeu029112.2 Olea europaea HOM05D000267 ORTHO05D000298 8.9e-10 66.6 36 88.9
Peaxi162Scf00146g01323 Petunia axillaris HOM05D005749 ORTHO05D007208 8.9e-10 66.6 36 88.9
PGR004G0882 Punica granatum HOM05D005749 ORTHO05D007208 8.9e-10 66.6 36 88.9
QL07p045817 Quercus lobata HOM05D005749 ORTHO05D007208 8.9e-10 66.6 36 88.9
RhsimUnG0120200 Rhododendron simsii HOM05D005749 ORTHO05D007208 8.9e-10 66.6 36 88.9
Solyc10g085980.2 Solanum lycopersicum HOM05D005749 ORTHO05D007208 8.9e-10 66.6 36 88.9
Sopen10g035350 Solanum pennellii HOM05D005749 ORTHO05D007208 8.9e-10 66.6 36 88.9
PGSC0003DMG400017609 Solanum tuberosum HOM05D005749 ORTHO05D007208 8.9e-10 66.6 36 88.9
unitig_27.g25368 Utricularia gibba HOM05D005749 ORTHO05D007208 8.9e-10 66.6 36 88.9
VMungo0720G0421 Vigna mungo HOM05D005749 ORTHO05D007208 8.9e-10 66.6 36 88.9
Sed0002515 Sechium edule HOM05D005749 ORTHO05D007208 1.2e-09 66.2 44 75.0
Gohir.D01G207000 Gossypium hirsutum HOM05D005749 ORTHO05D007208 1.5e-09 65.9 36 86.1
Gorai.002G252100 Gossypium raimondii HOM05D005749 ORTHO05D007208 1.5e-09 65.9 36 86.1
GSVIVG01025567001 Vitis vinifera HOM05D005749 ORTHO05D007208 1.5e-09 65.9 56 66.1
CSS0045869 Camellia sinensis var. sinensis HOM05D005749 ORTHO05D007208 2.0e-09 65.5 36 88.9
AUR62011608 Chenopodium quinoa HOM05D005749 ORTHO05D007208 2.0e-09 65.5 40 80.0
MBI13_g05975_MAGBIO Magnolia biondii HOM05D005749 ORTHO05D007208 2.0e-09 65.5 36 88.9
Actinidia11228 Actinidia chinensis HOM05D005749 ORTHO05D007208 2.6e-09 65.1 36 86.1
Actinidia19727 Actinidia chinensis HOM05D005749 ORTHO05D007208 2.6e-09 65.1 36 86.1
Aqoxy2G01923 Aquilegia oxysepala HOM05D005749 ORTHO05D007208 2.6e-09 65.1 36 86.1
Cfa017475 Carpinus fangiana HOM05D005749 ORTHO05D007208 2.6e-09 65.1 36 86.1
CiPaw.10G138600 Carya illinoinensis HOM05D005749 ORTHO05D007208 2.6e-09 65.1 36 86.1
AUR62016425 Chenopodium quinoa HOM05D005749 ORTHO05D007208 2.6e-09 65.1 36 86.1
Ca_02301_v3 Cicer arietinum L. HOM05D005749 ORTHO05D007208 2.6e-09 65.1 36 86.1
ClCG04G008720 Citrullus lanatus HOM05D005749 ORTHO05D007208 2.6e-09 65.1 36 86.1
Ciclev10011952m.g Citrus clementina HOM05D005749 ORTHO05D007208 2.6e-09 65.1 36 86.1
COL.COLO4_10301 Corchorus olitorius HOM05D005749 ORTHO05D007208 2.6e-09 65.1 36 86.1
ECA248G2107 Erigeron canadensis HOM05D005749 ORTHO05D007208 2.6e-09 65.1 36 86.1
HanXRQChr11g0349581 Helianthus annuus HOM05D005749 ORTHO05D007208 2.6e-09 65.1 36 86.1
Lsat_1_v5_gn_1_53521 Lactuca sativa HOM05D005749 ORTHO05D007208 2.6e-09 65.1 36 86.1
Lj5g0012474 Lotus japonicus HOM05D005749 ORTHO05D007208 2.6e-09 65.1 36 86.1
Medtr1g067200 Medicago truncatula HOM05D005749 ORTHO05D007208 2.6e-09 65.1 36 86.1
Potri.006G133900 Populus trichocarpa HOM05D005749 ORTHO05D007208 2.6e-09 65.1 36 86.1
RcHm_v2.0_Chr3g0468141 Rosa chinensis HOM05D005749 ORTHO05D007208 2.6e-09 65.1 36 83.3
SMO201G0179 Selaginella moellendorffii HOM05D005749 ORTHO05D007208 2.6e-09 65.1 36 86.1
Hund12066 Selenicereus undatus HOM05D005749 ORTHO05D007208 2.6e-09 65.1 36 86.1
SGA_v2.0_scaffold75G24898 Striga asiatica HOM05D005749 ORTHO05D007208 2.6e-09 65.1 36 86.1
Thecc.05G051000 Theobroma cacao HOM05D005749 ORTHO05D007208 2.6e-09 65.1 36 86.1
TPR.G35663 Trifolium pratense HOM05D005749 ORTHO05D007208 2.6e-09 65.1 36 86.1
vmacro20079 Vaccinium macrocarpon HOM05D005749 ORTHO05D007208 2.6e-09 65.1 36 86.1
Lj2A105T62 Lonicera japonica HOM05D005749 ORTHO05D007208 3.4e-09 64.7 35 91.4
Lalb_Chr02g0153481 Lupinus albus HOM05D005749 ORTHO05D007208 3.4e-09 64.7 36 88.9
Aa31LG3G15070 Aethionema arabicum HOM05D005749 ORTHO05D007208 4.4e-09 64.3 36 86.1
AL6G22910 Arabidopsis lyrata HOM05D005749 ORTHO05D007208 4.4e-09 64.3 36 86.1
AT5G12130 Arabidopsis thaliana HOM05D005749 ORTHO05D007208 4.4e-09 64.3 36 86.1
BcaNung06325 Brassica carinata HOM05D005749 ORTHO05D007208 4.4e-09 64.3 36 86.1
A10p25670 Brassica napus HOM05D005749 ORTHO05D007208 4.4e-09 64.3 36 86.1
C09p64740 Brassica napus HOM05D005749 ORTHO05D007208 4.4e-09 64.3 36 86.1
BolC9t59305H Brassica oleracea HOM05D005749 ORTHO05D007208 4.4e-09 64.3 36 86.1
BraA10t44632Z Brassica rapa HOM05D005749 ORTHO05D007208 4.4e-09 64.3 36 86.1
Carub.0006s1064 Capsella rubella HOM05D005749 ORTHO05D007208 4.4e-09 64.3 36 86.1
CARHR200990 Cardamine hirsuta HOM05D005749 ORTHO05D007208 4.4e-09 64.3 36 86.1
DCAR_014958 Daucus carota HOM05D005749 ORTHO05D007208 4.4e-09 64.3 36 83.3
Duzib093G1962 Durio zibethinus HOM05D005749 ORTHO05D007208 4.4e-09 64.3 36 80.6
Thhalv10013777m.g Eutrema salsugineum HOM05D005749 ORTHO05D007208 4.4e-09 64.3 36 86.1
Hma1.2p1_0350F.1_g132660 Hydrangea macrophylla HOM05D005749 ORTHO05D007208 4.4e-09 64.3 36 83.3
Lalb_Chr20g0112991 Lupinus albus HOM05D005749 ORTHO05D007208 4.4e-09 64.3 36 83.3
Mapoly0068s0066 Marchantia polymorpha HOM05D005749 ORTHO05D007208 4.4e-09 64.3 36 83.3
Psat6g125120 Pisum sativum HOM05D005749 ORTHO05D007208 4.4e-09 64.3 35 88.6
Sp6g31500 Schrenkiella parvula HOM05D005749 ORTHO05D007208 4.4e-09 64.3 36 86.1
SEGI_07760 Sequoiadendron giganteum HOM05D005749 ORTHO05D007208 4.4e-09 64.3 36 83.3
THA.LOC104816307 Tarenaya hassleriana HOM05D005749 ORTHO05D007208 4.4e-09 64.3 36 83.3
MD04G1111300 Malus domestica HOM05D005749 ORTHO05D007208 5.8e-09 63.9 36 83.3
Prupe.6G244800 Prunus persica HOM05D005749 ORTHO05D007208 5.8e-09 63.9 36 83.3
A02p01390 Brassica napus HOM05D005749 ORTHO05D007208 7.5e-09 63.5 36 83.3
C02p05630 Brassica napus HOM05D005749 ORTHO05D007208 7.5e-09 63.5 36 83.3
BolC2t06507H Brassica oleracea HOM05D005749 ORTHO05D007208 7.5e-09 63.5 36 83.3
BraA02t05118Z Brassica rapa HOM05D005749 ORTHO05D007208 7.5e-09 63.5 36 83.3
MELO3C003076.2 Cucumis melo HOM05D005749 ORTHO05D007208 7.5e-09 63.5 36 83.3
FvH4_6g14940 Fragaria vesca HOM05D005749 ORTHO05D007208 7.5e-09 63.5 36 80.6
FAN02G1517 Fragaria x ananassa HOM05D005749 ORTHO05D007208 7.5e-09 63.5 36 80.6
FAN09G3437 Fragaria x ananassa HOM05D005749 ORTHO05D007208 7.5e-09 63.5 36 80.6
FAN09G4246 Fragaria x ananassa HOM05D005749 ORTHO05D007208 7.5e-09 63.5 36 80.6
FAN14G3553 Fragaria x ananassa HOM05D005749 ORTHO05D007208 7.5e-09 63.5 36 80.6
Hma1.2p1_0350F.1_g132650 Hydrangea macrophylla HOM05D005749 ORTHO05D007208 7.5e-09 63.5 35 85.7
SalBow3G2006 Salvia bowleyana HOM05D005749 ORTHO05D007208 7.5e-09 63.5 36 83.3
TAR623G1622 Trochodendron aralioides HOM05D005749 ORTHO05D007208 7.5e-09 63.5 36 83.3
CANSAT80G2775 Cannabis sativa HOM05D005749 ORTHO05D007208 1.3e-08 62.8 36 80.6
CsaV3_4G024440 Cucumis sativus L. HOM05D005749 ORTHO05D007208 1.3e-08 62.8 36 83.3
Migut.J00398 Erythranthe guttata HOM05D005749 ORTHO05D007208 1.3e-08 62.8 36 83.3
Gohir.A01G218100 Gossypium hirsutum HOM05D005749 ORTHO05D007208 1.3e-08 62.8 36 80.6
FAN05G4959 Fragaria x ananassa HOM05D005749 ORTHO05D007208 1.7e-08 62.4 36 80.6
PSO339G5588 Papaver somniferum HOM05D005749 ORTHO05D007208 1.7e-08 62.4 36 83.3
PSO384G0170 Papaver somniferum HOM05D005749 ORTHO05D007208 1.7e-08 62.4 36 83.3
arahy.Tifrunner.gnm1.ann1.F15EJL Arachis hypogaea HOM05D005749 ORTHO05D007208 2.2e-08 62.0 33 90.9
arahy.Tifrunner.gnm1.ann1.R14JEG Arachis hypogaea HOM05D005749 ORTHO05D007208 2.2e-08 62.0 33 90.9
Haze_20679 Corylus avellana HOM05D005749 ORTHO05D007208 2.2e-08 62.0 36 83.3
Pp3c12_18750 Physcomitrium patens HOM05D005749 ORTHO05D007208 2.2e-08 62.0 36 80.6
AagrBONN_evm.TU.Sc2ySwM_362.1198 Anthoceros agrestis HOM05D005749 ORTHO05D007208 2.9e-08 61.6 36 77.8
MCO03G081 Micromonas commoda HOM05D005749 ORTHO05D007208 3.7e-08 61.2 49 55.1
MCO03G201 Micromonas commoda HOM05D005749 ORTHO05D007208 3.7e-08 61.2 49 55.1
ATR0594G051 Amborella trichopoda HOM05D005749 ORTHO05D007208 4.9e-08 60.8 36 77.8
Hma1.2p1_0111F.1_g053580 Hydrangea macrophylla HOM05D005749 ORTHO05D007208 6.4e-08 60.5 35 85.7
Lsat_1_v5_gn_1_79620 Lactuca sativa HOM05D005749 ORTHO05D007208 6.4e-08 60.5 34 85.3
MD12G1129500 Malus domestica HOM05D005749 ORTHO05D007208 6.4e-08 60.5 36 77.8
PRCOL_00003295 Prasinoderma coloniale HOM05D005749 ORTHO05D007208 6.4e-08 60.5 36 75.0
HPP92_000647 Vanilla planifolia HOM05D005749 ORTHO05D007208 1.1e-07 59.7 36 77.8
HPP92_000699 Vanilla planifolia HOM05D005749 ORTHO05D007208 1.1e-07 59.7 36 77.8
Ah.08g212020 Amaranthus hybridus HOM05D005749 ORTHO05D007208 2.4e-07 58.5 51 64.7
Zm00001eb355290 Zea mays HOM05D005749 ORTHO05D007208 4.1e-07 57.8 59 52.5
Cre17.g712400 Chlamydomonas reinhardtii HOM05D005749 ORTHO05D007208 5.4e-07 57.4 36 72.2
Dinv03750 Davidia involucrata HOM05D005749 ORTHO05D007208 5.4e-07 57.4 30 93.3
Os05g0121200 Oryza sativa ssp. japonica HOM05D005749 ORTHO05D007208 7.0e-07 57.0 36 72.2
arahy.Tifrunner.gnm1.ann1.SNR3S1 Arachis hypogaea HOM05D005749 ORTHO05D007208 9.2e-07 56.6 28 92.9
Zm00001eb265640 Zea mays HOM05D005749 ORTHO05D007208 9.2e-07 56.6 36 69.4
arahy.Tifrunner.gnm1.ann1.V0P37H Arachis hypogaea HOM05D005749 ORTHO05D007208 1.2e-06 56.2 28 89.3
Dinv07254 Davidia involucrata HOM05D005749 ORTHO05D007208 1.2e-06 56.2 27 100.0
PRCOL_00006447 Prasinoderma coloniale HOM05D005749 ORTHO05D007208 2.7e-06 55.1 36 66.7
CBR_g5606 Chara braunii HOM05D000019 ORTHO05D000002 3.5e-06 54.7 44 56.8


User provided reference genes

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